EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
16631123Expression analysis and prognostic significance of the SRA1 gene, in ovarian cancer.Biochem Biophys Res Commun2006 Jun 2Leoutsakou T-
15493872SR-A1, a member of the human pre-mRNA splicing factor family, and its expression in colon cancer progression.Biol Chem2004 SepMathioudaki K-
29787824Discovery and expression analysis of novel transcripts of the human SR-related CTD-associated factor 1 (SCAF1) gene in human cancer cells using Next-Generation Sequencing.Gene2018 Sep 5Adamopoulos PGdoi: 10.1016/j.gene.2018.05.044

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1949654417Missense_Mutationrs779360567Q1129E0.2
ACCchr1949653577Missense_MutationnovelS1063C0.17
BLCAchr1949651476Missense_Mutationrs770076860R363W0.43
BLCAchr1949652698Missense_MutationNAR770Q0.44
BLCAchr1949651467Missense_MutationnovelE360K0.65
BLCAchr1949652410Missense_MutationNAS674W0.3
BLCAchr1949645063Missense_MutationnovelE13K0.08
BLCAchr1949652520Missense_MutationNAD711N0.59
BRCAchr1949653431Frame_Shift_DelnovelA1015Lfs*921
BRCAchr1949654735SilentnovelP1161P0.49
BRCAchr1949657880Silentrs754907754A1246A0.58
BRCAchr1949645401SilentNAP52P0.14
BRCAchr19496586193'UTRnovel0.15
BRCAchr1949652709Missense_MutationNAD774Y0.16
BRCAchr1949652803Nonsense_MutationNAS805*0.33
CESCchr1949645110Silentrs752202548T28T0.43
CESCchr1949651286SilentNAE299E0.28
CESCchr1949652721Missense_Mutationrs751197713R778W0.1
CESCchr1949652340Missense_MutationnovelG651S0.36
CESCchr1949652671Missense_Mutationrs772383494S761C0.25
CESCchr1949645362Missense_MutationnovelI39M0.18
CESCchr1949651284Missense_MutationnovelE299Q0.19
CHOLchr1949652728In_Frame_DelnovelD785_R790del0.08
COADchr1949658262Missense_MutationnovelR1268W0.25
COADchr1949650881Silentrs769175493S164S0.1
COADchr1949645115Missense_MutationnovelS30Y0.28
COADchr1949651154Silentrs746197159G255G0.43
COADchr1949652813Silentrs771383795P808P0.34
COADchr1949652955Missense_MutationnovelS856T0.34
COADchr1949646613Missense_MutationnovelL117M0.21
COADchr1949658305Missense_Mutationrs760624103R1282H0.37
COADchr1949654785Frame_Shift_DelNAT1181Pfs*280.26
COADchr1949645110Silentrs752202548T28T0.34
COADchr1949658318Frame_Shift_DelnovelP1288Qfs*570.5
COADchr1949654785Frame_Shift_DelNAT1181Pfs*280.38
COADchr1949654731Missense_MutationNAG1160V0.43
COADchr1949654785Frame_Shift_DelNAT1181Pfs*280.13
COADchr1949653320Silentrs575769784P977P0.55
COADchr1949654785Frame_Shift_DelNAT1181Pfs*280.5
COADchr1949653098Missense_MutationnovelK903N0.14
COADchr1949657767Missense_MutationnovelK1209E0.31
COADchr1949654785Frame_Shift_DelNAT1181Pfs*280.32
COADchr1949654785Frame_Shift_DelNAT1181Pfs*280.46
COADchr1949651059Nonsense_MutationnovelR224*0.25
COADchr1949654785Frame_Shift_DelNAT1181Pfs*280.57
COADchr1949654727Missense_MutationNAP1159T0.28
COADchr1949654785Frame_Shift_DelNAT1181Pfs*280.37
COADchr1949653548Silentrs375665533A1053A0.41
COADchr1949645110Silentrs752202548T28T0.17
ESCAchr1949654785Frame_Shift_DelNAT1181Pfs*280.78
ESCAchr1949650871Missense_MutationnovelS161C0.56
ESCAchr19496584833'UTRnovel0.61
ESCAchr1949654700Missense_MutationnovelP1150A0.11
ESCAchr1949645083Silentrs200923973G19G0.35
GBMchr1949646192Missense_MutationnovelD84G0.23
GBMchr1949652867SilentnovelC826C0.51
GBMchr1949658259Frame_Shift_InsnovelV1267Afs*790.29
GBMchr1949658261In_Frame_InsnovelV1267_R1268insVLTLCF0.27
HNSCchr1949651358Silentrs372506690D323D0.5
HNSCchr1949654690Missense_MutationnovelM1146I0.09
HNSCchr1949654389Silentrs767686210A1119A0.25
HNSCchr1949646810Missense_MutationnovelA153V0.5
HNSCchr1949654855Frame_Shift_InsnovelD1203Gfs*40.26
KIRPchr1949657789Missense_MutationnovelR1216L0.25
