EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
21206492CD9P-1 expression correlates with the metastatic status of lung cancer, and a truncated form of CD9P-1, GS-168AT2, inhibits in vivo tumour growth.Br J Cancer2011 Feb 1Guilmain Wdoi: 10.1038/sj.bjc.6606033

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1116967214Nonsense_MutationnovelS648*0.25
BLCAchr1116961511Frame_Shift_InsnovelT495Nfs*460.19
BLCAchr1116961554Missense_MutationNAD509H0.06
BLCAchr1116967058Missense_MutationnovelL596R0.42
BLCAchr1116986877Silentrs748854692I850I0.39
BLCAchr11169870323'UTRnovel0.1
BLCAchr11169869913'UTRnovel0.3
BLCAchr1116949243Missense_MutationnovelL295Q0.25
BLCAchr1116961323Missense_MutationnovelV432L0.25
BRCAchr1116949387Missense_Mutationrs201175251S343L0.13
BRCAchr1116967015Missense_MutationNAR582C0.24
BRCAchr1116984682Missense_MutationNAD724H0.12
BRCAchr1116984929Nonsense_MutationnovelW806*0.09
BRCAchr1116961412Silentrs147606477S461S0.27
BRCAchr1116941952Missense_MutationNAR96Q0.18
BRCAchr1116984842Missense_MutationnovelL777W0.1
BRCAchr1116966945Missense_MutationnovelK558N0.34
CESCchr11169870233'UTRnovel0.23
CESCchr1116949293Missense_Mutationrs773910797E312K0.12
CESCchr1116967296SilentNAL675L0.42
CESCchr11169871043'UTRnovel0.21
CESCchr1116967029SilentNAL586L0.27
CESCchr1116944725Silentrs745433963P155P0.44
CESCchr1116986926Missense_Mutationrs140355100R867W0.33
CESCchr1116967296SilentNAL675L0.35
CESCchr11169901333'UTRnovel0.11
CESCchr1116984694Missense_MutationNAD728N0.24
CESCchr11169884193'UTRnovel0.1
CESCchr1116967106Missense_MutationNAS612F0.35
CESCchr1116967328Nonsense_MutationNAS686*0.38
CESCchr1116944958Missense_MutationnovelS233L0.55
CESCchr1116941791SilentnovelP42P0.14
CHOLchr11169886433'UTRnovel0.17
COADchr1116961371Missense_MutationnovelY448H0.37
COADchr1116944705Missense_MutationnovelP149S0.35
COADchr1116966932Missense_MutationNAA554V0.32
COADchr1116986809Missense_MutationNAA828T0.35
COADchr1116941818SilentNAP51P0.32
COADchr1116961408Missense_MutationNAT460I0.27
COADchr1116961330Missense_Mutationrs372487027T434M0.46
COADchr1116961444Missense_Mutationrs371176280T472M0.42
COADchr1116944926Silentrs768573793L222L0.37
COADchr1116966953Missense_MutationnovelF561Y0.1
COADchr1116974223Missense_MutationNAI689M0.17
COADchr1116941729Missense_MutationNAR22C0.38
COADchr1116949253SilentNAT298T0.28
COADchr1116984899Missense_MutationNAT796I0.45
COADchr1116944951Missense_MutationnovelR231C0.15
COADchr1116942027Frame_Shift_DelnovelS123Afs*350.15
COADchr1116949388SilentnovelS343S0.06
COADchr1116941989Silentrs757606870N108N0.13
COADchr1116944901Missense_MutationNAR214H0.28
COADchr1116941962SilentNAN99N0.29
COADchr1116941752Silentrs375720205A29A0.16
COADchr1116961524Missense_MutationNAN499H0.23
COADchr1116944981Missense_MutationNAD241N0.24
COADchr1116949490SilentnovelL377L0.27
DLBCchr1116949517Nonsense_MutationnovelW386*0.1
DLBCchr1116949287Missense_Mutationrs560392261R310W0.33
GBMchr1116967196Missense_MutationnovelM642K0.07
GBMchr1116967197Missense_MutationNAM642I0.06
GBMchr1116942021Missense_MutationNAC119F0.3
GBMchr1116961362Missense_MutationnovelV445I0.18
GBMchr1116984947Missense_MutationnovelI812T0.07
GBMchr1116949464Missense_MutationnovelG369S0.61
GBMchr1116966911Missense_MutationnovelD547G0.2
GBMchr1116967253Frame_Shift_DelnovelS661Ffs*210.11
GBMchr1116941953SilentnovelR96R0.36
HNSCchr1116967207Missense_Mutationrs140095202Q646E0.06
HNSCchr1116984810SilentnovelL766L0.38
HNSCchr1116961612Missense_MutationnovelW528L0.4
HNSCchr1116961274SilentnovelS415S0.27
HNSCchr1116945041Missense_MutationnovelE261K0.16
