EuRBPDB

Note: to get the extension of tumor abbreviations.

Cancer Related Information
Basic Information

Differential Expression

Expression in 33 cancers

Mutations

Cancer	Chr	Position	Mutation Type	dbSNP	Protein-change	Allele Freq	RBD
BLCA	chr20	2463160	Missense_Mutation	novel	G163V	0.09
BLCA	chr20	2462701	Missense_Mutation	NA	P207R	0.22
BLCA	chr20	2461784	Missense_Mutation	NA	P232L	0.38
BLCA	chr20	2462659	Missense_Mutation	rs767441589	R221Q	0.18
BLCA	chr20	2465778	Missense_Mutation	NA	V66G	0.25	LSM
BLCA	chr20	2463848	Missense_Mutation	novel	G107R	0.2
BLCA	chr20	2463849	Silent	rs112240907	I106I	0.41
BLCA	chr20	2465739	Nonsense_Mutation	novel	S79*	0.17	LSM
BLCA	chr20	2470807	5'UTR	novel		0.71
BRCA	chr20	2462577	Intron	novel		0.2
BRCA	chr20	2470697	5'UTR	rs747193234		0.2
BRCA	chr20	2461875	Intron	novel		0.1
BRCA	chr20	2470689	Frame_Shift_Ins	novel	M1?	0.3
BRCA	chr20	2463874	Missense_Mutation	novel	A98V	0.1
BRCA	chr20	2463016	Intron	NA		0.17
CESC	chr20	2470741	5'UTR	rs778146640		0.18
CESC	chr20	2470729	5'UTR	novel		0.06
CESC	chr20	2461899	Intron	rs751364901		0.33
CESC	chr20	2461882	Intron	rs201957068		0.47
COAD	chr20	2463030	Intron	NA		0.28
COAD	chr20	2467627	Silent	NA	C45C	0.14
COAD	chr20	2461915	Intron	novel		0.1
COAD	chr20	2461708	3'UTR	novel		0.36
COAD	chr20	2462758	Missense_Mutation	NA	M188T	0.28
COAD	chr20	2467642	Missense_Mutation	NA	L40F	0.77	LSM
ESCA	chr20	2462432	Intron	novel		0.5
GBM	chr20	2463133	Missense_Mutation	rs376998028	R172H	0.51
HNSC	chr20	2463158	Missense_Mutation	novel	A164S	0.28
HNSC	chr20	2470780	5'UTR	novel		0.28
KICH	chr20	2461772	Missense_Mutation	rs778892584	R236H	0.3
KIRC	chr20	2467753	Silent	novel	V3V	0.37
KIRC	chr20	2461772	Missense_Mutation	rs778892584	R236H	0.3
LIHC	chr20	2462649	Silent	NA	P224P	0.11
LUAD	chr20	2467727	Missense_Mutation	NA	H12R	0.46	LSM
LUAD	chr20	2465753	Silent	NA	G74G	0.07
LUAD	chr20	2461781	Missense_Mutation	rs558249175	P233L	0.09
LUSC	chr20	2463780	Silent	novel	G129G	0.24
LUSC	chr20	2461740	3'UTR	novel		0.33
LUSC	chr20	2465728	Nonsense_Mutation	novel	E83*	0.15
LUSC	chr20	2463772	Missense_Mutation	NA	R132L	0.37
LUSC	chr20	2461788	Missense_Mutation	novel	P231A	0.14
LUSC	chr20	2461657	3'UTR	novel		0.45
LUSC	chr20	2465726	Missense_Mutation	NA	E83D	0.3
OV	chr20	2462223	Intron	rs369189820		0.3
OV	chr20	2467744	Silent	rs745345351	S6S	0.25
PRAD	chr20	2461830	Intron	rs552810222		0.18
PRAD	chr20	2461891	Intron	rs777169402		0.39
PRAD	chr20	2462573	Intron	novel		0.1
READ	chr20	2465758	Nonsense_Mutation	NA	R73*	0.15	LSM
READ	chr20	2470730	5'UTR	novel		0.44
READ	chr20	2467668	Missense_Mutation	NA	K32E	0.43	LSM
SARC	chr20	2461930	Intron	novel		0.19
SKCM	chr20	2463881	Missense_Mutation	novel	P96S	0.49
SKCM	chr20	2463810	Silent	rs775215815	P119P	0.38
SKCM	chr20	2461785	Missense_Mutation	NA	P232T	0.28
SKCM	chr20	2463219	Silent	NA	T143T	0.25
SKCM	chr20	2470791	5'UTR	novel		0.29
SKCM	chr20	2462746	Missense_Mutation	novel	P192L	0.49
SKCM	chr20	2463121	Missense_Mutation	rs752259594	P176L	0.27
SKCM	chr20	2462649	Silent	rs761783476	P224P	0.63
SKCM	chr20	2465752	Missense_Mutation	NA	E75K	0.47	LSM
SKCM	chr20	2463120	Silent	NA	P176P	0.08
SKCM	chr20	2462648	Missense_Mutation	NA	P225S	0.45
SKCM	chr20	2461782	Missense_Mutation	rs777647417	P233S	0.17
SKCM	chr20	2463819	Silent	rs200248925	A116A	0.44
SKCM	chr20	2463839	Missense_Mutation	NA	A110P	0.37
SKCM	chr20	2461927	Intron	novel		0.42
SKCM	chr20	2462720	Missense_Mutation	NA	P201S	0.36
STAD	chr20	2465774	Silent	rs749104286	L67L	0.16
STAD	chr20	2463094	Frame_Shift_Del	novel	*P185Lfs4**	0.28
STAD	chr20	2461718	3'UTR	rs776229760		0.27
STAD	chr20	2461772	Missense_Mutation	rs778892584	R236H	0.21
UCEC	chr20	2462545	Intron	novel		0.34
UCEC	chr20	2465813	Missense_Mutation	novel	K54N	0.2	LSM
UCEC	chr20	2462407	Intron	novel		0.41
UCEC	chr20	2461857	Intron	novel		0.24
UCEC	chr20	2465786	Silent	NA	E63E	0.4
UCEC	chr20	2462638	Missense_Mutation	rs759671047	R228Q	0.39
UCEC	chr20	2467612	Missense_Mutation	novel	K50N	0.29	LSM
UCEC	chr20	2461834	Intron	NA		0.41
UCEC	chr20	2461699	3'UTR	novel		0.17
UCEC	chr20	2463016	Intron	NA		0.26
UCEC	chr20	2462676	Missense_Mutation	rs542141818	M215I	0.18
UCEC	chr20	2463758	Missense_Mutation	NA	P137T	0.12
UCEC	chr20	2467688	Missense_Mutation	rs750433171	R25Q	0.23	LSM
UCEC	chr20	2467240	Intron	novel		0.28

