EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr2240021789Missense_MutationnovelA427T0.23
BLCAchr2240019269Silentrs141929176D197D0.16
BLCAchr2240019257SilentNAY193Y0.23
BLCAchr2240021820Missense_Mutationrs775584186R437H0.36
BLCAchr2240019991SilentNAV254V0.66
BLCAchr2240019310Missense_MutationnovelL211P0.24
BLCAchr2240021883Missense_MutationNAS458N0.16
BRCAchr2240021315Missense_MutationnovelD269Y0.14
BRCAchr2240029534Missense_MutationNAS491Y0.39
BRCAchr2240021457Missense_MutationNAS316F0.41
BRCAchr22400449523'Flanknovel0.4
BRCAchr2240019270Missense_MutationNAE198K0.38
CESCchr2240019269Silentrs141929176D197D0.49
CESCchr2240019175Missense_Mutationrs762810344A166D0.35
CESCchr2240021813Missense_Mutationrs567145342A435T0.33
CESCchr2240019269Silentrs141929176D197D0.28
CESCchr2239995465SilentnovelP141P0.24
CESCchr22400449133'Flanknovel0.33
CESCchr2240019270Nonsense_MutationnovelE198*0.37
COADchr2240021490Missense_MutationnovelY327F0.21
COADchr2240021639Missense_MutationnovelD377Y0.18
COADchr2240021667Missense_MutationnovelP386H0.15
COADchr2240021595Missense_MutationnovelA362V0.35
COADchr2240021337Missense_MutationnovelL276R0.1
ESCAchr2240021665Frame_Shift_InsnovelV388Rfs*790.3
ESCAchr2240021721Frame_Shift_InsnovelH406Afs*80.38
ESCAchr2239995297SilentnovelG85G0.5
GBMchr2240021575Silentrs573958791P355P0.28
GBMchr2240019205Frame_Shift_DelnovelD176Vfs*260.07
GBMchr2240021566Silentrs763939183G352G0.5
HNSCchr2240021465Frame_Shift_DelnovelR320Gfs*330.24
HNSCchr2240021671Silentrs776961253P387P0.24
KIRCchr2240021852Frame_Shift_DelnovelK448Rfs*230.19
LGGchr2240021582Nonsense_MutationnovelQ358*0.22
LUADchr2240021375Missense_Mutationrs761040921R289W0.07
LUADchr2240021506SilentnovelG332G0.26
LUADchr2240021507Missense_MutationnovelC333S0.25
LUADchr22400295793'UTRnovel0.5
LUADchr2240021315Missense_MutationnovelD269Y0.92
LUADchr2240019198Missense_MutationnovelD174N0.19
LUADchr2240021815Frame_Shift_InsnovelR436Efs*310.2
LUADchr2240019321Missense_MutationnovelD215Y0.86
LUADchr2240021812SilentNAP434P0.38
LUADchr2240019239Missense_MutationnovelK187N0.09
LUADchr2240019914Missense_MutationnovelV229F0.29
LUSCchr22400296483'UTRnovel1
LUSCchr2240021923Frame_Shift_DelnovelK473Rfs*260.14
LUSCchr2240019195Missense_MutationnovelT173A0.19
LUSCchr2240019243SilentNAR189R0.36
LUSCchr2240021593SilentNAG361G0.42
LUSCchr2240021707Missense_MutationNAK399N0.43
PRADchr2240021436Missense_MutationnovelR309M0.06
PRADchr2240021334Missense_MutationnovelL275P0.08
SARCchr2239995369SilentnovelP109P0.4
SARCchr2240021547Missense_Mutationrs201378321R346Q0.33
SARCchr2240021722SilentnovelV404V0.25
SARCchr2240021800SilentnovelG430G0.51
SKCMchr2240021839SilentNAF443F0.39
SKCMchr2240019244Missense_Mutationrs373369149R189Q0.27
SKCMchr2240019931Silentrs142043340P234P0.45
SKCMchr2240021680SilentnovelP390P0.98
SKCMchr2240021684Missense_MutationNAP392S0.21
