EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
17178857Multiple interacting oncogenes on the 8p11-p12 amplicon in human breast cancer.Cancer Res2006 Dec 15Yang ZQ-

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1918309751Silentrs764771715A85A0.26
BLCAchr19183230425'UTRnovel0.3
BRCAchr1918312691SilentnovelL19L0.05
BRCAchr1918312611Missense_MutationnovelT46M0.06LSM
CESCchr19183073063'UTRnovel0.28
CESCchr19183072513'UTRnovel0.6
COADchr1918309837Missense_MutationNAP57S0.21
COADchr19183073073'UTRnovel0.63
COADchr1918309834Missense_Mutationrs764476513E58K0.43
COADchr1918312655SilentNAS31S0.42
HNSCchr1918309687Missense_MutationnovelA107T0.16
HNSCchr1918309863Splice_Siters112426584X49_splice0.19
KIRPchr19183073983'UTRnovel0.25
LIHCchr19183230835'UTRnovel0.38
LUSCchr1918309847Missense_MutationNAF53L0.23LSM
LUSCchr1918309680Missense_MutationnovelR109L0.27
LUSCchr1918316061Missense_MutationNAP3L0.39LSM
LUSCchr1918312638Missense_MutationNAN37S0.33LSM
OVchr1918316060Frame_Shift_InsnovelL4Afs*150.2LSM
PAADchr1918309787Silentrs766768563D73D0.19
PAADchr1918309834Missense_Mutationrs764476513E58K0.16
SKCMchr1918309694Missense_Mutationrs748477177M104I0.25
STADchr1918309703SilentnovelG101G0.1
STADchr1918309742Silentrs765934857R88R0.39
STADchr1918309778Silentrs138296949I76I0.17
UCECchr1918309842Missense_Mutationrs781537682R55Q0.3LSM
UCECchr19183230615'UTRnovel0.6
UCECchr19183073733'UTRnovel0.67
UCECchr1918309687Missense_MutationnovelA107T0.52
UCECchr1918309778Silentrs138296949I76I0.36
UCECchr1918312652SilentNAC32C0.27
UCECchr19183072863'UTRnovel0.35
UCECchr1918307479SilentnovelQ135Q0.13
UCECchr1918309798Missense_MutationNAR70C0.38
UCECchr1918309753Missense_MutationnovelA85P0.39
UCECchr19183074183'UTRrs5350294360.41
UCECchr19183074183'UTRrs5350294360.39
UCECchr19183072923'UTRnovel0.47
UCECchr19183073683'UTRnovel0.42
UCECchr1918309789Missense_Mutationrs780420380D73N0.48
UCECchr1918309681Nonsense_MutationNAR109*0.31
UCECchr1918312652SilentNAC32C0.3

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
READDEL0.07880.23023
THCADEL0.0120.090402
THYMDEL0.02440.10691

