EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr175002087Frame_Shift_DelnovelS131Mfs*140.21
BLCAchr175002528Missense_MutationNAS165C0.69
BLCAchr175001246Nonsense_MutationNAQ70*0.22
BLCAchr175002554SilentNAL174L0.21
BLCAchr175022580SilentNAL833L0.29
BLCAchr175007489Missense_MutationNAG480R0.18
BLCAchr1750241673'UTRnovel0.1
BLCAchr175002073SilentNAL126L0.42
BLCAchr175023580Missense_Mutationrs779132007P914L0.49
BRCAchr175003675Missense_MutationNAG262S0.43
BRCAchr175002791Silentrs375834968I223I0.15
BRCAchr175022395Missense_Mutationrs780072767E772Q0.18
BRCAchr175000303SilentNAE19E0.21
BRCAchr175002517Missense_MutationNAK161N0.41
BRCAchr175002124Missense_MutationNAE143D0.2
BRCAchr175004976Missense_MutationNAG381R0.18
BRCAchr175023961Missense_Mutationrs201887996R1041Q0.13
CESCchr175020013Missense_MutationnovelP562S0.33
CESCchr175022181Silentrs763581921P700P0.31
CESCchr175022415Missense_MutationNAK778N0.24
CESCchr175022265SilentNAI728I0.37
CESCchr175000779Missense_Mutationrs377337240I38M0.4
CESCchr175013695Missense_MutationnovelE512Q0.41
CHOLchr175007289SilentnovelL454L0.12
COADchr175002534Missense_Mutationrs199962814R167Q0.32
COADchr175020527Missense_Mutationrs771628064R596C0.22
COADchr175023759Missense_Mutationrs550136320D974N0.26
COADchr175000837Missense_MutationNAS58P0.42
COADchr175022560Missense_MutationNAG827W0.43
COADchr175020527Missense_Mutationrs771628064R596C0.23
COADchr175023717Frame_Shift_DelNAL962Cfs*1260.31
COADchr175020591Missense_MutationnovelP617L0.43
COADchr175022631SilentnovelQ850Q0.38
COADchr175023975Missense_MutationnovelA1046T0.46
COADchr175024005Frame_Shift_DelnovelK1057Sfs*310.14
COADchr175000283Missense_Mutationrs756071061R13W0.2
COADchr175024072Frame_Shift_InsnovelY1081Ifs*150.28
COADchr175007293Missense_MutationNAE456K0.24
COADchr175007021SilentNAE424E0.37
ESCAchr175023559Missense_Mutationrs199975737R907H0.48
GBMchr175023615Missense_Mutationrs765376957R926W0.09
GBMchr175020497Missense_MutationnovelR586G0.11
GBMchr175002769Missense_MutationnovelR216H0.33
GBMchr175023651Missense_MutationNAR938C0.22
GBMchr175020665Missense_MutationnovelE642K0.26
GBMchr175022236Missense_Mutationrs147429300R719C0.44
GBMchr175022278Frame_Shift_DelnovelR733Gfs*150.12
HNSCchr175003865SilentnovelI271I0.23
HNSCchr175022210Missense_MutationnovelR710H0.21
HNSCchr175007049Missense_MutationnovelQ434K0.22
HNSCchr175020535SilentnovelN598N0.29
HNSCchr175020536Missense_MutationnovelH599Y0.29
HNSCchr175023532Missense_MutationnovelA898V0.21
KIRCchr175022115Missense_MutationnovelD678E0.06
KIRCchr175013661SilentNAH500H0.41
KIRCchr175023669Missense_MutationnovelQ944E0.31
KIRCchr175020608Missense_MutationNAD623N0.67
LAMLchr175002497Nonsense_MutationNAR155*0.48
LAMLchr175014748Missense_MutationnovelG526D0.71
LGGchr175002111Missense_MutationnovelS139F0.05
LGGchr175004593Missense_Mutationrs769968364A323T0.31
LIHCchr175024130Missense_MutationnovelK1097N0.15
LIHCchr175002119Missense_MutationNAV142M0.45
LIHCchr175020512Missense_MutationNAK591E0.17
LUADchr175004602Missense_MutationnovelS326C0.4
LUADchr175004579Missense_MutationnovelR318L0.36
LUADchr175002539Missense_Mutationrs587777198R169W0.28
LUADchr175002539Missense_Mutationrs587777198R169W0.24
LUADchr175020677Missense_MutationnovelR646W0.52
LUADchr175020678Missense_MutationnovelR646K0.56