SKCMchr2240019999Missense_MutationNAG257E0.27
SKCMchr2240019290Missense_MutationNAF204L0.64
SKCMchr2240021369Missense_MutationNAE287K0.92
SKCMchr2240021612Missense_Mutationrs746620839A368T0.9
SKCMchr2240021394Missense_MutationnovelS295F0.28
SKCMchr2240021502Missense_MutationNAS331L0.42
SKCMchr2240021809SilentnovelA433A0.37
SKCMchr2240021530Missense_MutationNAM340I0.31
SKCMchr2240019277Missense_MutationnovelG200E0.36
SKCMchr2240021502Missense_MutationNAS331L0.06
SKCMchr2240021685Missense_MutationnovelP392R0.24
SKCMchr2240021686SilentnovelP392P0.24
SKCMchr2240021330SilentNAL274L0.36
SKCMchr2240021324Missense_MutationNAL272F0.35
SKCMchr2240021707Silentrs780982282K399K0.23
SKCMchr2240021755SilentNAS415S0.35
SKCMchr2240019267Missense_MutationNAD197N0.2
SKCMchr2240019899Missense_Mutationrs141068393R224C0.14
SKCMchr2240019266SilentnovelL196L0.3
SKCMchr2240021783Missense_MutationNAG425R0.21
SKCMchr2240029515Splice_SiteNAX485_splice0.23
SKCMchr2240021432Missense_MutationnovelG308S0.31
SKCMchr2240021433Missense_MutationnovelG308D0.31
SKCMchr2240021800SilentnovelG430G0.45
SKCMchr2240029561Missense_MutationnovelS500F0.75
STADchr2240021546Missense_Mutationrs145428025R346W0.15
STADchr2240021541Missense_MutationNAA344V0.3
STADchr2240021665Frame_Shift_InsnovelV388Rfs*790.16
STADchr2240021796Frame_Shift_DelNAE431Rfs*400.26
STADchr2240021813Missense_Mutationrs567145342A435T0.31
STADchr2240021879Missense_Mutationrs778728277A457T0.22
STADchr2240021468Nonsense_MutationnovelR320*0.36
STADchr2240021650Silentrs551543842T380T0.21
STADchr2240019240Missense_Mutationrs754481227R188C0.25
STADchr2240021950SilentNAS480S0.18
STADchr2240021796Frame_Shift_DelNAE431Rfs*400.35
STADchr2240021835Missense_MutationNAL442H0.24
STADchr2240021463Missense_MutationnovelV318A0.06
STADchr2240019893Missense_Mutationrs531840891R222C0.16
THCAchr2240021405Missense_MutationNAD299N0.09
THYMchr22400297963'UTRnovel0.15
UCECchr2240021594Missense_Mutationrs758495757A362T0.51
UCECchr22400297533'UTRnovel0.32
UCECchr2240021772Missense_Mutationrs141861984R421Q0.27
UCECchr2240019175Missense_MutationnovelA166V0.32
UCECchr2240021388Missense_MutationNAA293V0.24
UCECchr2240021922Missense_Mutationrs781508185T471M0.43
UCECchr2240019328Missense_MutationNAR217Q0.4
UCECchr2240021772Missense_Mutationrs141861984R421Q0.29
UCECchr22400298943'UTRnovel0.39
UCECchr22400297933'UTRnovel0.36
UCECchr22400298573'UTRnovel0.42
UCECchr2240019917Missense_Mutationrs758127931G230S0.26
UCECchr2240021368Silentrs115837035T286T0.41
UCECchr2240019900Missense_Mutationrs536050162R224H0.31
UCECchr2240021468Nonsense_MutationnovelR320*0.69
UCECchr2240021339Missense_MutationnovelT277A0.29
UCECchr2240021593SilentNAG361G0.09
UCECchr22400297973'UTRrs5295085880.47
UCECchr22400449423'Flanknovel0.56
UCECchr2239995435SilentnovelG131G0.27
UCECchr2240019209SilentnovelI177I0.23
UCECchr2240021333Missense_MutationnovelL275F0.31