KIRPchr1949652265Missense_MutationnovelR626W0.51
KIRPchr1949652872Missense_MutationnovelS828Y0.35
KIRPchr1949658295Missense_MutationNAK1279Q0.5
LGGchr1949653443SilentNAR1018R0.97
LGGchr1949652487Missense_Mutationrs771601240A700T0.48
LGGchr1949651340Silentrs370259405D317D0.16
LIHCchr1949653621Missense_MutationnovelV1078F0.49
LIHCchr1949650924Missense_MutationNAT179P0.32
LIHCchr1949652751Missense_MutationnovelR788W0.23
LUADchr1949645134Splice_RegionnovelL36L0.34
LUADchr1949645041SilentnovelD5D0.19
LUADchr1949651513Missense_MutationnovelG375V0.2
LUADchr1949646780Missense_MutationnovelP143H0.32
LUADchr1949654714SilentnovelS1154S0.09
LUADchr1949650899SilentnovelT170T0.58
LUADchr1949645412Splice_SiteNAX56_splice0.49
LUADchr1949646559Missense_MutationnovelG99W0.18
LUADchr1949646117Missense_Mutationrs146838422R59Q0.16
LUADchr1949654785Frame_Shift_DelNAT1181Pfs*280.83
LUADchr1949650926SilentnovelT179T0.18
LUADchr1949658300Silentrs575013180H1280H0.39
LUSCchr1949654703Missense_MutationnovelV1151L0.75
LUSCchr1949653656SilentnovelP1089P0.45
LUSCchr1949652445Missense_MutationnovelV686L0.33
LUSCchr1949651999Missense_MutationNAS537L0.75
OVchr19496584583'UTRnovel0.43
OVchr1949651077Missense_MutationNAP230A0.44
OVchr1949650968SilentnovelA193A0.15
OVchr1949651081Missense_MutationnovelF231C0.29
OVchr1949650930Missense_MutationnovelD181H0.68
OVchr1949651077Missense_MutationNAP230A0.84
OVchr19496450265'UTRnovel0.29
OVchr1949650909Missense_MutationnovelH174D0.75
OVchr1949652709Missense_MutationNAD774Y0.35
OVchr1949651075Missense_MutationNAD229G0.87
OVchr1949651074Missense_MutationnovelD229N0.61
PAADchr1949651375Missense_Mutationrs754690731P329L0.24
PAADchr1949651053Missense_MutationnovelA222T0.08
PAADchr1949657799Silentrs777006031E1219E0.15
PCPGchr1949653512Nonsense_MutationnovelP1042*0.31
PRADchr1949652845Missense_MutationnovelS819F0.53
PRADchr1949651393Missense_Mutationrs749233252T335M0.23
PRADchr1949651394SilentnovelT335T0.31
READchr1949652529Missense_Mutationrs756716435D714N0.38
READchr1949645363Missense_MutationnovelQ40K0.08
READchr1949650955Frame_Shift_DelnovelS191Pfs*1200.13
READchr1949652749Missense_MutationnovelD787G0.32
SARCchr1949646750Missense_Mutationrs759490334R133Q0.14
SARCchr1949654785Frame_Shift_DelNAT1181Pfs*280.52
SKCMchr1949658328Missense_MutationnovelP1290S0.41
SKCMchr1949654737Missense_MutationNAS1162F0.39
SKCMchr1949654797Missense_MutationNAP1182L0.58
SKCMchr1949652681SilentnovelR764R0.42
SKCMchr1949651275Missense_MutationNAR296C0.37
SKCMchr1949651386Missense_MutationNAP333S0.52
SKCMchr1949652438SilentnovelR683R0.35
SKCMchr1949658320Missense_MutationnovelP1287L0.29
SKCMchr1949658321SilentnovelP1287P0.25
SKCMchr1949658329Missense_MutationNAP1290L0.75
SKCMchr1949654852SilentNAG1200G0.62
SKCMchr1949653011SilentNAS874S0.6
SKCMchr1949645048Nonsense_MutationNAR8*0.29
SKCMchr1949646131Nonsense_MutationNAR64*0.58
SKCMchr1949654725Missense_MutationNAP1158L0.34
SKCMchr1949646768Missense_MutationnovelP139L0.67
SKCMchr1949646769Silentrs764431608P139P0.63
SKCMchr1949652876SilentNAR829R0.4
SKCMchr1949651448SilentNAF353F0.33
SKCMchr1949646583Missense_Mutationrs267605589P107S0.41
SKCMchr1949654796Missense_MutationNAP1182S0.14
SKCMchr1949646772Silentrs754146923I140I0.74
SKCMchr1949654661Missense_MutationnovelH1137Y0.23
SKCMchr1949652677Missense_MutationnovelS763F0.6
SKCMchr1949652783SilentnovelP798P0.5
SKCMchr1949646529SilentnovelL89L0.59
SKCMchr1949652640Missense_Mutationrs779551629R751W0.38
SKCMchr1949653006Missense_MutationNAR873C0.14
SKCMchr1949652688Missense_MutationNAG767R0.78
SKCMchr1949653177Missense_MutationNAG930R0.62
SKCMchr1949652848Missense_MutationNAS820L0.17
SKCMchr1949653017SilentnovelF876F0.35
SKCMchr1949645123Missense_MutationNAA33S0.13
