EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact
TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
25652936CAP1 is overexpressed in human epithelial ovarian cancer and promotes cell proliferation.Int J Mol Med2015 AprHua Mdoi: 10.3892/ijmm.2015.2089
25371324Overexpression of adenylate cyclase-associated protein 1 may predict brain metastasis in non-small cell lung cancer.Oncol Rep2015 JanXie SSdoi: 10.3892/or.2014.3577
23842884Overexpression of adenylate cyclase-associated protein 1 is associated with metastasis of lung cancer.Oncol Rep2013 OctTan Mdoi: 10.3892/or.2013.2607
19188911Adenylate cyclase-associated protein 1 overexpressed in pancreatic cancers is involved in cancer cell motility.Lab Invest2009 AprYamazaki Kdoi: 10.1038/labinvest.2009.5
27173014CAP1 (Cyclase-Associated Protein 1) Exerts Distinct Functions in the Proliferation and Metastatic Potential of Breast Cancer Cells Mediated by ERK.Sci Rep2016 May 13Zhang Hdoi: 10.1038/srep25933.
29641286Association of RETN and CAP1 SNPs, Expression and Serum Resistin Levels with Breast Cancer in Mexican Women.Genet Test Mol Biomarkers2018 AprMuoz-Palomeque Adoi: 10.1089/gtmb.2017.0212