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
PCPGDEL0.33330.044123
THCADEL0.15630.046486
THYMDEL0.07320.063154

Survival Analysis
CancerP-value Q-value
KIRC0.0054

Kaplan-Meier Survival Analysis

SKCM0.012

Kaplan-Meier Survival Analysis

KIRP0.001

Kaplan-Meier Survival Analysis

COAD0.04

Kaplan-Meier Survival Analysis

PAAD0.0013

Kaplan-Meier Survival Analysis

BLCA0.049

Kaplan-Meier Survival Analysis

READ0.003

Kaplan-Meier Survival Analysis

LAML0.00043

Kaplan-Meier Survival Analysis

KICH0.049

Kaplan-Meier Survival Analysis

GBM0.00037

Kaplan-Meier Survival Analysis

LUAD0.011

Kaplan-Meier Survival Analysis

UVM0.04

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
Description
Ensembl ID
ENSG00000133477 (Gene tree)
Gene ID
113828
Gene Symbol
FAM83F
Alias
-
Full Name
family with sequence similarity 83 member F
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
48,581 bases
Position
chr22:39,994,949-40,043,529
Accession
25148
RBP type
canonical RBP
Summary
FAM83F (Family With Sequence Similarity 83 Member F) is a Protein Coding gene. An important paralog of this gene is FAM83G.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000330432FAM83PF07894.123.7e-10811
ENSP00000476600FAM83PF07894.121.2e-5411
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000473717FAM83F-2021917-ENSP00000476600332 (aa)-Q8NEG4
ENST00000488874FAM83F-203561--- (aa)--
ENST00000333407FAM83F-20115561-ENSP00000330432500 (aa)-Q8NEG4
Gene Model
Click here to download ENSG00000133477's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000133477Prostatic Neoplasms4E-723065704
ENSG00000133477Prostatic Neoplasms4E-623065704
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000133477rs117044162240040969CProstate cancer23065704[0.96-1.15]1.05EFO_0001663
ENSG00000133477rs117044162240040969CProstate cancer23065704[1.02-1.10]1.06EFO_0001663
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000133477's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000133477FAM83F10078.466ENSAMEG00000011020FAM83F9982.670Ailuropoda_melanoleuca
ENSG00000133477FAM83F9857.485ENSAPLG00000009665FAM83F9857.285Anas_platyrhynchos
ENSG00000133477FAM83F10055.094ENSACAG00000007387FAM83F10054.631Anolis_carolinensis
ENSG00000133477FAM83F10084.615ENSANAG00000027381FAM83F10087.377Aotus_nancymaae
ENSG00000133477FAM83F10080.157ENSBTAG00000014247FAM83F10082.122Bos_taurus
ENSG00000133477FAM83F10086.588ENSCJAG00000002721FAM83F10086.785Callithrix_jacchus
ENSG00000133477FAM83F10081.416ENSCAFG00000001288FAM83F10081.766Canis_familiaris
ENSG00000133477FAM83F9980.671ENSCAFG00020002339FAM83F9881.460Canis_lupus_dingo
ENSG00000133477FAM83F10081.065ENSCHIG00000026060FAM83F10081.854Capra_hircus
ENSG00000133477FAM83F9985.772ENSTSYG00000028609FAM83F10085.772Carlito_syrichta
ENSG00000133477FAM83F10075.811ENSCAPG00000004680FAM83F10078.250Cavia_aperea
ENSG00000133477FAM83F10078.698ENSCPOG00000014133FAM83F10078.698Cavia_porcellus