Copy Number Variations (CNVs)

Cancer	Type	Freq	Q-value
ACC	DEL	0.1444	0.030954
LUAD	DEL	0.2016	0.15188
OV	AMP	0.4957	0.059168
TGCT	DEL	0.1867	0.14117

Survival Analysis

Cancer	P-value	Q-value
THYM	0.015	Kaplan-Meier Survival Analysis
KIRC	0.00018	Kaplan-Meier Survival Analysis
SARC	0.023	Kaplan-Meier Survival Analysis
MESO	0.00017	Kaplan-Meier Survival Analysis
ACC	0.013	Kaplan-Meier Survival Analysis
ESCA	0.0033	Kaplan-Meier Survival Analysis
KIRP	0.047	Kaplan-Meier Survival Analysis
LAML	0.013	Kaplan-Meier Survival Analysis
LIHC	0.0021	Kaplan-Meier Survival Analysis
DLBC	0.024	Kaplan-Meier Survival Analysis
LGG	0.00071	Kaplan-Meier Survival Analysis
CHOL	0.028	Kaplan-Meier Survival Analysis
LUAD	0.012	Kaplan-Meier Survival Analysis
UVM	0.00013	Kaplan-Meier Survival Analysis

Drugs

Cell lines and drugs in GSE70138 or GSE92742

Description

RBDs

RBPome

Literatures

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000125835 (Gene tree)
Gene ID: 6628
Gene Symbol: SNRPB
Alias: COD|SmB/SmB'|Sm-B/B'|snRNP-B|SNRPB1
Full Name: small nuclear ribonucleoprotein polypeptides B and B1
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Minus strand
Length: 9,220 bases
Position: chr20:2,461,634-2,470,853
Accession: 11153
RBP type: canonical RBP
Summary: The protein encoded by this gene is one of several nuclear proteins that are found in common among U1, U2, U4/U6, and U5 small ribonucleoprotein particles (snRNPs). These snRNPs are involved in pre-mRNA splicing, and the encoded protein may also play a role in pre-mRNA splicing or snRNP structure. Autoantibodies from patients with systemic lupus erythematosus frequently recognize epitopes on the encoded protein. Two transcript variants encoding different isoforms (B and B') have been found for this gene. [provided by RefSeq, Jul 2008]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000370746	LSM	PF01423.22	2.6e-19	1	1
ENSP00000412566	LSM	PF01423.22	2.8e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
22681889	The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts	4SURIC & HEK293	2012 May	Baltz AG	DOI: 10.1016/j.molcel.2012.05.021
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
27287018	Functional genomics analyses of RNA-binding proteins reveal the splicing regulator SNRPB as an oncogenic candidate in glioblastoma.	Genome Biol	2016 Jun 10	Correa BR	doi: 10.1186/s13059-016-0990-4.

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000381342	SNRPB-201	1154	-	ENSP00000370746	231 (aa)	-	P14678
ENST00000438552	SNRPB-202	1008	-	ENSP00000412566	240 (aa)	-	P14678
ENST00000474384	SNRPB-203	985	-	ENSP00000474579	70 (aa)	-	S4R3P3

Gene Model

Click here to download ENSG00000125835's gene model file

Pathways

Pathway ID	Pathway Name	Source
hsa03040	Spliceosome	KEGG
hsa05322	Systemic lupus erythematosus	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000125835's network

* RBP PPI network refers to all genes directly bind to RBP

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSG00000125835	SNRPB	96	92.760	ENSG00000128739	SNRPN	100	96.450