SKCMchr1949651156Missense_MutationnovelS256F0.43
STADchr1949652932Missense_MutationNAT848S0.2
STADchr1949654785Frame_Shift_DelnovelP1180Hfs*100.4
STADchr1949652381SilentNAA664A0.42
STADchr1949652497Missense_MutationNAR703Q0.41
STADchr1949645109Missense_Mutationrs767108871T28M0.21
STADchr1949654785Frame_Shift_DelNAT1181Pfs*280.2
STADchr1949654785Frame_Shift_DelNAT1181Pfs*280.35
STADchr1949654785Frame_Shift_DelNAT1181Pfs*280.33
STADchr1949653364Missense_MutationNAS992L0.71
STADchr1949654785Frame_Shift_DelNAT1181Pfs*280.5
STADchr1949654774Silentrs61741246G1174G0.43
STADchr1949651149Missense_MutationNAT254A0.07
STADchr1949653006Missense_MutationNAR873C0.35
STADchr1949654785Frame_Shift_DelNAT1181Pfs*280.35
STADchr1949653443SilentNAR1018R0.32
STADchr1949658265Missense_MutationnovelA1269T0.2
STADchr1949658278Missense_MutationNAR1273H0.59
STADchr1949652433Missense_MutationNAR682C0.26
STADchr1949646146Missense_MutationNAR69W0.32
STADchr1949658318Frame_Shift_DelnovelP1288Qfs*570.18
STADchr1949646606SilentNAR114R0.22
STADchr1949654785Frame_Shift_DelNAT1181Pfs*280.28
STADchr1949654375Missense_MutationnovelE1115Q0.18
STADchr1949652436Frame_Shift_InsnovelA685Gfs*270.4
STADchr1949654785Frame_Shift_DelNAT1181Pfs*280.61
STADchr1949652437Frame_Shift_DelNAA685Pfs*530.39
STADchr1949653451Missense_MutationNAA1021V0.3
STADchr1949654785Frame_Shift_DelnovelP1180Hfs*100.37
STADchr1949651359Missense_MutationNAA324T0.23
STADchr1949654785Frame_Shift_DelNAT1181Pfs*280.67
TGCTchr1949645412Splice_SiteNAX56_splice0.19
TGCTchr1949646567SilentnovelV101V0.24
THCAchr1949651072Missense_MutationNAY228C0.34
THCAchr1949651366Frame_Shift_InsnovelT327Hfs*190.07
UCECchr1949652791Missense_Mutationrs375947171S801L0.22
UCECchr1949650881Silentrs769175493S164S0.46
UCECchr1949651064Silentrs763988897F225F0.21
UCECchr1949652722Missense_Mutationrs780683585R778Q0.65
UCECchr1949651429Missense_MutationnovelA347V0.38
UCECchr1949652644Missense_MutationnovelR752H0.21
UCECchr1949653527Silentrs762617715T1046T0.48
UCECchr1949645110Silentrs752202548T28T0.5
UCECchr1949651276Missense_MutationnovelR296H0.3
UCECchr1949651359Missense_MutationNAA324T0.52
UCECchr1949646816Missense_MutationNAR155K0.17
UCECchr1949653207Missense_MutationNAV940M0.28
UCECchr1949654785Frame_Shift_DelNAT1181Pfs*280.44
UCECchr1949651241Missense_Mutationrs760729742E284D0.4
UCECchr1949651111Missense_MutationnovelP241L0.11
UCECchr1949652573SilentnovelR728R0.3
UCECchr1949658305Missense_Mutationrs760624103R1282H0.6
UCECchr1949645109Missense_Mutationrs767108871T28M0.26
UCECchr1949652986Missense_MutationnovelF866S0.27
UCECchr1949652991Missense_MutationnovelR868C0.42
UCECchr1949645110Silentrs752202548T28T0.44
UCECchr1949653441Nonsense_MutationNAR1018*0.53
UCECchr1949658215Missense_MutationnovelH1252R0.3
UCECchr1949654785Frame_Shift_DelNAT1181Pfs*280.37
UCECchr1949652554Missense_MutationNAP722L0.29
UCECchr1949657870Missense_MutationnovelL1243P0.13
UCECchr1949652478Missense_MutationnovelD697N0.28
UCECchr1949652903SilentnovelA838A0.38
UCECchr1949651349SilentnovelP320P0.43
UCECchr1949652772Missense_MutationnovelA795T0.24
UCECchr1949657881Missense_MutationnovelV1247I0.48
UCECchr1949653571Missense_Mutationrs768633107A1061V0.27
UCECchr1949654663SilentnovelH1137H0.3
UCECchr1949654697Missense_MutationnovelA1149T0.47
UCECchr1949652679Missense_Mutationrs764284987R764W0.36
UCECchr1949657797Missense_MutationNAE1219K0.09
UCECchr1949654713Missense_MutationnovelS1154Y0.32
UCECchr1949646145SilentnovelC68C0.45
UCECchr1949654785Frame_Shift_DelnovelP1180Hfs*100.4
UCECchr1949652954SilentnovelA855A0.35
UCECchr1949652775Silentrs753735532R796R0.34
UCSchr1949651358Silentrs372506690D323D0.6
UCSchr1949652486SilentnovelF699F0.27