Survival Analysis
CancerP-value Q-value
KIRC0.0005

Kaplan-Meier Survival Analysis

STAD0.033

Kaplan-Meier Survival Analysis

ACC0.00011

Kaplan-Meier Survival Analysis

SKCM0.00039

Kaplan-Meier Survival Analysis

LAML0.00014

Kaplan-Meier Survival Analysis

UCEC0.034

Kaplan-Meier Survival Analysis

LIHC0.0005

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

LUAD0.02

Kaplan-Meier Survival Analysis

UVM0.0019

Kaplan-Meier Survival Analysis

OV0.002

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000130520 (Gene tree)
Gene ID
25804
Gene Symbol
LSM4
Alias
YER112W
Full Name
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
17,045 bases
Position
chr19:18,306,230-18,323,274
Accession
17259
RBP type
canonical RBP
Summary
This gene encodes a member of the LSm family of RNA-binding proteins. LSm proteins form stable heteromers that bind specifically to the 3'-terminal oligo(U) tract of U6 snRNA and may play a role in pre-mRNA splicing by mediating U4/U6 snRNP formation. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Nov 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000469468LSMPF01423.223.2e-1611
ENSP00000477443LSMPF01423.221e-1511
ENSP00000475950LSMPF01423.223.3e-1311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
25449834Proteomic analysis of oil bodies in mature Jatropha curcas seeds with different lipid content.J Proteomics2015 Jan 15Liu Hdoi: 10.1016/j.jprot.2014.10.013
22615807Crystal structures of Lsm3, Lsm4 and Lsm5/6/7 from Schizosaccharomyces pombe.PLoS One2012Wu Ddoi: 10.1371/journal.pone.0036768
24810581Validation of potential reference genes for qPCR in maize across abiotic stresses, hormone treatments, and tissue types.PLoS One2014 May 8Lin Ydoi: 10.1371/journal.pone.0095445
24132150A comparative proteomic analysis of Pinellia ternata leaves exposed to heat stress.Int J Mol Sci2013 Oct 15Zhu Ydoi: 10.3390/ijms141020614.
10023572The circadian system of Arabidopsis thaliana: forward and reverse genetic approaches.Chronobiol Int1999 JanStaiger D-
2443491Cloning of a full-length complementary DNA for an Artemia salina glycine-rich protein. Structural relationship with RNA binding proteins.J Biol Chem1987 Oct 5Cruz-Alvarez M-
1302645RNA binding characteristics of a 16 kDa glycine-rich protein from maize.Plant J1992 NovLudevid MD-
9522463The expression of an abscisic acid-responsive glycine-rich protein coincides with the level of seed dormancy in Fagus sylvatica.Plant Cell Physiol1997 DecNicolas C-
8054987A light- and temperature-entrained circadian clock controls expression of transcripts encoding nuclear proteins with homology to RNA-binding proteins in meristematic tissue.Plant J1994 JunHeintzen C-
11972043A family of RRM-type RNA-binding proteins specific to plant mitochondria.Proc Natl Acad Sci U S A2002 Apr 30Vermel M-
20233706[Cloning and stress tolerance analysis of an LbGRP gene in Limonium bicolor].Yi Chuan2010 MarPan Y-
26889112Proteome Analysis of Disease Resistance against Ralstonia solanacearum in Potato Cultivar CT206-10.Plant Pathol J2016 FebPark Sdoi: 10.5423/PPJ.OA.05.2015.0076
23555221A circadian clock-regulated toggle switch explains AtGRP7 and AtGRP8 oscillations in Arabidopsis thaliana.PLoS Comput Biol2013Schmal Cdoi: 10.1371/journal.pcbi.1002986