HNSCchr1116944845SilentnovelS195S0.27
HNSCchr1116961344Missense_MutationnovelA439S0.21
HNSCchr1116949388SilentnovelS343S0.1
HNSCchr1116941762Nonsense_Mutationrs537971311R33*0.13
HNSCchr1116941962SilentNAN99N0.15
KIRCchr1116949236Missense_MutationNAK293E0.56
KIRCchr1116974256SilentnovelS700S0.37
KIRPchr1116961575Missense_MutationnovelV516I0.39
LGGchr1116945040SilentNAQ260Q0.45
LGGchr1116961573Missense_Mutationrs753357980C515S0.34
LGGchr1116967187Missense_Mutationrs771569415R639H0.43
LGGchr1116967326SilentnovelT685T0.11
LGGchr11169870233'UTRnovel0.07
LUADchr1116984700Missense_MutationnovelS730P0.13
LUADchr1116967118Missense_MutationNAL616P0.17
LUADchr1116961415Missense_MutationNAE462D0.25
LUADchr1116961514SilentNAT495T0.21
LUADchr1116967226Missense_MutationnovelL652R0.51
LUADchr1116967182Missense_MutationnovelE637D0.4
LUADchr1116949357Missense_MutationNAR333L0.23
LUADchr1116949355Silentrs745764390A332A0.18
LUADchr1116949441Missense_MutationNAR361L0.24
LUSCchr1116984742Missense_MutationNAV744L0.33
LUSCchr1116967216Missense_MutationnovelD649Y0.53
LUSCchr1116949356Missense_Mutationrs141382228R333W0.2
LUSCchr1116967108Missense_MutationnovelV613L0.32
OVchr1116967056Missense_MutationnovelD595E0.06
OVchr1116974217Splice_RegionnovelG687G0.06
OVchr1116945074Missense_MutationnovelV272M0.29
OVchr1116941730Missense_MutationnovelR22L0.06
OVchr1116966991Missense_MutationnovelS574T0.26
PRADchr1116986926Missense_Mutationrs140355100R867W0.33
PRADchr1116974234Missense_MutationNAS693Y0.36
PRADchr1116941965Silentrs772638079D100D0.19
READchr1116966943Missense_MutationnovelK558Q0.44
READchr1116967193Missense_MutationNAR641Q0.18
SARCchr11169876693'UTRnovel0.07
SARCchr1116941843Missense_MutationnovelF60L0.37
SARCchr1116967182SilentnovelE637E0.47
SARCchr11169902623'UTRnovel0.16
SKCMchr1116944691Missense_MutationNAS144F0.3
SKCMchr1116941776SilentnovelT37T0.15
SKCMchr1116986891Missense_MutationNAS855F0.26
SKCMchr1116961412Silentrs147606477S461S0.28
SKCMchr1116944924Missense_MutationnovelL222F0.63
SKCMchr1116961366Missense_Mutationrs749956453S446L0.68
SKCMchr1116974267Missense_MutationnovelG704A0.32
SKCMchr1116961530Missense_MutationNAR501W0.28
SKCMchr1116966995Missense_MutationNAS575F0.19
SKCMchr1116945057Missense_Mutationrs137888350A266V0.23
SKCMchr1116961366Missense_Mutationrs749956453S446L0.23
SKCMchr1116961346Silentrs375627235A439A0.23
SKCMchr1116961645Missense_MutationnovelV539A0.38
SKCMchr1116949292Silentrs140719535P311P0.27
SKCMchr1116944781Missense_MutationNAA174V0.6
SKCMchr1116966915Silentrs779183691S548S0.3
SKCMchr1116967066Missense_MutationNAP599S0.33
SKCMchr1116961665Missense_MutationnovelE546K0.24
SKCMchr1116984901Missense_Mutationrs532216050P797S0.17
SKCMchr1116967270Missense_MutationNAL667F0.23
SKCMchr1116949291Missense_MutationNAP311L0.13
SKCMchr1116949365Missense_Mutationrs749073852R336C0.58
SKCMchr1116941744Missense_MutationNAP27S0.26
STADchr11169869683'UTRnovel0.31
STADchr1116949354Missense_Mutationrs781003149A332V0.13
STADchr1116941936Missense_Mutationrs769663692E91K0.28
STADchr1116944852Missense_Mutationrs761726439A198T0.29
STADchr1116942016SilentnovelY117Y0.46
STADchr1116942027Frame_Shift_DelnovelS123Afs*350.22
STADchr1116961656Nonsense_MutationnovelW543*0.08
STADchr1116945092Missense_MutationNAV278F0.07
STADchr1116949292Silentrs140719535P311P0.12
STADchr1116941835Missense_MutationnovelD57G0.4
STADchr1116949297Missense_MutationnovelV313A0.35
STADchr1116961294Missense_MutationnovelD422V0.05
STADchr1116967043Missense_MutationNAK591R0.26
STADchr1116967152Silentrs779715817G627G0.08