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CESCDEL0.08810.027508
KIRPDEL0.04860.054726
LUADDEL0.25391.5526e-05
LUSCDEL0.21161.1877e-06
PAADDEL0.08150.035089
READDEL0.09090.23023
TGCTDEL0.28670.0046229
UCSDEL0.17860.12448

Survival Analysis
CancerP-value Q-value
KIRC0.0048

Kaplan-Meier Survival Analysis

MESO0.00043

Kaplan-Meier Survival Analysis

ACC0.00027

Kaplan-Meier Survival Analysis

SKCM0.00074

Kaplan-Meier Survival Analysis

PRAD0.0056

Kaplan-Meier Survival Analysis

KIRP0.025

Kaplan-Meier Survival Analysis

COAD0.0038

Kaplan-Meier Survival Analysis

PAAD0.015

Kaplan-Meier Survival Analysis

BLCA0.041

Kaplan-Meier Survival Analysis

LAML0.013

Kaplan-Meier Survival Analysis

LIHC0.0071

Kaplan-Meier Survival Analysis

LGG0.017

Kaplan-Meier Survival Analysis

LUAD0.011

Kaplan-Meier Survival Analysis

UVM0.039

Kaplan-Meier Survival Analysis

OV0.043

Kaplan-Meier Survival Analysis

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000126461 (Gene tree)
Gene ID
58506
Gene Symbol
SCAF1
Alias
SR-A1|FLJ00034
Full Name
SR-related CTD associated factor 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
18,147 bases
Position
chr19:49,640,503-49,658,649
Accession
30403
RBP type
non-canonical RBP
Summary
(SR-Related CTD Associated Factor 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include RNA binding and protein domain specific binding. An important paralog of this gene is PHRF1.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000595242SCAF1-202463-ENSP00000472276119 (aa)-M0R232
ENST00000598359SCAF1-203662-ENSP00000473210203 (aa)-M0R3G4
ENST00000360565SCAF1-2014306XM_005259122ENSP000003537691312 (aa)XP_005259179Q9H7N4
ENST00000601038SCAF1-204491-ENSP0000047264998 (aa)-M0R2L3
Gene Model
Click here to download ENSG00000126461's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000126461rs75081481949648885?Schizophrenia29483656[1.06-1.1]1.08EFO_0000692
ENSG00000126461rs1893490941949642643?Systolic blood pressure30595370EFO_0006335
ENSG00000126461rs763875131949658008?Mean corpuscular hemoglobin30595370EFO_0004527
ENSG00000126461rs617431991949657834?Heel bone mineral density30595370EFO_0009270
ENSG00000126461rs1893490941949642643?Cardiovascular disease30595370EFO_0000319
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000126461's network
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000126461SCAF110090.909ENSMUSG00000038406Scaf110097.674Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus-IEAComponent
GO:0006366transcription by RNA polymerase II-IEAProcess
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0019904protein domain specific binding-IEAFunction
GO:0099122RNA polymerase II C-terminal domain binding15992770.IPIFunction
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