26032221Changes in the proteome of pad2-1, a glutathione depleted Arabidopsis mutant, during Pseudomonas syringae infection.J Proteomics2015 Aug 3Datta Rdoi: 10.1016/j.jprot.2015.04.036
29615482Defining essential elements and genetic interactions of the yeast Lsm2-8 ring and demonstration that essentiality of Lsm2-8 is bypassed via overexpression of U6 snRNA or the U6 snRNP subunit Prp24.RNA2018 JunRoth AJdoi: 10.1261/rna.066175.118
31242257Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii.PLoS One2019 Jun 26Yang Wdoi: 10.1371/journal.pone.0218938
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000593564LSM4-202656--- (aa)--
ENST00000594828LSM4-204807-ENSP00000477443238 (aa)-V9GZ56
ENST00000600289LSM4-2061113-ENSP0000046902869 (aa)-M0QXB0
ENST00000593829LSM4-2031908-ENSP00000469468139 (aa)-Q9Y4Z0
ENST00000597776LSM4-205446--- (aa)--
ENST00000252816LSM4-201986-ENSP00000475950125 (aa)-U3KQK1
Gene Model
Click here to download ENSG00000130520's gene model file
Pathways
Pathway IDPathway NameSource
hsa03018RNA degradationKEGG
hsa03040SpliceosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000130520Emotions7E-627089181
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000130520rs1480712541918310252GInterleukin-2 receptor antagonist levels27989323[0.39-1.01] SD units increase0.6978EFO_0008332
ENSG00000130520rs1125959441918314948?Red blood cell count30595370EFO_0004305
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000130520's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000130520LSM45234.722ENSG00000100028SNRPD35934.722
ENSG00000130520LSM47032.000ENSG00000204392LSM28235.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000130520LSM49975.000ENSAPOG00000005643lsm45898.864Acanthochromis_polyacanthus
ENSG00000130520LSM4100100.000ENSAMEG00000011162LSM495100.000Ailuropoda_melanoleuca
ENSG00000130520LSM49977.622ENSAOCG00000006414lsm45998.864Amphiprion_ocellaris
ENSG00000130520LSM49975.000ENSAPEG00000006238lsm45998.864Amphiprion_percula
ENSG00000130520LSM49975.000ENSATEG00000016559lsm45898.864Anabas_testudineus
ENSG00000130520LSM4100100.000ENSANAG00000034659LSM4100100.000Aotus_nancymaae
ENSG00000130520LSM49975.000ENSACLG00000022738lsm46098.864Astatotilapia_calliptera
ENSG00000130520LSM49984.058ENSAMXG00000016932lsm46297.727Astyanax_mexicanus
ENSG00000130520LSM4100100.000ENSBTAG00000008578LSM4100100.000Bos_taurus
ENSG00000130520LSM49958.824WBGene00003078lsm-46775.904Caenorhabditis_elegans
ENSG00000130520LSM4100100.000ENSCJAG00000014171LSM4100100.000Callithrix_jacchus
ENSG00000130520LSM499100.000ENSCAFG00000014900LSM490100.000Canis_familiaris
ENSG00000130520LSM4100100.000ENSCAFG00020012137LSM4100100.000Canis_lupus_dingo
ENSG00000130520LSM4100100.000ENSCHIG00000010928LSM491100.000Capra_hircus
ENSG00000130520LSM410099.281ENSTSYG00000030906LSM410099.281Carlito_syrichta
ENSG00000130520LSM410097.842ENSCAPG00000014140LSM410097.842Cavia_aperea
ENSG00000130520LSM410097.842ENSCPOG00000024117LSM410097.842Cavia_porcellus
ENSG00000130520LSM4100100.000ENSCCAG00000036308LSM4100100.000Cebus_capucinus
ENSG00000130520LSM4100100.000ENSCATG00000029311LSM4100100.000Cercocebus_atys