LUADchr175023924Missense_MutationnovelP1029S0.33
LUADchr175013730Splice_RegionnovelT523T0.41
LUADchr175022102Frame_Shift_InsnovelD675Gfs*50.05
LUADchr1750242973'UTRnovel0.25
LUADchr175023977Silentrs547354388A1046A0.38
LUSCchr175023787Missense_MutationnovelS983N0.2
LUSCchr175007281Missense_MutationNAA452P0.64
LUSCchr175024139SilentnovelG1100G0.24
LUSCchr175002572Missense_MutationnovelD180Y0.45
LUSCchr175004924SilentnovelI363I0.08
LUSCchr175003661Missense_MutationNAS257F0.89
LUSCchr175003662SilentNAS257S0.89
LUSCchr175004599Missense_MutationnovelL325V0.07
LUSCchr175023486Missense_MutationnovelE883K0.42
OVchr175004043Missense_MutationnovelV304M0.08
OVchr175020541Silentrs200771979P600P0.24
OVchr175007308Missense_MutationnovelK461Q0.26
OVchr175007035Missense_MutationnovelP429H0.27
OVchr175003641SilentnovelA250A0.39
PAADchr175002630Missense_MutationnovelG199E0.09
PRADchr175024090Missense_MutationnovelP1084L0.37
PRADchr175023726Missense_Mutationrs768222656R963C0.28
PRADchr175023711Missense_Mutationrs200230098R958W0.56
READchr175023515Silentrs200822779P892P0.48
SARCchr175002780Missense_Mutationrs760757050V220I0.05
SARCchr175022395Missense_MutationnovelE772K0.17
SARCchr175004940Missense_MutationnovelE369Q0.14
SARCchr175004942Frame_Shift_InsnovelV370Sfs*100.14
SKCMchr175023579Missense_MutationNAP914S0.52
SKCMchr175024096Missense_Mutationrs139942468R1086Q0.1
SKCMchr175023633Missense_Mutationrs777872350P932S0.23
SKCMchr175002597Missense_Mutationrs777596594S188F0.4
SKCMchr175023854SilentNAP1005P0.5
SKCMchr175007500SilentnovelV483V0.31
SKCMchr175007501Missense_Mutationrs571606260R484W0.31
SKCMchr175023754Missense_MutationnovelP972L0.46
SKCMchr175020000SilentNAV557V0.75
SKCMchr175023855Missense_MutationnovelP1006S0.23
SKCMchr175023583Missense_MutationnovelS915W0.28
SKCMchr175022556SilentNAA825A0.6
SKCMchr175024089Missense_MutationNAP1084S0.43
SKCMchr175022580SilentnovelL833L0.45
SKCMchr175022581Missense_Mutationrs575669774R834W0.42
SKCMchr175023740Silentrs762359132A967A0.78
SKCMchr175023522Missense_MutationnovelG895R0.21
SKCMchr175023651Missense_MutationNAR938C0.91
SKCMchr175003868Missense_MutationNAN272K0.06
SKCMchr1750241963'UTRnovel0.34
SKCMchr175020638Missense_MutationNAE633K0.67
SKCMchr175024096Missense_Mutationrs139942468R1086Q0.41
SKCMchr175023965SilentnovelG1042G0.39
SKCMchr175023966Missense_MutationnovelA1043T0.4
SKCMchr175023550Missense_MutationNAP904L0.41
SKCMchr175002521Missense_Mutationrs780907252R163W0.09
SKCMchr175004027SilentNAI298I0.32
SKCMchr175004028Missense_MutationNAP299S0.17
SKCMchr175023902SilentnovelP1021P0.32
SKCMchr175024130Missense_MutationNAK1097N0.23
SKCMchr175023583Missense_Mutationrs549971892S915L0.24
STADchr175023552Missense_MutationnovelS905G0.23
STADchr175007071Missense_MutationNAM441T0.27
STADchr175002521Missense_Mutationrs780907252R163W0.37
STADchr175023928Missense_Mutationrs139120839R1030H0.36
STADchr175022544SilentnovelS821S0.38
STADchr175002808Missense_MutationNAC229F0.4
STADchr175002600Missense_MutationNAY189C0.1
STADchr175004949Missense_Mutationrs201287076R372W0.3
STADchr175020574Frame_Shift_DelNAP613Hfs*270.15
STADchr175022405Missense_MutationnovelA775V0.36
STADchr175022199SilentNAT706T0.21
STADchr175004880Missense_Mutationrs187228739R349C0.32