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000125835	SNRPB	74	98.077	ENSAPOG00000019606	snrpb	56	94.643	Acanthochromis_polyacanthus
ENSG00000125835	SNRPB	99	100.000	ENSAMEG00000011353	SNRPB	98	100.000	Ailuropoda_melanoleuca
ENSG00000125835	SNRPB	76	92.571	ENSACIG00000014480	snrpb	71	94.444	Amphilophus_citrinellus
ENSG00000125835	SNRPB	74	98.077	ENSAOCG00000006876	snrpb	69	94.643	Amphiprion_ocellaris
ENSG00000125835	SNRPB	63	93.182	ENSAPEG00000008846	-	88	77.586	Amphiprion_percula
ENSG00000125835	SNRPB	74	98.077	ENSAPEG00000021585	snrpb	71	94.643	Amphiprion_percula
ENSG00000125835	SNRPB	74	98.077	ENSATEG00000009836	snrpb	69	94.048	Anabas_testudineus
ENSG00000125835	SNRPB	92	95.305	ENSACAG00000002053	SNRPB	92	95.305	Anolis_carolinensis
ENSG00000125835	SNRPB	100	100.000	ENSANAG00000024443	-	100	100.000	Aotus_nancymaae
ENSG00000125835	SNRPB	99	93.043	ENSANAG00000036271	-	76	93.122	Aotus_nancymaae
ENSG00000125835	SNRPB	74	98.077	ENSACLG00000014707	snrpb	69	94.643	Astatotilapia_calliptera
ENSG00000125835	SNRPB	74	98.077	ENSAMXG00000029434	snrpb	70	94.048	Astyanax_mexicanus
ENSG00000125835	SNRPB	81	70.492	ENSBTAG00000024548	-	82	70.492	Bos_taurus
ENSG00000125835	SNRPB	100	99.567	ENSBTAG00000001038	SNRPB	100	99.567	Bos_taurus
ENSG00000125835	SNRPB	93	92.056	ENSCJAG00000023097	-	79	92.063	Callithrix_jacchus
ENSG00000125835	SNRPB	74	94.231	ENSCJAG00000041673	-	71	94.545	Callithrix_jacchus
ENSG00000125835	SNRPB	100	100.000	ENSCJAG00000020971	-	100	100.000	Callithrix_jacchus
ENSG00000125835	SNRPB	100	100.000	ENSCAFG00000006693	-	100	100.000	Canis_familiaris
ENSG00000125835	SNRPB	81	88.421	ENSCAFG00000031109	-	79	84.737	Canis_familiaris
ENSG00000125835	SNRPB	66	95.652	ENSCAFG00020013247	-	69	87.931	Canis_lupus_dingo
ENSG00000125835	SNRPB	100	100.000	ENSCAFG00020016981	-	100	100.000	Canis_lupus_dingo
ENSG00000125835	SNRPB	67	95.745	ENSCAFG00020020370	-	61	97.826	Canis_lupus_dingo
ENSG00000125835	SNRPB	51	94.444	ENSCAFG00020016234	-	75	90.909	Canis_lupus_dingo
ENSG00000125835	SNRPB	86	73.846	ENSCAFG00020003638	-	84	73.846	Canis_lupus_dingo
ENSG00000125835	SNRPB	100	99.567	ENSCHIG00000025449	-	100	99.567	Capra_hircus
ENSG00000125835	SNRPB	80	68.333	ENSCHIG00000024610	-	76	74.510	Capra_hircus
ENSG00000125835	SNRPB	100	100.000	ENSTSYG00000014498	-	100	100.000	Carlito_syrichta
ENSG00000125835	SNRPB	97	76.889	ENSTSYG00000032303	-	55	79.333	Carlito_syrichta
ENSG00000125835	SNRPB	99	100.000	ENSCAPG00000012669	SNRPB	100	100.000	Cavia_aperea
ENSG00000125835	SNRPB	100	100.000	ENSCPOG00000039408	SNRPB	100	100.000	Cavia_porcellus
ENSG00000125835	SNRPB	73	86.275	ENSCCAG00000035140	-	89	86.275	Cebus_capucinus
ENSG00000125835	SNRPB	100	100.000	ENSCCAG00000026002	SNRPB	100	100.000	Cebus_capucinus