ENSG00000130520LSM410096.403ENSCLAG00000010828LSM410096.403Chinchilla_lanigera
ENSG00000130520LSM4100100.000ENSCSAG00000005370LSM4100100.000Chlorocebus_sabaeus
ENSG00000130520LSM410082.014ENSCPBG00000012925LSM410089.928Chrysemys_picta_bellii
ENSG00000130520LSM49973.529ENSCING00000007519-6992.045Ciona_intestinalis
ENSG00000130520LSM49973.529ENSCSAVG00000008596-7093.182Ciona_savignyi
ENSG00000130520LSM4100100.000ENSCANG00000043686LSM4100100.000Colobus_angolensis_palliatus
ENSG00000130520LSM410095.683ENSCGRG00001014436Lsm410095.683Cricetulus_griseus_chok1gshd
ENSG00000130520LSM410095.200ENSCGRG00000009398Lsm410095.652Cricetulus_griseus_crigri
ENSG00000130520LSM49975.000ENSCSEG00000016127lsm46297.727Cynoglossus_semilaevis
ENSG00000130520LSM49874.797ENSCVAG00000021828lsm45697.260Cyprinodon_variegatus
ENSG00000130520LSM49977.536ENSCVAG00000010601lsm46297.727Cyprinodon_variegatus
ENSG00000130520LSM49778.723ENSDARG00000023852lsm46298.864Danio_rerio
ENSG00000130520LSM410097.842ENSDORG00000024225Lsm410097.842Dipodomys_ordii
ENSG00000130520LSM49969.118FBgn0032240CG177685788.636Drosophila_melanogaster
ENSG00000130520LSM49998.387ENSETEG00000007762-10098.387Echinops_telfairi
ENSG00000130520LSM49972.059ENSEBUG00000003639-5093.333Eptatretus_burgeri
ENSG00000130520LSM4100100.000ENSECAG00000010141LSM457100.000Equus_caballus
ENSG00000130520LSM49584.328ENSELUG00000012821lsm46698.851Esox_lucius
ENSG00000130520LSM4100100.000ENSFCAG00000040580LSM4100100.000Felis_catus
ENSG00000130520LSM49981.159ENSFALG00000009478LSM49989.855Ficedula_albicollis
ENSG00000130520LSM410096.800ENSFDAG00000010124LSM410097.101Fukomys_damarensis
ENSG00000130520LSM48191.379ENSFHEG00000016353lsm49891.379Fundulus_heteroclitus
ENSG00000130520LSM49774.627ENSGMOG00000007729lsm45998.851Gadus_morhua
ENSG00000130520LSM410081.295ENSGALG00000003385LSM410089.928Gallus_gallus
ENSG00000130520LSM49975.000ENSGAFG00000004903lsm45594.521Gambusia_affinis
ENSG00000130520LSM49975.000ENSGACG00000008140lsm45998.864Gasterosteus_aculeatus
ENSG00000130520LSM410082.014ENSGAGG00000017812LSM410089.928Gopherus_agassizii
ENSG00000130520LSM4100100.000ENSGGOG00000012914-100100.000Gorilla_gorilla
ENSG00000130520LSM410097.122ENSHGLG00000006568LSM410097.122Heterocephalus_glaber_female
ENSG00000130520LSM49975.000ENSHGLG00100007894LSM4100100.000Heterocephalus_glaber_male
ENSG00000130520LSM49977.372ENSHCOG00000008819lsm46298.864Hippocampus_comes
ENSG00000130520LSM49984.058ENSIPUG00000005368Lsm46298.864Ictalurus_punctatus
ENSG00000130520LSM4100100.000ENSSTOG00000016494LSM4100100.000Ictidomys_tridecemlineatus
ENSG00000130520LSM410097.122ENSJJAG00000017420Lsm410097.122Jaculus_jaculus
ENSG00000130520LSM49975.000ENSKMAG00000005073lsm46197.727Kryptolebias_marmoratus
ENSG00000130520LSM49975.000ENSLBEG00000027930lsm47394.545Labrus_bergylta
ENSG00000130520LSM49983.212ENSLACG00000015861LSM49883.212Latimeria_chalumnae
ENSG00000130520LSM49383.721ENSLOCG00000002025lsm46297.727Lepisosteus_oculatus
ENSG00000130520LSM410098.400ENSLAFG00000017459LSM49998.551Loxodonta_africana
ENSG00000130520LSM4100100.000ENSMFAG00000031194LSM4100100.000Macaca_fascicularis
ENSG00000130520LSM4100100.000ENSMMUG00000004405LSM4100100.000Macaca_mulatta