STADchr175023852Frame_Shift_DelnovelP1006Lfs*820.39
STADchr175002499SilentNAR155R0.21
STADchr175023717Missense_Mutationrs757104315G960R0.24
STADchr175023971SilentNAG1044G0.21
STADchr175020574Frame_Shift_DelNAP613Hfs*270.69
STADchr175013724Silentrs376123205G521G0.21
STADchr175002823Missense_Mutationrs201655443T234M0.47
THCAchr1750243323'UTRnovel0.29
UCECchr175024002Missense_MutationNAP1055S0.26
UCECchr175002631SilentnovelG199G0.2
UCECchr175002792Missense_Mutationrs776580434V224I0.39
UCECchr175002544SilentNAE170E0.35
UCECchr175002824Silentrs150944204T234T0.39
UCECchr175023486Nonsense_MutationNAE883*0.23
UCECchr175004866Missense_Mutationrs539953623R344H0.44
UCECchr175020521Missense_Mutationrs745324466V594I0.26
UCECchr175014777Missense_Mutationrs759883791G536R0.24
UCECchr175003682Missense_Mutationrs774939825R264H0.38
UCECchr175022407Missense_Mutationrs117621046A776T0.44
UCECchr175020625Missense_MutationNAQ628H0.12
UCECchr175023967Missense_Mutationrs373541138A1043V0.15
UCECchr175002499SilentNAR155R0.44
UCECchr175020653Missense_MutationnovelD638N0.09
UCECchr175020875SilentnovelR669R0.23
UCECchr175022592Silentrs746348476I837I0.45
UCECchr175020057SilentnovelT576T0.31
UCECchr175023713SilentnovelR958R0.42
UCECchr1750243343'UTRnovel0.42
UCECchr175022455Missense_MutationnovelP792S0.53
UCECchr175023909Nonsense_Mutationrs372792586R1024*0.37
UCECchr175024004Frame_Shift_InsnovelH1058Afs*380.5
UCECchr175002549Missense_MutationNAP172L0.43
UCECchr175002793Missense_MutationnovelV224A0.41
UCECchr175001304Missense_MutationnovelY89C0.27
UCECchr175003632SilentnovelV247V0.44
UCECchr175007282Missense_MutationnovelA452V0.26
UCECchr175022333Missense_MutationnovelA751V0.5
UCECchr175022130SilentNAR683R0.33
UCECchr175004011Missense_Mutationrs774589252R293Q0.33
UCECchr175001326SilentnovelY96Y0.1
UCECchr175007076Missense_MutationnovelR443G0.26
UCECchr175023576Frame_Shift_DelnovelS915Rfs*1730.55
UCECchr175022581SilentnovelR834R0.34
UCECchr1750244563'UTRnovel0.16
UCECchr175001343Missense_MutationnovelG102E0.23
UCECchr175023681Missense_Mutationrs764527829R948W0.21
UCECchr175022190Silentrs372267137T703T0.3
UCECchr175002492Missense_Mutationrs528902778R153Q0.37
UCECchr175007030Missense_MutationnovelF427L0.42
UCECchr175022576Missense_MutationnovelD832G0.41
UCECchr175000299Missense_Mutationrs756916879R18H0.05
UCECchr175020832Missense_MutationnovelR655Q0.38
UCECchr175007045SilentnovelE432E0.15
UCECchr175000298Missense_Mutationrs199632760R18C0.22
UCECchr175022384Missense_Mutationrs552440254R768Q0.4
UCECchr175023743SilentNAR968R0.5
UCECchr175024053Missense_Mutationrs748194713R1072W0.12
UCECchr1750242083'UTRnovel0.16
UCECchr175022198Missense_MutationnovelT706I0.34
UCECchr175007476SilentnovelL475L0.29
UCECchr175022432Missense_Mutationrs774940396R784H0.38
UCECchr175002124Missense_MutationNAE143D0.37
UCECchr175002806SilentnovelR228R0.3
UCECchr175013677Missense_MutationnovelE506K0.2
UCECchr175023902SilentnovelP1021P0.23
UCECchr175024110Missense_Mutationrs755305909R1091C0.17
UCECchr175002564Missense_MutationnovelY177F0.42
UCECchr175023813Missense_MutationnovelP992S0.33
UCECchr175013725Missense_MutationnovelV522I0.4
UCECchr175022333Missense_MutationnovelA751V0.41
UCECchr175014822Nonsense_MutationnovelQ551*0.13
UCECchr175020554SilentnovelL605L0.46
UCECchr1750246753'UTRnovel0.28