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr140066248Nonsense_MutationnovelY186*0.16
BLCAchr140070936Missense_MutationNAS434F0.05
BLCAchr140064295Missense_MutationnovelK121N0.55
BLCAchr140060082Missense_MutationNAY43C0.42
BLCAchr140071476Missense_MutationNAF457L0.58
BLCAchr140064258Nonsense_MutationNAS109*0.22
BLCAchr140070946Missense_MutationnovelM437I0.2
BLCAchr140059413Missense_MutationnovelH23Y0.22
BRCAchr140064533Missense_MutationNAN166K0.2
BRCAchr1400723413'Flanknovel0.26
BRCAchr140059431Missense_MutationNAR29G0.44
BRCAchr140070922Frame_Shift_DelNAS431Pfs*60.16
CESCchr1400723613'Flanknovel0.45
CESCchr140061768Nonsense_MutationnovelR84*0.37
CESCchr140071473Frame_Shift_InsnovelK458Qfs*?0.24
CESCchr1400405865'Flanknovel0.5
CESCchr140070510Missense_MutationNAQ400E0.31
COADchr140064299SilentNAR123R0.16
COADchr1400715943'Flankrs1851602260.16
COADchr140071492Missense_MutationNAG463R0.3
COADchr140071463Missense_MutationNAV453A0.18
COADchr140067555Nonsense_MutationNAE216*0.31
COADchr140070941Missense_Mutationrs374359120E436K0.18
COADchr140064296In_Frame_InsnovelN122delinsIQEKIH0.06
HNSCchr140069762Missense_Mutationrs35749351R294H0.22
HNSCchr140070464Silentrs749068331D384D0.23
HNSCchr140071498Missense_MutationnovelK465Q0.26
HNSCchr140060100Missense_Mutationrs765357509S49L0.31
HNSCchr140070431Frame_Shift_DelnovelN374Gfs*40.23
HNSCchr140059376Missense_MutationnovelR10S0.24
KICHchr140071492Missense_MutationNAG463R0.12
KIRPchr140070873Missense_MutationNAT413I0.38
LGGchr140064517Frame_Shift_InsnovelM162Vfs*170.06
LUSCchr140069754Silentrs373976739G291G0.11
LUSCchr140067563Silentrs569531431S218S0.73
LUSCchr140064345Missense_MutationNAI138T0.77
OVchr140069729Missense_MutationnovelN283S0.05
OVchr1400716063'Flanknovel0.34
OVchr140064504Missense_MutationNAM157V0.34
OVchr140066250Frame_Shift_InsnovelL187Ffs*200.15
PRADchr140069779Frame_Shift_DelnovelF300Sfs*420.16
READchr140071519Nonsense_MutationnovelE472*0.05
READchr140066301Missense_MutationNAG204E0.56
READchr140070970SilentNAG445G0.32
SARCchr1400406825'Flanknovel0.3
SKCMchr140059453Missense_Mutationrs758617435S36L0.43
SKCMchr140064238Silentrs777626332S102S0.54
SKCMchr140067617SilentnovelC236C0.17
STADchr140070459Missense_MutationNAD383N0.13
STADchr140064242Missense_MutationNAL104M0.07
STADchr140070482Missense_MutationnovelE390D0.47
STADchr140064283SilentnovelT117T0.18
STADchr140067587Silentrs201296194A226A0.26
STADchr1400715353'UTRrs7773786180.3
STADchr140069755Missense_Mutationrs781671919P292T0.11
STADchr140059404Missense_MutationNAA20T0.25
STADchr140070222Missense_MutationNAI353L0.35
UCECchr140066242Missense_MutationNAK184N0.29
UCECchr140066290Missense_Mutationrs749520906F200L0.26
UCECchr1400719843'Flanknovel0.27
UCECchr140069819Missense_Mutationrs377554241R313Q0.37
UCECchr140070158Splice_SitenovelX332_splice0.72
UCECchr140061736Missense_Mutationrs776999876A73V0.38
UCECchr140070165Nonsense_MutationNAQ334*0.21
UCECchr140070242Silentrs376842925T359T0.25
UCECchr140064354Missense_MutationNAL141R0.51
UCECchr140069829SilentnovelK316K0.22
UCECchr140069856Missense_MutationNAE325D0.45
UCECchr140070901Missense_MutationnovelK422N0.52
UCECchr1400715523'Flanknovel0.24
UCECchr1400718373'Flanknovel0.37
UCECchr1400723473'Flanknovel0.3
UCECchr140069771Missense_MutationNAP297L0.23
UCECchr140064288Missense_MutationnovelR119Q0.35
UCECchr140069716Missense_MutationnovelK279Q0.41
UCECchr140070890Missense_MutationnovelY419H0.52
UCECchr1400725283'Flanknovel0.35
UCECchr140070253Missense_MutationnovelI363S0.19
UCECchr140069876Splice_SitenovelX331_splice0.27
UCECchr1400723873'Flanknovel0.44
UCECchr140070933Frame_Shift_InsnovelS434Yfs*50.08
UCECchr140070934Missense_MutationnovelK433N0.08
UCECchr1400715993'Flanknovel0.33
UCECchr140064501Nonsense_MutationNAE156*0.29
UCECchr140069778SilentnovelP299P0.22
UCECchr1400725283'Flanknovel0.39
UCECchr140069797Missense_MutationNAQ306K0.08
UCECchr140064338Missense_MutationnovelE136K0.37
UCECchr1400715993'Flanknovel0.34
UCECchr1400716523'Flanknovel0.42
UCECchr1400725273'Flankrs7730428850.36
UCECchr140067555Nonsense_MutationNAE216*0.17
UCECchr1400406595'Flanknovel0.35
UCECchr1400717703'Flanknovel0.44
UCECchr1400723053'Flanknovel0.6
UCECchr1400718773'Flanknovel0.28
UCECchr1400724253'Flanknovel0.6
UCECchr140061751Missense_Mutationrs766562094T78I0.18
UCECchr140070439Missense_MutationnovelK376T0.07
UCECchr140066245SilentnovelA185A0.3
UCECchr1400717113'Flanknovel0.4

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BLCAAMP0.18389.7487e-09
DLBCDEL0.08330.011841
ESCAAMP0.17390.0024624
LUADAMP0.17830.040181
PAADAMP0.02170.22288
TGCTDEL0.14670.00046313