ENSG00000130520LSM4100100.000ENSMNEG00000042899LSM4100100.000Macaca_nemestrina
ENSG00000130520LSM4100100.000ENSMLEG00000027948LSM4100100.000Mandrillus_leucophaeus
ENSG00000130520LSM49979.710ENSMAMG00000006190lsm47794.545Mastacembelus_armatus
ENSG00000130520LSM49975.000ENSMZEG00005016420lsm46098.864Maylandia_zebra
ENSG00000130520LSM49982.734ENSMGAG00000004976LSM49989.855Meleagris_gallopavo
ENSG00000130520LSM410099.281ENSMICG00000000222LSM410099.281Microcebus_murinus
ENSG00000130520LSM410096.403ENSMOCG00000020861Lsm410096.403Microtus_ochrogaster
ENSG00000130520LSM49995.968ENSMODG00000015044-10095.968Monodelphis_domestica
ENSG00000130520LSM49977.143ENSMALG00000018159lsm46297.727Monopterus_albus
ENSG00000130520LSM410096.403MGP_CAROLIEiJ_G0031158Lsm410096.403Mus_caroli
ENSG00000130520LSM410096.403ENSMUSG00000031848Lsm410096.403Mus_musculus
ENSG00000130520LSM410096.403MGP_PahariEiJ_G0021623Lsm410096.403Mus_pahari
ENSG00000130520LSM410096.403MGP_SPRETEiJ_G0032276Lsm410096.403Mus_spretus
ENSG00000130520LSM4100100.000ENSMPUG00000015589LSM4100100.000Mustela_putorius_furo
ENSG00000130520LSM4100100.000ENSMLUG00000004010LSM499100.000Myotis_lucifugus
ENSG00000130520LSM410096.403ENSNGAG00000008644Lsm410096.403Nannospalax_galili
ENSG00000130520LSM49774.627ENSNBRG00000022150lsm45498.851Neolamprologus_brichardi
ENSG00000130520LSM49992.742ENSMEUG00000013229LSM410092.742Notamacropus_eugenii
ENSG00000130520LSM49993.548ENSOPRG00000005575LSM410083.065Ochotona_princeps
ENSG00000130520LSM410073.381ENSODEG00000011712-10073.381Octodon_degus
ENSG00000130520LSM410097.122ENSODEG00000020549-10097.122Octodon_degus
ENSG00000130520LSM410087.050ENSODEG00000004519-10074.820Octodon_degus
ENSG00000130520LSM49975.000ENSONIG00000012724lsm46098.864Oreochromis_niloticus
ENSG00000130520LSM49769.014ENSOANG00000007434LSM47893.407Ornithorhynchus_anatinus
ENSG00000130520LSM49985.106ENSORLG00000008391lsm46197.727Oryzias_latipes
ENSG00000130520LSM49975.000ENSORLG00020014829lsm46197.727Oryzias_latipes_hni
ENSG00000130520LSM49985.106ENSORLG00015010205lsm46197.727Oryzias_latipes_hsok
ENSG00000130520LSM410083.453ENSOMEG00000003606lsm46197.727Oryzias_melastigma
ENSG00000130520LSM49774.627ENSOGAG00000027992LSM460100.000Otolemur_garnettii
ENSG00000130520LSM495100.000ENSOARG00000012553LSM494100.000Ovis_aries
ENSG00000130520LSM4100100.000ENSPPAG00000044045-100100.000Pan_paniscus
ENSG00000130520LSM4100100.000ENSPPRG00000018264LSM4100100.000Panthera_pardus
ENSG00000130520LSM4100100.000ENSPTIG00000006306LSM4100100.000Panthera_tigris_altaica
ENSG00000130520LSM4100100.000ENSPTRG00000031470LSM4100100.000Pan_troglodytes
ENSG00000130520LSM4100100.000ENSPANG00000014399LSM4100100.000Papio_anubis
ENSG00000130520LSM49981.752ENSPKIG00000006154lsm46298.864Paramormyrops_kingsleyae
ENSG00000130520LSM49981.159ENSPSIG00000012358LSM410089.855Pelodiscus_sinensis
ENSG00000130520LSM410096.403ENSPEMG00000001358Lsm410096.403Peromyscus_maniculatus_bairdii
ENSG00000130520LSM49975.000ENSPFOG00000000570lsm46381.513Poecilia_formosa
ENSG00000130520LSM49976.389ENSPLAG00000016267lsm49377.444Poecilia_latipinna
ENSG00000130520LSM49878.417ENSPMEG00000016378lsm49377.444Poecilia_mexicana
ENSG00000130520LSM4100100.000ENSPPYG00000009736LSM4100100.000Pongo_abelii