ENSG00000133477FAM83F10086.982ENSCCAG00000026740FAM83F10088.166Cebus_capucinus
ENSG00000133477FAM83F10096.208ENSCATG00000035519FAM83F10096.208Cercocebus_atys
ENSG00000133477FAM83F10080.512ENSCLAG00000016721FAM83F10080.512Chinchilla_lanigera
ENSG00000133477FAM83F10096.407ENSCSAG00000006058FAM83F10096.407Chlorocebus_sabaeus
ENSG00000133477FAM83F9582.353ENSCHOG00000010532FAM83F9983.575Choloepus_hoffmanni
ENSG00000133477FAM83F10055.664ENSCPBG00000022941FAM83F10056.055Chrysemys_picta_bellii
ENSG00000133477FAM83F10095.195ENSCANG00000030851FAM83F10095.585Colobus_angolensis_palliatus
ENSG00000133477FAM83F10080.318ENSCGRG00001018899Fam83f10079.722Cricetulus_griseus_chok1gshd
ENSG00000133477FAM83F10077.313ENSCGRG00000016702Fam83f10079.365Cricetulus_griseus_crigri
ENSG00000133477FAM83F10080.792ENSDNOG00000046641FAM83F10082.178Dasypus_novemcinctus
ENSG00000133477FAM83F9777.439ENSDORG00000013192Fam83f9779.341Dipodomys_ordii
ENSG00000133477FAM83F10069.231ENSETEG00000016860FAM83F10072.088Echinops_telfairi
ENSG00000133477FAM83F9885.944ENSEASG00005005338FAM83F9786.207Equus_asinus_asinus
ENSG00000133477FAM83F10084.676ENSECAG00000009129FAM83F10086.051Equus_caballus
ENSG00000133477FAM83F8570.526ENSEEUG00000001255-10070.526Erinaceus_europaeus
ENSG00000133477FAM83F10080.236ENSFCAG00000013509FAM83F10081.323Felis_catus
ENSG00000133477FAM83F10056.000ENSFALG00000012211FAM83F10056.274Ficedula_albicollis
ENSG00000133477FAM83F10077.581ENSFDAG00000006165FAM83F10078.779Fukomys_damarensis
ENSG00000133477FAM83F10054.943ENSGALG00000045936FAM83F8154.459Gallus_gallus
ENSG00000133477FAM83F9955.814ENSGAGG00000007869FAM83F10057.344Gopherus_agassizii
ENSG00000133477FAM83F10099.002ENSGGOG00000006871FAM83F10099.002Gorilla_gorilla
ENSG00000133477FAM83F10081.262ENSHGLG00000017812FAM83F10081.854Heterocephalus_glaber_female
ENSG00000133477FAM83F10079.056ENSHGLG00100004088FAM83F9981.328Heterocephalus_glaber_male
ENSG00000133477FAM83F9573.846ENSSTOG00000023057FAM83F8577.665Ictidomys_tridecemlineatus
ENSG00000133477FAM83F10081.765ENSJJAG00000011999Fam83f10081.373Jaculus_jaculus
ENSG00000133477FAM83F6147.937ENSLACG00000011004FAM83F10047.678Latimeria_chalumnae
ENSG00000133477FAM83F8680.974ENSLAFG00000016675FAM83F9982.093Loxodonta_africana
ENSG00000133477FAM83F10096.208ENSMFAG00000002020FAM83F10096.208Macaca_fascicularis
ENSG00000133477FAM83F10096.407ENSMMUG00000017166FAM83F10096.407Macaca_mulatta
ENSG00000133477FAM83F10096.008ENSMNEG00000033076FAM83F10096.008Macaca_nemestrina
ENSG00000133477FAM83F10095.495ENSMLEG00000034781FAM83F10096.296Mandrillus_leucophaeus
ENSG00000133477FAM83F9955.859ENSMGAG00000012348FAM83F9955.556Meleagris_gallopavo
ENSG00000133477FAM83F10079.447ENSMAUG00000015744Fam83f10078.656Mesocricetus_auratus
ENSG00000133477FAM83F10084.024ENSMICG00000016129FAM83F10084.024Microcebus_murinus
ENSG00000133477FAM83F10077.137ENSMOCG00000003997Fam83f10077.183Microtus_ochrogaster
ENSG00000133477FAM83F10062.931ENSMODG00000008966-9962.396Monodelphis_domestica