Survival Analysis
CancerP-value Q-value
KIRC0.00018

Kaplan-Meier Survival Analysis

MESO0.00056

Kaplan-Meier Survival Analysis

ACC0.016

Kaplan-Meier Survival Analysis

SKCM0.00096

Kaplan-Meier Survival Analysis

LUSC0.014

Kaplan-Meier Survival Analysis

COAD0.047

Kaplan-Meier Survival Analysis

PAAD0.014

Kaplan-Meier Survival Analysis

CESC0.00025

Kaplan-Meier Survival Analysis

LAML0.0001

Kaplan-Meier Survival Analysis

KICH0.032

Kaplan-Meier Survival Analysis

LIHC0.00016

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

Drugs

Select Dataset :


Input Drug :


Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000131236 (Gene tree)
Gene ID
10487
Gene Symbol
CAP1
Alias
CAP
Full Name
cyclase associated actin cytoskeleton regulatory protein 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
32,417 bases
Position
chr1:40,040,233-40,072,649
Accession
20040
RBP type
non-canonical RBP
Summary
The protein encoded by this gene is related to the S. cerevisiae CAP protein, which is involved in the cyclic AMP pathway. The human protein is able to interact with other molecules of the same protein, as well as with CAP2 and actin. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Aug 2016]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000417287CAP1-209610-ENSP00000400943176 (aa)-Q5T0R6
ENST00000435719CAP1-214817-ENSP00000412859262 (aa)-Q5T0R9
ENST00000479759CAP1-218888--- (aa)--
ENST00000494114CAP1-219744--- (aa)--
ENST00000424977CAP1-212702-ENSP00000413383201 (aa)-Q5T0R4
ENST00000414893CAP1-208528-ENSP00000398877145 (aa)-Q5T0S3
ENST00000446031CAP1-215273-ENSP0000038997458 (aa)-Q5T0R8
ENST00000372802CAP1-2052964XM_011540515ENSP00000361888474 (aa)XP_011538817Q01518
ENST00000420216CAP1-210668-ENSP00000410586179 (aa)-Q5T0R5
ENST00000461993CAP1-217856--- (aa)--
ENST00000372805CAP1-2062217-ENSP00000361891475 (aa)-Q01518
ENST00000372797CAP1-2033105XM_011540510ENSP00000361883475 (aa)XP_011538812Q01518
ENST00000449311CAP1-216681-ENSP00000398475174 (aa)-Q5T0R7
ENST00000427843CAP1-213739-ENSP00000413656215 (aa)-Q5T0R1
ENST00000372792CAP1-2021496-ENSP00000361878475 (aa)-Q01518
ENST00000340450CAP1-2012592-ENSP00000344832474 (aa)-Q01518
ENST00000414281CAP1-207772-ENSP00000408561208 (aa)-Q5T0R2
ENST00000421589CAP1-211824-ENSP00000403198203 (aa)-Q5T0R3
ENST00000372798CAP1-2041563-ENSP00000361884474 (aa)-Q01518
Gene Model
Click here to download ENSG00000131236's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000131236rs3131667140063357?White blood cell count30595370EFO_0004308
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000131236's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000131236CAP19147.477FBgn0261458capt9948.624Drosophila_melanogaster
ENSG00000131236CAP19933.398YNL138WSRV29734.556Saccharomyces_cerevisiae
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000902cell morphogenesis21873635.IBAProcess
GO:0001667ameboidal-type cell migration-IEAProcess
GO:0003779actin binding21873635.IBAFunction
GO:0005576extracellular region-TASComponent
GO:0005886plasma membrane-IEAComponent
GO:0005925focal adhesion21423176.HDAComponent
GO:0006898receptor-mediated endocytosis-IEAProcess
GO:0007163establishment or maintenance of cell polarity21873635.IBAProcess
GO:0007165signal transduction1406678.TASProcess
GO:0007190activation of adenylate cyclase activity7962207.TASProcess
GO:0008154actin polymerization or depolymerization21873635.IBAProcess
GO:0008179adenylate cyclase binding21873635.IBAFunction
GO:0030864cortical actin cytoskeleton21873635.IBAComponent
GO:0035578azurophil granule lumen-TASComponent
GO:0043312neutrophil degranulation-TASProcess
GO:0070062extracellular exosome19056867.19199708.20458337.23533145.HDAComponent
To top

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us