EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr126269477SilentnovelL504L0.32
BLCAchr126259717Missense_MutationnovelS419F0.17
BLCAchr1262773003'UTRnovel0.14
BLCAchr126259703Missense_MutationNAK414N0.42
BLCAchr126258212SilentnovelL369L0.27
BLCAchr126244224Missense_MutationnovelI38M0.48
BLCAchr126244270Missense_Mutationrs369652785D54N0.19
BLCAchr126257704SilentnovelL337L0.17
BLCAchr126257705Nonsense_MutationnovelK338*0.17
BLCAchr126268583Missense_Mutationrs373834084R481H0.23
BRCAchr126255467Missense_MutationNAG169R0.21
BRCAchr126257712Missense_MutationNAK340I0.23
BRCAchr126269506Missense_MutationNAT514S0.12
BRCAchr126255755Nonsense_MutationNAQ265*0.46
BRCAchr126258180Nonsense_Mutationrs143678426R359*0.19
BRCAchr126255761Missense_MutationNAW267G0.35
BRCAchr126277147Missense_MutationNAE715Q0.44
CESCchr126277159Missense_MutationNAD719H0.25
CESCchr126258190Frame_Shift_InsnovelL363Rfs*220.08
CESCchr126244252Missense_Mutationrs560353875R48C0.36
CESCchr1262780193'UTRnovel0.38
COADchr1262774483'UTRnovel0.3
COADchr126244227SilentnovelS39S0.45
COADchr126244256Missense_MutationnovelC49Y0.35
COADchr126255381Missense_MutationNAH140P0.3
COADchr126259714Missense_MutationnovelA418V0.1
COADchr126255368Missense_Mutationrs141749569G136S0.25
COADchr126259789Missense_MutationNAK443T0.12
DLBCchr126275028Missense_MutationnovelR620L0.31
DLBCchr126258189Missense_Mutationrs753729078E362K0.21
GBMchr126255833Missense_MutationnovelE291K0.24
GBMchr126258188Silentrs756120331S361S0.26
GBMchr126272058Missense_Mutationrs773316750R594H0.3
HNSCchr126255417Missense_MutationnovelS152C0.17
HNSCchr126268515Missense_MutationnovelL458F0.17
HNSCchr126269548Missense_MutationnovelR528T0.07
KIRCchr126258194SilentNAL363L0.28
KIRPchr126276587Missense_MutationNAH652L0.61
LAMLchr126255802SilentnovelS280S0.07
LAMLchr126255848Missense_MutationnovelQ296E0.34
LGGchr126255535SilentnovelS191S0.38
LGGchr126271060Nonsense_MutationnovelE566*0.48
LIHCchr126259760Silentrs534974823A433A0.31
LIHCchr126276755Missense_MutationnovelI708N0.28
LIHCchr126275057Missense_MutationnovelT630A0.65
LUADchr126259771Missense_MutationnovelH437L0.37
LUADchr126255853Missense_MutationnovelM297I0.13
LUADchr126255854Nonsense_MutationnovelE298*0.11
LUADchr126259640Missense_MutationNAF393L0.07
LUADchr126277292SilentNA*763*0.12
LUADchr126277245Missense_MutationnovelM747I0.09
LUADchr126239794Missense_MutationNAQ4L0.17
LUSCchr126255515Nonsense_MutationnovelE185*0.22
LUSCchr126269534SilentNAT523T0.21
LUSCchr126255260Missense_MutationNAG100W0.28
LUSCchr126276671Missense_MutationNAC680S0.38
MESOchr126277237Missense_MutationnovelT745P0.42
OVchr126277209Frame_Shift_DelnovelQ735Hfs*90.06
OVchr1262773423'UTRnovel0.17
PAADchr126255489Missense_Mutationrs756429210A176V0.14
PRADchr1262774113'UTRnovel0.29
PRADchr126255843Missense_Mutationrs764919627R294H0.48
PRADchr126277213Missense_Mutationrs779658026R737C0.41
READchr126259748Silentrs773036437S429S0.22
READchr126277273Nonsense_MutationnovelE757*0.4
SARCchr1262782443'UTRnovel0.08
SKCMchr126259701Missense_MutationNAK414E0.39
SKCMchr126255569Missense_MutationnovelH203Y0.3
SKCMchr126271058Missense_MutationNAP565Q0.08