ENSG00000125835	SNRPB	100	100.000	ENSCATG00000030230	SNRPB	100	100.000	Cercocebus_atys
ENSG00000125835	SNRPB	100	98.750	ENSCLAG00000012442	SNRPB	100	98.750	Chinchilla_lanigera
ENSG00000125835	SNRPB	100	100.000	ENSCSAG00000010840	SNRPB	100	100.000	Chlorocebus_sabaeus
ENSG00000125835	SNRPB	100	96.667	ENSCPBG00000026801	SNRPB	100	96.667	Chrysemys_picta_bellii
ENSG00000125835	SNRPB	100	100.000	ENSCANG00000019461	SNRPB	100	100.000	Colobus_angolensis_palliatus
ENSG00000125835	SNRPB	100	100.000	ENSCGRG00001023046	Snrpb	100	100.000	Cricetulus_griseus_chok1gshd
ENSG00000125835	SNRPB	96	100.000	ENSCGRG00000010423	Snrpb	98	100.000	Cricetulus_griseus_crigri
ENSG00000125835	SNRPB	74	100.000	ENSCSEG00000020328	snrpb	70	94.643	Cynoglossus_semilaevis
ENSG00000125835	SNRPB	74	100.000	ENSDARG00000011125	snrpb	69	94.643	Danio_rerio
ENSG00000125835	SNRPB	100	100.000	ENSDNOG00000015545	-	100	100.000	Dasypus_novemcinctus
ENSG00000125835	SNRPB	74	98.077	ENSDNOG00000007896	-	71	94.220	Dasypus_novemcinctus
ENSG00000125835	SNRPB	97	99.552	ENSDORG00000029558	Snrpb	100	99.565	Dipodomys_ordii
ENSG00000125835	SNRPB	76	71.698	FBgn0262601	SmB	74	70.470	Drosophila_melanogaster
ENSG00000125835	SNRPB	74	100.000	ENSETEG00000006830	SNRPB	74	77.381	Echinops_telfairi
ENSG00000125835	SNRPB	74	92.308	ENSEBUG00000007467	SNRPB	62	88.591	Eptatretus_burgeri
ENSG00000125835	SNRPB	100	99.567	ENSEASG00005012991	SNRPB	100	99.567	Equus_asinus_asinus
ENSG00000125835	SNRPB	100	100.000	ENSECAG00000011944	SNRPB	100	100.000	Equus_caballus
ENSG00000125835	SNRPB	98	100.000	ENSEEUG00000015568	SNRPB	82	98.276	Erinaceus_europaeus
ENSG00000125835	SNRPB	74	98.077	ENSELUG00000014564	snrpb	71	93.210	Esox_lucius
ENSG00000125835	SNRPB	74	73.077	ENSFCAG00000041049	-	64	73.077	Felis_catus
ENSG00000125835	SNRPB	100	100.000	ENSFCAG00000034090	-	100	100.000	Felis_catus
ENSG00000125835	SNRPB	97	96.121	ENSFALG00000004866	SNRPB	100	96.121	Ficedula_albicollis
ENSG00000125835	SNRPB	100	100.000	ENSFDAG00000009937	SNRPB	100	100.000	Fukomys_damarensis
ENSG00000125835	SNRPB	60	80.952	ENSFHEG00000006534	-	78	63.768	Fundulus_heteroclitus
ENSG00000125835	SNRPB	100	96.250	ENSGALG00000035421	SNRPN	100	96.250	Gallus_gallus
ENSG00000125835	SNRPB	71	98.000	ENSGAFG00000019558	snrpb	72	94.012	Gambusia_affinis
ENSG00000125835	SNRPB	74	98.077	ENSGACG00000003262	snrpb	70	94.643	Gasterosteus_aculeatus
ENSG00000125835	SNRPB	100	96.667	ENSGAGG00000001308	SNRPB	100	96.667	Gopherus_agassizii
ENSG00000125835	SNRPB	100	100.000	ENSGGOG00000016138	SNRPB	100	100.000	Gorilla_gorilla
ENSG00000125835	SNRPB	74	98.077	ENSHBUG00000008369	snrpb	69	94.643	Haplochromis_burtoni
ENSG00000125835	SNRPB	100	100.000	ENSHGLG00000016241	-	100	100.000	Heterocephalus_glaber_female
ENSG00000125835	SNRPB	74	92.308	ENSHGLG00000016505	-	72	90.000	Heterocephalus_glaber_female