STADchr1116961473Missense_Mutationrs767876294R482W0.18
STADchr11169870133'UTRnovel0.21
STADchr1116949500Missense_Mutationrs150341125G381R0.1
STADchr1116949309Missense_MutationnovelF317Y0.45
STADchr1116974272SilentnovelL706L0.17
STADchr1116949523Missense_MutationNAK388N0.32
UCECchr1116967092SilentnovelS607S0.21
UCECchr11169876033'UTRnovel0.18
UCECchr11169899183'UTRnovel0.4
UCECchr1116967091Missense_MutationNAS607F0.37
UCECchr1116974263Missense_Mutationrs199657269R703W0.32
UCECchr11169871523'UTRnovel0.33
UCECchr11169870323'UTRnovel0.41
UCECchr11169896583'UTRnovel0.37
UCECchr1116966960Silentrs746791474A563A0.5
UCECchr1116945057Missense_Mutationrs137888350A266V0.39
UCECchr11169896003'UTRnovel0.17
UCECchr1116974263Missense_Mutationrs199657269R703W0.05
UCECchr1116961353Nonsense_Mutationrs763937461R442*0.35
UCECchr1116945027Missense_MutationnovelQ256L0.15
UCECchr1116949481Silentrs771592911H374H0.19
UCECchr1116949273Missense_MutationNAR305Q0.47
UCECchr1116961473Missense_Mutationrs767876294R482W0.51
UCECchr1116984974Missense_MutationNAV821A0.43
UCECchr1116986832Silentrs765377157I835I0.44
UCECchr1116967276Nonsense_MutationNAR669*0.66
UCECchr1116961389Missense_MutationNAR454C0.42
UCECchr11169885583'UTRrs351078390.38
UCECchr1116949328SilentnovelS323S0.25
UCECchr11169883853'UTRnovel0.19
UCECchr11169887203'UTRnovel0.14
UCECchr1116941754Missense_MutationnovelT30I0.27
UCECchr1116941969Missense_Mutationrs765722452V102M0.42
UCECchr1116949354Missense_Mutationrs781003149A332V0.36
UCECchr1116949461Missense_MutationnovelS368P0.28
UCECchr1116986925SilentnovelT866T0.22
UCECchr11169874803'UTRnovel0.41
UCECchr11169888153'UTRnovel0.46
UCECchr11169888173'UTRnovel0.46
UCECchr11169894683'UTRrs5437556690.14
UCECchr1116974219Missense_MutationnovelP688L0.29
UCECchr11169886223'UTRnovel0.07
UCECchr11169895723'UTRnovel0.65
UCECchr11169896643'UTRnovel0.44
UCECchr1116949214Missense_MutationnovelK285N0.18
UCECchr11169898283'UTRnovel0.56
UCECchr11169897783'UTRnovel0.34
UCECchr11169871973'UTRnovel0.38
UCECchr11169899013'UTRnovel0.16
UCECchr1116944931Missense_MutationnovelT224I0.42
UCECchr11169897113'UTRrs5702216800.4
UCECchr11169895943'UTRnovel0.37
UCECchr11169874963'UTRnovel0.38
UCECchr1116961308SilentnovelL427L0.62
UCECchr11169871303'UTRnovel0.45
UCECchr1116961524Missense_Mutationrs145469544N499D0.37
UCECchr1116944714Missense_MutationnovelR152W0.32
UCECchr11169875543'UTRnovel0.67
UCECchr11169877893'UTRnovel0.4
UCECchr1116986931Silentrs763120740R868R0.46
UCECchr1116961437Missense_MutationnovelD470Y0.07
UCECchr1116974263Missense_Mutationrs199657269R703W0.19
UCECchr11169870433'UTRnovel0.15
UCECchr11169872983'UTRnovel0.21
UCECchr11169903213'UTRnovel0.19
UCECchr1116941805Missense_MutationnovelD47G0.24
UCECchr1116941892Missense_MutationnovelV76A0.24
UCECchr1116984874Nonsense_MutationnovelF788*0.08
UCECchr1116984875Missense_MutationnovelF788C0.03
UCECchr1116941989Silentrs757606870N108N0.4
UCECchr1116942042Missense_MutationNAA126V0.2
UCECchr11169872383'UTRnovel0.55
UCECchr1116961511Frame_Shift_InsnovelT495Gfs*40.07
UCECchr1116984710Missense_Mutationrs775510089A733V0.21
UCECchr11169897103'UTRnovel0.46
UCECchr11169885583'UTRrs351078390.44
UCECchr11169900443'UTRnovel0.28
UCECchr1116949387Missense_Mutationrs201175251S343L0.07
UCECchr1116967306Missense_MutationNAI679V0.09
UCECchr11169900443'UTRnovel0.44
UCECchr1116944918Missense_MutationnovelV220M0.38
UCECchr1116967076Missense_Mutationrs745646518T602M0.54
UCECchr11169869753'UTRrs3730260590.36
UCECchr1116944840Missense_MutationnovelR194W0.29
UCSchr1116941729Missense_MutationNAR22C0.46
UCSchr1116949358SilentnovelR333R0.44