SKCMchr126271097Missense_Mutationrs747760374S578L0.92
SKCMchr126255249Missense_MutationNAP96L0.31
SKCMchr126276582SilentNAQ650Q0.19
SKCMchr126255353Missense_MutationNAR131G0.41
SKCMchr126255269Missense_MutationnovelP103S0.39
SKCMchr126244193Missense_MutationNAS28F0.33
SKCMchr126244193Missense_MutationNAS28F0.21
SKCMchr126268492Missense_MutationNAR451C0.36
SKCMchr126257606Missense_MutationnovelG305R0.34
SKCMchr126257607Missense_MutationnovelG305E0.34
SKCMchr126244233SilentnovelP41P0.61
SKCMchr126255672Missense_Mutationrs779280111R237Q0.11
SKCMchr126268492Missense_MutationNAR451C0.22
STADchr126268632SilentnovelQ497Q0.24
STADchr126268568Missense_MutationnovelI476N0.43
STADchr126257675Missense_MutationNAS328G0.13
STADchr126276592Missense_Mutationrs772262341R654C0.27
STADchr126271079Nonsense_MutationnovelW572*0.41
STADchr1262773773'UTRnovel0.48
STADchr126239825Silentrs201779964H14H0.14
STADchr126255606Missense_MutationNAS215N0.34
TGCTchr126258142Splice_SitenovelX346_splice0.16
THCAchr1262773593'UTRnovel0.06
THCAchr126259802Missense_MutationnovelR447S0.13
UCECchr1262781743'UTRnovel0.19
UCECchr126255404Missense_MutationnovelL148I0.22
UCECchr126255838Missense_MutationNAL292F0.25
UCECchr126268599SilentNAL486L0.52
UCECchr1262777843'UTRnovel0.2
UCECchr126244170Silentrs755493447S20S0.17
UCECchr1262776533'UTRnovel0.41
UCECchr126255384Missense_MutationnovelS141F0.41
UCECchr1262785913'UTRnovel0.22
UCECchr126255368Missense_Mutationrs141749569G136S0.28
UCECchr126276621SilentNAS663S0.17
UCECchr126255277SilentNAK105K0.25
UCECchr1262774213'UTRnovel0.16
UCECchr126255515Nonsense_MutationnovelE185*0.18
UCECchr126269511Silentrs776360857L516L0.29
UCECchr1262784393'UTRrs7616053140.32
UCECchr126277278Missense_MutationnovelN758K0.29
UCECchr126271093Missense_Mutationrs777194985D577N0.5
UCECchr126255636Missense_MutationNAA225V0.16
UCECchr126257675Missense_MutationNAS328G0.22
UCECchr1262779103'UTRnovel0.31
UCECchr1262785773'UTRnovel0.31
UCECchr1262397705'UTRnovel0.1
UCECchr126255801Missense_MutationnovelS280Y0.12
UCECchr126268526Missense_MutationnovelC462Y0.53
UCECchr126271087Nonsense_Mutationrs560358188R575*0.38
UCECchr126258180Nonsense_Mutationrs143678426R359*0.39
UCECchr1262776233'UTRnovel0.32
UCECchr1262786513'UTRrs5565331460.44
UCECchr1262772973'UTRnovel0.59
UCECchr1262787463'UTRnovel0.18
UCECchr126258188Silentrs756120331S361S0.43
UCECchr126259703Missense_MutationNAK414N0.36
UCECchr126244285Missense_MutationnovelA59S0.14
UCECchr126257696Missense_Mutationrs772525914H335Y0.2
UCECchr1262785003'UTRnovel0.1
UCECchr1262783343'UTRnovel0.49
UCECchr1262784403'UTRnovel0.39
UCECchr1262783183'UTRnovel0.13
UCECchr126268540Missense_MutationNAE467K0.53
UCECchr126255285Missense_MutationNAS108Y0.35
UCECchr126269487Missense_MutationNAE508K0.48
UCECchr126268492Missense_MutationNAR451C0.09
UCECchr126276561SilentnovelI643I0.22
UCECchr126277259Missense_MutationnovelA752V0.25
UCECchr1262774213'UTRnovel0.28
UCECchr126255238SilentnovelA92A0.37
UCECchr1262780853'UTRnovel0.47
UCECchr1262781913'UTRrs5677247840.16
UCECchr126255660Missense_MutationnovelA233V0.42
UCECchr1262774633'UTRnovel0.38