ENSG00000125835	SNRPB	100	100.000	ENSHGLG00100012877	-	100	100.000	Heterocephalus_glaber_male
ENSG00000125835	SNRPB	74	92.308	ENSHGLG00100004178	-	72	90.000	Heterocephalus_glaber_male
ENSG00000125835	SNRPB	74	98.077	ENSHCOG00000014888	snrpb	70	94.643	Hippocampus_comes
ENSG00000125835	SNRPB	74	100.000	ENSIPUG00000024569	SNRPB	70	94.643	Ictalurus_punctatus
ENSG00000125835	SNRPB	100	98.333	ENSSTOG00000033664	-	100	98.333	Ictidomys_tridecemlineatus
ENSG00000125835	SNRPB	94	81.944	ENSSTOG00000027821	-	62	99.265	Ictidomys_tridecemlineatus
ENSG00000125835	SNRPB	100	100.000	ENSJJAG00000024170	Snrpb	100	100.000	Jaculus_jaculus
ENSG00000125835	SNRPB	74	100.000	ENSKMAG00000014494	snrpb	68	95.238	Kryptolebias_marmoratus
ENSG00000125835	SNRPB	74	98.077	ENSLBEG00000005678	snrpb	70	94.643	Labrus_bergylta
ENSG00000125835	SNRPB	96	93.213	ENSLACG00000011459	SNRPB	92	93.213	Latimeria_chalumnae
ENSG00000125835	SNRPB	74	100.000	ENSLOCG00000002687	snrpb	70	95.238	Lepisosteus_oculatus
ENSG00000125835	SNRPB	99	96.053	ENSLAFG00000017588	SNRPB	99	96.053	Loxodonta_africana
ENSG00000125835	SNRPB	100	100.000	ENSMFAG00000038756	SNRPB	100	100.000	Macaca_fascicularis
ENSG00000125835	SNRPB	100	100.000	ENSMMUG00000010050	SNRPB	100	100.000	Macaca_mulatta
ENSG00000125835	SNRPB	100	100.000	ENSMNEG00000027954	SNRPB	100	100.000	Macaca_nemestrina
ENSG00000125835	SNRPB	100	100.000	ENSMLEG00000022346	SNRPB	100	100.000	Mandrillus_leucophaeus
ENSG00000125835	SNRPB	73	98.039	ENSMAMG00000009294	snrpb	67	94.611	Mastacembelus_armatus
ENSG00000125835	SNRPB	74	98.077	ENSMZEG00005011856	snrpb	69	94.643	Maylandia_zebra
ENSG00000125835	SNRPB	90	85.714	ENSMAUG00000020656	-	65	100.000	Mesocricetus_auratus
ENSG00000125835	SNRPB	74	100.000	ENSMAUG00000006516	-	80	100.000	Mesocricetus_auratus
ENSG00000125835	SNRPB	97	85.333	ENSMICG00000015983	-	87	89.947	Microcebus_murinus
ENSG00000125835	SNRPB	100	99.567	ENSMICG00000016519	SNRPB	100	99.567	Microcebus_murinus
ENSG00000125835	SNRPB	74	92.308	ENSMOCG00000021362	-	72	73.410	Microtus_ochrogaster
ENSG00000125835	SNRPB	100	99.567	ENSMOCG00000002892	-	100	99.567	Microtus_ochrogaster
ENSG00000125835	SNRPB	79	92.857	ENSMMOG00000013226	snrpb	71	94.611	Mola_mola
ENSG00000125835	SNRPB	74	98.077	ENSMALG00000020839	snrpb	56	94.048	Monopterus_albus
ENSG00000125835	SNRPB	100	99.567	MGP_CAROLIEiJ_G0024293	Snrpb	100	99.567	Mus_caroli
ENSG00000125835	SNRPB	100	99.567	ENSMUSG00000027404	Snrpb	100	99.567	Mus_musculus
ENSG00000125835	SNRPB	100	99.567	MGP_PahariEiJ_G0025738	Snrpb	100	99.567	Mus_pahari
ENSG00000125835	SNRPB	100	99.567	MGP_SPRETEiJ_G0025213	Snrpb	100	99.567	Mus_spretus
ENSG00000125835	SNRPB	100	100.000	ENSMPUG00000009283	SNRPB	100	100.000	Mustela_putorius_furo