ENSG00000133477FAM83F10079.167MGP_CAROLIEiJ_G0020042Fam83f10078.770Mus_caroli
ENSG00000133477FAM83F10079.563ENSMUSG00000022408Fam83f10079.167Mus_musculus
ENSG00000133477FAM83F10079.365MGP_PahariEiJ_G0020044Fam83f10078.770Mus_pahari
ENSG00000133477FAM83F10079.563MGP_SPRETEiJ_G0020940Fam83f10079.167Mus_spretus
ENSG00000133477FAM83F9880.242ENSMLUG00000015534FAM83F9980.242Myotis_lucifugus
ENSG00000133477FAM83F10082.937ENSNGAG00000020952Fam83f10082.937Nannospalax_galili
ENSG00000133477FAM83F10097.006ENSNLEG00000015307FAM83F10097.006Nomascus_leucogenys
ENSG00000133477FAM83F9267.419ENSMEUG00000004881-9767.937Notamacropus_eugenii
ENSG00000133477FAM83F5574.825ENSOPRG00000000702-5579.720Ochotona_princeps
ENSG00000133477FAM83F10079.051ENSODEG00000012376FAM83F10079.051Octodon_degus
ENSG00000133477FAM83F9974.631ENSOCUG00000014060FAM83F9975.556Oryctolagus_cuniculus
ENSG00000133477FAM83F10085.119ENSOGAG00000030522FAM83F10085.119Otolemur_garnettii
ENSG00000133477FAM83F10075.595ENSOARG00000017179FAM83F9378.765Ovis_aries
ENSG00000133477FAM83F10098.498ENSPPAG00000027631FAM83F10098.871Pan_paniscus
ENSG00000133477FAM83F10081.409ENSPPRG00000021618FAM83F10082.387Panthera_pardus
ENSG00000133477FAM83F10072.566ENSPTIG00000021999FAM83F7975.490Panthera_tigris_altaica
ENSG00000133477FAM83F10099.401ENSPTRG00000014405FAM83F10099.401Pan_troglodytes
ENSG00000133477FAM83F10095.609ENSPANG00000016392FAM83F10095.609Papio_anubis
ENSG00000133477FAM83F8146.939ENSPSIG00000010230FAM83F10047.619Pelodiscus_sinensis
ENSG00000133477FAM83F10077.579ENSPEMG00000010602Fam83f10077.976Peromyscus_maniculatus_bairdii
ENSG00000133477FAM83F10067.761ENSPCIG00000020369FAM83F10066.988Phascolarctos_cinereus
ENSG00000133477FAM83F10096.407ENSPPYG00000011847FAM83F10096.407Pongo_abelii
ENSG00000133477FAM83F8287.162ENSPCAG00000008047FAM83F8287.162Procavia_capensis
ENSG00000133477FAM83F10086.982ENSPCOG00000016351FAM83F10086.785Propithecus_coquereli
ENSG00000133477FAM83F10081.139ENSPVAG00000004972FAM83F10082.515Pteropus_vampyrus
ENSG00000133477FAM83F10079.365ENSRNOG00000018330Fam83f10079.167Rattus_norvegicus
ENSG00000133477FAM83F10096.008ENSRBIG00000028821FAM83F10096.008Rhinopithecus_bieti
ENSG00000133477FAM83F10096.008ENSRROG00000031286FAM83F10096.008Rhinopithecus_roxellana
ENSG00000133477FAM83F10083.036ENSSBOG00000024462FAM83F10086.441Saimiri_boliviensis_boliviensis
ENSG00000133477FAM83F9962.388ENSSHAG00000011148-10063.265Sarcophilus_harrisii
ENSG00000133477FAM83F10057.946ENSSPUG00000010758FAM83F10058.221Sphenodon_punctatus
ENSG00000133477FAM83F9979.297ENSSSCG00000000079FAM83F9980.078Sus_scrofa
ENSG00000133477FAM83F9359.831ENSTGUG00000010169FAM83F10059.916Taeniopygia_guttata
ENSG00000133477FAM83F10080.276ENSTBEG00000005578FAM83F10080.276Tupaia_belangeri
ENSG00000133477FAM83F9967.066ENSTTRG00000011451-9968.142Tursiops_truncatus
ENSG00000133477FAM83F10079.371ENSUAMG00000007221FAM83F10081.139Ursus_americanus
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