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCDEL0.20830.18166
LAMLDEL0.07330.12511
LIHCDEL0.54863.9592e-10
THCADEL0.0160.221

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

MESO0.029

Kaplan-Meier Survival Analysis

UCS0.034

Kaplan-Meier Survival Analysis

SKCM0.0001

Kaplan-Meier Survival Analysis

LUSC0.01

Kaplan-Meier Survival Analysis

KIRP0.0001

Kaplan-Meier Survival Analysis

BLCA0.01

Kaplan-Meier Survival Analysis

LAML0.029

Kaplan-Meier Survival Analysis

KICH0.031

Kaplan-Meier Survival Analysis

UCEC0.029

Kaplan-Meier Survival Analysis

DLBC0.016

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000129250 (Gene tree)
Gene ID
10749
Gene Symbol
KIF1C
Alias
SPAX2|SPG58|SAX2
Full Name
kinesin family member 1C
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
30,454 bases
Position
chr17:4,997,948-5,028,401
Accession
6317
RBP type
non-canonical RBP
Summary
The protein encoded by this gene is a member of the kinesin-like protein family. The family members are microtubule-dependent molecular motors that transport organelles within cells and move chromosomes during cell division. Mutations in this gene are a cause of spastic ataxia 2, autosomal recessive. [provided by RefSeq, May 2014]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000573815KIF1C-203726--- (aa)--
ENST00000320785KIF1C-2017919XM_005256424ENSP000003208211103 (aa)XP_005256481O43896
ENST00000572959KIF1C-202590--- (aa)--
ENST00000574165KIF1C-204799-ENSP00000458697138 (aa)-I3L1B1
Gene Model
Click here to download ENSG00000129250's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000129250Sleep6E-623251661
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000129250rs11658587174998687AObesity-related traits23251661[NR] min/d increase0.03EFO_0004870
ENSG00000129250rs238282175018833?Adolescent idiopathic scoliosis30019117EFO_0005423
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000129250's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000129250KIF1C10097.826ENSMUSG00000020821Kif1c10093.019Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003774motor activity9685376.TASFunction
GO:0003777microtubule motor activity21873635.IBAFunction
GO:0005515protein binding20360680.24482476.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005783endoplasmic reticulum9685376.TASComponent
GO:0005794Golgi apparatus-IEAComponent
GO:0005871kinesin complex21873635.IBAComponent
GO:0005874microtubule21873635.IBAComponent
GO:0006890retrograde vesicle-mediated transport, Golgi to ER-IEAProcess
GO:0007018microtubule-based movement21873635.IBAProcess
GO:0008017microtubule binding21873635.IBAFunction
GO:0008574ATP-dependent microtubule motor activity, plus-end-directed21873635.IBAFunction
GO:0016192vesicle-mediated transport21873635.IBAProcess
GO:0016887ATPase activity21873635.IBAFunction
GO:0030424axon21873635.IBAComponent
GO:0030425dendrite21873635.IBAComponent
GO:0030705cytoskeleton-dependent intracellular transport21873635.IBAProcess
GO:0043005neuron projection21873635.IBAComponent
GO:1904115axon cytoplasm-IEAComponent
GO:1990048anterograde neuronal dense core vesicle transport-ISSProcess
GO:1990049retrograde neuronal dense core vesicle transport-ISSProcess
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