ENSG00000125835	SNRPB	100	96.667	ENSMLUG00000016951	SNRPB	100	96.667	Myotis_lucifugus
ENSG00000125835	SNRPB	100	100.000	ENSNGAG00000012051	Snrpb	100	100.000	Nannospalax_galili
ENSG00000125835	SNRPB	78	90.055	ENSNBRG00000006353	snrpb	62	93.293	Neolamprologus_brichardi
ENSG00000125835	SNRPB	100	100.000	ENSNLEG00000029067	SNRPB	100	100.000	Nomascus_leucogenys
ENSG00000125835	SNRPB	97	97.333	ENSMEUG00000015625	SNRPB	100	97.333	Notamacropus_eugenii
ENSG00000125835	SNRPB	100	95.417	ENSODEG00000016060	-	100	95.417	Octodon_degus
ENSG00000125835	SNRPB	100	100.000	ENSODEG00000004305	-	100	100.000	Octodon_degus
ENSG00000125835	SNRPB	74	98.077	ENSONIG00000000248	snrpb	69	94.643	Oreochromis_niloticus
ENSG00000125835	SNRPB	100	97.083	ENSOCUG00000028215	-	100	97.083	Oryctolagus_cuniculus
ENSG00000125835	SNRPB	93	94.884	ENSOCUG00000021456	-	78	95.767	Oryctolagus_cuniculus
ENSG00000125835	SNRPB	100	99.583	ENSOCUG00000014042	-	100	99.583	Oryctolagus_cuniculus
ENSG00000125835	SNRPB	77	93.296	ENSOCUG00000022423	-	86	96.429	Oryctolagus_cuniculus
ENSG00000125835	SNRPB	92	71.831	ENSOCUG00000026813	-	63	70.946	Oryctolagus_cuniculus
ENSG00000125835	SNRPB	74	98.077	ENSORLG00000021862	snrpb	69	94.643	Oryzias_latipes
ENSG00000125835	SNRPB	100	100.000	ENSOGAG00000016149	SNRPB	100	100.000	Otolemur_garnettii
ENSG00000125835	SNRPB	100	99.567	ENSOARG00000006740	SNRPB	100	99.567	Ovis_aries
ENSG00000125835	SNRPB	100	100.000	ENSPPAG00000036314	SNRPB	100	100.000	Pan_paniscus
ENSG00000125835	SNRPB	99	67.123	ENSPPRG00000024804	-	90	67.123	Panthera_pardus
ENSG00000125835	SNRPB	100	100.000	ENSPPRG00000003233	-	100	100.000	Panthera_pardus
ENSG00000125835	SNRPB	73	78.431	ENSPPRG00000018908	-	70	77.419	Panthera_pardus
ENSG00000125835	SNRPB	99	100.000	ENSPTIG00000007468	SNRPB	99	100.000	Panthera_tigris_altaica
ENSG00000125835	SNRPB	100	100.000	ENSPTRG00000013176	SNRPB	100	100.000	Pan_troglodytes
ENSG00000125835	SNRPB	100	100.000	ENSPANG00000020362	SNRPB	100	100.000	Papio_anubis
ENSG00000125835	SNRPB	74	100.000	ENSPKIG00000002865	snrpb	70	94.048	Paramormyrops_kingsleyae
ENSG00000125835	SNRPB	99	96.653	ENSPSIG00000014125	SNRPB	98	96.653	Pelodiscus_sinensis
ENSG00000125835	SNRPB	77	90.449	ENSPMGG00000016349	snrpb	69	92.025	Periophthalmus_magnuspinnatus
ENSG00000125835	SNRPB	100	100.000	ENSPEMG00000007948	Snrpb	100	100.000	Peromyscus_maniculatus_bairdii
ENSG00000125835	SNRPB	74	94.231	ENSPMAG00000004923	SNRPB	100	93.258	Petromyzon_marinus
ENSG00000125835	SNRPB	99	97.908	ENSPCIG00000004694	SNRPB	99	97.908	Phascolarctos_cinereus
ENSG00000125835	SNRPB	73	98.039	ENSPFOG00000011802	snrpb	63	95.973	Poecilia_formosa
ENSG00000125835	SNRPB	66	97.826	ENSPLAG00000014130	snrpb	59	95.556	Poecilia_latipinna
ENSG00000125835	SNRPB	66	97.826	ENSPREG00000015515	snrpb	62	95.556	Poecilia_reticulata