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CESCDEL0.09150.00029523
CHOLDEL0.77783.3987e-23
COADDEL0.32594.7302e-24
DLBCDEL0.10420.011841
ESCADEL0.29350.0012162
HNSCDEL0.1367.0766e-07
KIRCDEL0.14962.3538e-09
KIRPDEL0.17361.462e-09
LIHCDEL0.34861.6679e-20
LUADDEL0.17050.0024765
LUSCDEL0.37522.5882e-07
MESODEL0.26442.434e-07
READDEL0.42.1758e-10
TGCTDEL0.160.00046313

Survival Analysis
CancerP-value Q-value
THYM0.025

Kaplan-Meier Survival Analysis

STAD0.019

Kaplan-Meier Survival Analysis

SARC0.0021

Kaplan-Meier Survival Analysis

MESO0.00026

Kaplan-Meier Survival Analysis

ACC0.00016

Kaplan-Meier Survival Analysis

PCPG0.048

Kaplan-Meier Survival Analysis

CESC0.047

Kaplan-Meier Survival Analysis

UCEC0.029

Kaplan-Meier Survival Analysis

LIHC0.00012

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

THCA0.044

Kaplan-Meier Survival Analysis

LUAD0.036

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000130695 (Gene tree)
Gene ID
64793
Gene Symbol
CEP85
Alias
DKFZP434L0117|CCDC21
Full Name
centrosomal protein 85
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
44,886 bases
Position
chr1:26,234,153-26,279,038
Accession
25309
RBP type
non-canonical RBP
Summary
This gene encodes a protein that belongs to the centrosome-associated family of proteins. The centrosome is a subcellular organelle in the animal cell that functions as a microtubule organizing center and is involved in cell-cycle progression. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000491670CEP85-207941--- (aa)--
ENST00000252992CEP85-2013935XM_024449198ENSP00000252992762 (aa)XP_024304966Q6P2H3
ENST00000451429CEP85-2023922XM_017002105ENSP00000417002761 (aa)XP_016857594Q6P2H3
ENST00000640292CEP85-2082663-ENSP00000492362711 (aa)-Q6P2H3
ENST00000469609CEP85-2052384--- (aa)--
ENST00000453146CEP85-2032821-ENSP00000391790435 (aa)-H7BZW2
ENST00000480446CEP85-206435--- (aa)--
ENST00000468163CEP85-204453--- (aa)--
Gene Model
Click here to download ENSG00000130695's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000130695Transforming Growth Factor beta9E-623251661
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000130695rs10902723126242051GObesity-related traits23251661[NR] pg/mL increase0.01EFO_0004818
ENSG00000130695rs11577318126275079GGranulocyte percentage of myeloid white cells27863252[0.022-0.04] unit increase0.03076225EFO_0007997
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000130695's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000242pericentriolar material26220856.IDAComponent
GO:0000922spindle pole21399614.IDAComponent
GO:0005515protein binding18985028.21044950.26220856.IPIFunction
GO:0005730nucleolus21399614.IDAComponent
GO:0005739mitochondrion-IDAComponent
GO:0005794Golgi apparatus-IDAComponent
GO:0005813centrosome21873635.IBAComponent
GO:0005813centrosome21399614.26220856.IDAComponent
GO:0005815microtubule organizing center-IDAComponent
GO:0005829cytosol-IDAComponent
GO:0006469negative regulation of protein kinase activity26220856.IMPProcess
GO:0007059chromosome segregation-IEAProcess
GO:0046602regulation of mitotic centrosome separation26220856.IMPProcess
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