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CESCDEL0.09830.01281
COADDEL0.20840.00038973
DLBCDEL0.18750.0017831
HNSCDEL0.2057.836e-19
LUADDEL0.23062.5961e-13
LUSCDEL0.38321.8628e-17
READDEL0.26060.013822
SKCMDEL0.16899.7877e-07
STADDEL0.16550.0040659
TGCTAMP0.220.088103
UVMDEL0.23750.061261

Survival Analysis
CancerP-value Q-value
KIRC0.0057

Kaplan-Meier Survival Analysis

SARC0.034

Kaplan-Meier Survival Analysis

ACC0.0013

Kaplan-Meier Survival Analysis

SKCM0.0073

Kaplan-Meier Survival Analysis

ESCA0.021

Kaplan-Meier Survival Analysis

CESC0.011

Kaplan-Meier Survival Analysis

KICH0.0047

Kaplan-Meier Survival Analysis

LIHC0.00044

Kaplan-Meier Survival Analysis

LUAD0.0016

Kaplan-Meier Survival Analysis

UVM0.017

Kaplan-Meier Survival Analysis

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000134247 (Gene tree)
Gene ID
5738
Gene Symbol
PTGFRN
Alias
FPRP|EWI-F|CD9P-1|FLJ11001|KIAA1436|SMAP-6|CD315
Full Name
prostaglandin F2 receptor inhibitor
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
80,436 bases
Position
chr1:116,909,923-116,990,358
Accession
9601
RBP type
non-canonical RBP
Summary
(Prostaglandin F2 Receptor Inhibitor) is a Protein Coding gene. An important paralog of this gene is IGSF3.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000496699PTGFRN-202553--- (aa)--
ENST00000393203PTGFRN-2016178XM_017001874ENSP00000376899879 (aa)XP_016857363Q9P2B2
ENST00000497385PTGFRN-203457--- (aa)--
Gene Model
Click here to download ENSG00000134247's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000134247Albumins5.4690000E-005-
ENSG00000134247Erectile Dysfunction6E-720932654
ENSG00000134247Prostatic Neoplasms6E-720932654
ENSG00000134247Electromagnetic Radiation6E-720932654
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000134247rs777864651116969182CBlood protein levels29875488[0.45-0.61] unit decrease0.53EFO_0007937
ENSG00000134247rs42334501116947639TBlood protein levels29875488[0.94-1.06] unit increase1EFO_0007937
ENSG00000134247rs45469041116945089ABlood protein levels29875488[1.18-1.34] unit increase1.26EFO_0007937
ENSG00000134247rs28068641116927159?Erectile dysfunction and prostate cancer treatment20932654[NR]6.42GO_0009314|EFO_0001663|EFO_0004234
ENSG00000134247rs11276551116987885CType 2 diabetes30054458[0.028-0.059] unit increase0.0438EFO_0001360
ENSG00000134247rs42334501116947639TBlood protein levels30072576[0.42-0.54] unit increase0.478EFO_0007937
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000134247's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005515protein binding11278880.IPIFunction
GO:0005789endoplasmic reticulum membrane-IEAComponent
GO:0005794Golgi apparatus-IEAComponent
GO:0009986cell surface19581412.HDAComponent
GO:0014905myoblast fusion involved in skeletal muscle regeneration-ISSProcess
GO:0016021integral component of membrane21873635.IBAComponent
GO:0034389lipid droplet organization-IEAProcess
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