ENSG00000125835	SNRPB	100	100.000	ENSPPYG00000010841	SNRPB	100	100.000	Pongo_abelii
ENSG00000125835	SNRPB	100	100.000	ENSPCOG00000013686	SNRPB	100	100.000	Propithecus_coquereli
ENSG00000125835	SNRPB	98	98.678	ENSPVAG00000017013	SNRPB	80	98.678	Pteropus_vampyrus
ENSG00000125835	SNRPB	74	98.077	ENSPNYG00000014788	snrpb	69	94.643	Pundamilia_nyererei
ENSG00000125835	SNRPB	74	100.000	ENSPNAG00000016126	snrpb	70	94.643	Pygocentrus_nattereri
ENSG00000125835	SNRPB	100	100.000	ENSRNOG00000006961	Snrpb	100	100.000	Rattus_norvegicus
ENSG00000125835	SNRPB	100	99.583	ENSRBIG00000040505	SNRPB	100	99.583	Rhinopithecus_bieti
ENSG00000125835	SNRPB	100	100.000	ENSRROG00000036094	SNRPB	100	100.000	Rhinopithecus_roxellana
ENSG00000125835	SNRPB	100	100.000	ENSSBOG00000027310	SNRPB	100	100.000	Saimiri_boliviensis_boliviensis
ENSG00000125835	SNRPB	100	98.333	ENSSHAG00000010394	SNRPB	100	98.333	Sarcophilus_harrisii
ENSG00000125835	SNRPB	74	100.000	ENSSFOG00015002870	snrpb	70	93.452	Scleropages_formosus
ENSG00000125835	SNRPB	74	98.077	ENSSMAG00000006766	snrpb	70	94.048	Scophthalmus_maximus
ENSG00000125835	SNRPB	74	98.077	ENSSDUG00000018539	snrpb	69	94.643	Seriola_dumerili
ENSG00000125835	SNRPB	74	98.077	ENSSLDG00000022391	snrpb	69	94.643	Seriola_lalandi_dorsalis
ENSG00000125835	SNRPB	73	100.000	ENSSARG00000003084	SNRPB	74	84.884	Sorex_araneus
ENSG00000125835	SNRPB	99	96.653	ENSSPUG00000015659	SNRPB	100	96.653	Sphenodon_punctatus
ENSG00000125835	SNRPB	74	98.077	ENSSPAG00000021992	snrpb	69	94.643	Stegastes_partitus
ENSG00000125835	SNRPB	100	99.567	ENSSSCG00000040857	-	100	99.567	Sus_scrofa
ENSG00000125835	SNRPB	100	80.087	ENSSSCG00000011966	-	91	75.943	Sus_scrofa
ENSG00000125835	SNRPB	73	98.039	ENSTGUG00000005684	SNRPB	59	96.429	Taeniopygia_guttata
ENSG00000125835	SNRPB	74	98.077	ENSTRUG00000023094	snrpb	72	94.048	Takifugu_rubripes
ENSG00000125835	SNRPB	74	98.077	ENSTNIG00000002991	snrpb	70	94.048	Tetraodon_nigroviridis
ENSG00000125835	SNRPB	74	75.000	ENSUAMG00000016301	-	70	75.000	Ursus_americanus
ENSG00000125835	SNRPB	75	100.000	ENSUAMG00000005984	-	83	100.000	Ursus_americanus
ENSG00000125835	SNRPB	69	97.917	ENSUMAG00000002123	-	64	97.842	Ursus_maritimus
ENSG00000125835	SNRPB	74	75.000	ENSUMAG00000011571	-	63	75.000	Ursus_maritimus
ENSG00000125835	SNRPB	100	99.583	ENSVVUG00000025654	-	100	99.583	Vulpes_vulpes
ENSG00000125835	SNRPB	73	100.000	ENSVVUG00000018297	-	52	43.713	Vulpes_vulpes
ENSG00000125835	SNRPB	99	71.233	ENSVVUG00000011423	-	95	71.233	Vulpes_vulpes
ENSG00000125835	SNRPB	97	79.736	ENSVVUG00000010086	-	85	81.122	Vulpes_vulpes
ENSG00000125835	SNRPB	92	95.475	ENSXETG00000027266	snrpb	93	95.475	Xenopus_tropicalis
ENSG00000125835	SNRPB	51	88.889	ENSXCOG00000017217	snrpb	89	89.333	Xiphophorus_couchianus