ENSG00000130520LSM49998.387ENSPCAG00000008513LSM410098.387Procavia_capensis
ENSG00000130520LSM410099.281ENSPCOG00000019837LSM410099.281Propithecus_coquereli
ENSG00000130520LSM4100100.000ENSPVAG00000015383LSM4100100.000Pteropus_vampyrus
ENSG00000130520LSM49975.000ENSPNYG00000016794lsm46098.864Pundamilia_nyererei
ENSG00000130520LSM49683.582ENSPNAG00000016598lsm46598.851Pygocentrus_nattereri
ENSG00000130520LSM410096.403ENSRNOG00000019572Lsm410096.403Rattus_norvegicus
ENSG00000130520LSM4100100.000ENSRBIG00000024717LSM4100100.000Rhinopithecus_bieti
ENSG00000130520LSM4100100.000ENSRROG00000045706LSM4100100.000Rhinopithecus_roxellana
ENSG00000130520LSM46851.064YER112WLSM45041.935Saccharomyces_cerevisiae
ENSG00000130520LSM4100100.000ENSSBOG00000022455LSM4100100.000Saimiri_boliviensis_boliviensis
ENSG00000130520LSM410096.403ENSSHAG00000011559LSM410096.403Sarcophilus_harrisii
ENSG00000130520LSM49980.292ENSSFOG00015021067lsm49975.540Scleropages_formosus
ENSG00000130520LSM49975.000ENSSMAG00000021020lsm49572.535Scophthalmus_maximus
ENSG00000130520LSM49975.000ENSSDUG00000009588lsm45398.864Seriola_dumerili
ENSG00000130520LSM49975.000ENSSLDG00000006827lsm45298.864Seriola_lalandi_dorsalis
ENSG00000130520LSM49774.627ENSSPUG00000010166LSM45698.851Sphenodon_punctatus
ENSG00000130520LSM49975.000ENSSPAG00000011615lsm45898.864Stegastes_partitus
ENSG00000130520LSM4100100.000ENSSSCG00000034314LSM4100100.000Sus_scrofa
ENSG00000130520LSM49975.000ENSTRUG00000021737lsm46296.591Takifugu_rubripes
ENSG00000130520LSM49980.714ENSTNIG00000010191lsm46197.727Tetraodon_nigroviridis
ENSG00000130520LSM4100100.000ENSUAMG00000000665LSM499100.000Ursus_americanus
ENSG00000130520LSM4100100.000ENSUMAG00000009013LSM4100100.000Ursus_maritimus
ENSG00000130520LSM4100100.000ENSVVUG00000008136LSM471100.000Vulpes_vulpes
ENSG00000130520LSM410091.367ENSXETG00000024933lsm410089.209Xenopus_tropicalis
ENSG00000130520LSM49975.000ENSXMAG00000026672lsm46380.672Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000387spliceosomal snRNP assembly21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome28781166.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0000932P-body21873635.IBAComponent
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0005515protein binding15231747.15905169.16189514.19628699.20584987.20696395.21988832.22365833.25416956.IPIFunction
GO:0005634nucleus26912367.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005688U6 snRNP21873635.IBAComponent
GO:0005829cytosol15905169.IDAComponent
GO:0005829cytosol-TASComponent
GO:0008380RNA splicing10523320.TASProcess
GO:0016020membrane15905169.IDAComponent
GO:0017070U6 snRNA binding21873635.IBAFunction
GO:0032991protein-containing complex15905169.IDAComponent
GO:0033962cytoplasmic mRNA processing body assembly21873635.IBAProcess
GO:0042731PH domain binding15905169.IDAFunction
GO:0043005neuron projection-IEAComponent
GO:0043928exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay-TASProcess
GO:0046540U4/U6 x U5 tri-snRNP complex26912367.IDAComponent
GO:0071005U2-type precatalytic spliceosome28781166.IDAComponent
GO:0120115Lsm2-8 complex10523320.IDAComponent
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