ENSG00000125835	SNRPB	66	97.826	ENSXMAG00000028767	snrpb	58	95.556	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000387	spliceosomal snRNP assembly	18984161.	IDA	Process
GO:0000387	spliceosomal snRNP assembly	-	TAS	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	11991638.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	28076346.28781166.	IDA	Process
GO:0000398	mRNA splicing, via spliceosome	-	TAS	Process
GO:0003723	RNA binding	22681889.	HDA	Function
GO:0003723	RNA binding	18082603.	IPI	Function
GO:0005515	protein binding	8076607.11714716.11748230.12065586.12975319.16087681.18951082.18984161.19325628.22365833.	IPI	Function
GO:0005634	nucleus	28076346.28781166.	IDA	Component
GO:0005654	nucleoplasm	-	IDA	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005681	spliceosomal complex	2531083.	TAS	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0005683	U7 snRNP	11574479.	IDA	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	21113136.25555158.	IDA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005687	U4 snRNP	21873635.	IBA	Component
GO:0005687	U4 snRNP	21516107.	IDA	Component
GO:0005689	U12-type spliceosomal complex	15146077.	IDA	Component
GO:0005697	telomerase holoenzyme complex	18082603.	IDA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	18984161.	IDA	Component
GO:0005829	cytosol	-	TAS	Component
GO:0006369	termination of RNA polymerase II transcription	-	TAS	Process
GO:0006479	protein methylation	18495660.	IDA	Process
GO:0008334	histone mRNA metabolic process	-	TAS	Process
GO:0008380	RNA splicing	2531083.	TAS	Process
GO:0030532	small nuclear ribonucleoprotein complex	2531083.	TAS	Component
GO:0034709	methylosome	18984161.	IDA	Component
GO:0034719	SMN-Sm protein complex	18984161.	IDA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	26912367.	IDA	Component
GO:0051170	import into nucleus	-	TAS	Process
GO:0070034	telomerase RNA binding	18082603.	IPI	Function
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071005	U2-type precatalytic spliceosome	28781166.	IDA	Component
GO:0071007	U2-type catalytic step 2 spliceosome	28076346.	IDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	11991638.	IDA	Component
GO:0071204	histone pre-mRNA 3'end processing complex	-	IEA	Component
GO:0071208	histone pre-mRNA DCP binding	-	IEA	Function

EuRBPDB

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Eesembl ID

Cell lines and drugs in GSE70138 or GSE92742

Description

RBDs

RBPome

Literatures

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

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Select Dataset :

Input Drug :

Input Cell Line :

Eesembl ID

Cell lines and drugs in GSE70138 or GSE92742

Note: to get the extension of tumor abbreviations.