EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr2063540880Missense_MutationnovelE469K0.6
BLCAchr2063542447SilentnovelI260I0.22
BLCAchr2063547304Nonsense_MutationnovelQ54*0.29
BLCAchr2063540927Missense_Mutationrs369164878A453V0.06
BLCAchr2063542475Missense_MutationNAG251D0.29
BLCAchr2063547356Frame_Shift_DelnovelN37Tfs*340.32
BLCAchr2063547357Missense_MutationnovelP36H0.33
BRCAchr2063544266Missense_Mutationrs372015286R147W0.12
BRCAchr2063542192Missense_MutationnovelR306L0.17
CESCchr2063541505SilentnovelR354R0.23
CESCchr2063540841Missense_Mutationrs748858814A482T0.44
CESCchr2063547394Missense_Mutationrs543252716G24S0.18
CESCchr2063547287Silentrs36032098L59L0.19
CESCchr2063540875In_Frame_InsnovelR470_P471insQPQ0.04
CESCchr2063547295Frame_Shift_InsnovelL57Sfs*50.1
COADchr2063540865Missense_MutationNAA474T0.16
COADchr2063547399Missense_Mutationrs777121276A22V0.53
COADchr2063547271Missense_Mutationrs764471349R65W0.18
COADchr2063540945Missense_MutationnovelR447H0.34
COADchr2063542554Missense_Mutationrs142975228R225W0.29
COADchr2063542310Missense_MutationNAL267F0.18
COADchr2063543438Missense_MutationNAA174V0.2
COADchr2063542194Missense_MutationnovelM305I0.07
COADchr2063540826Missense_Mutationrs146373271H487Y0.33
COADchr2063543344Missense_MutationnovelQ205H0.42
COADchr2063542308Silentrs761533969L267L0.3
COADchr2063542460Missense_Mutationrs137951199A256V0.17
COADchr2063547402Missense_Mutationrs564747393P21L0.27
ESCAchr2063547392Silentrs780114763G24G0.31
ESCAchr2063540944SilentnovelR447R0.52
ESCAchr2063541204Missense_MutationnovelQ424H0.16
GBMchr2063541510Missense_Mutationrs61740255A353T0.49
GBMchr2063542231Missense_Mutationrs533446182S293L0.47
GBMchr2063547272Silentrs140773907A64A0.26
GBMchr2063542554Missense_Mutationrs142975228R225W0.22
GBMchr2063541590Missense_MutationnovelP326L0.25
HNSCchr2063542566Missense_MutationnovelD221Y0.38
HNSCchr2063547339Missense_MutationNAP42L0.23
HNSCchr2063541270SilentnovelV402V0.09
KIRCchr2063543341Missense_MutationNAN206K0.31
LGGchr2063547251SilentNAS71S0.47
LGGchr2063541207SilentnovelG423G0.44
LGGchr2063547399Missense_Mutationrs777121276A22V0.49
LGGchr2063541331Missense_Mutationrs374780062P382L0.39
LIHCchr2063540931Missense_MutationnovelP452S0.15
LIHCchr2063547262Missense_Mutationrs149894938G68R0.48
LIHCchr2063541506Missense_Mutationrs775845157R354Q0.2
LUADchr2063541470Missense_Mutationrs757824796V366A0.4
LUADchr2063541348Splice_SitenovelX377_splice0.18
LUADchr2063541236Missense_Mutationrs780151368V414I0.13
LUADchr2063547259Missense_MutationNAE69K0.24
LUADchr2063540831Missense_MutationNAR485I0.12
LUADchr2063543474Missense_MutationNAA162D0.24
LUADchr2063541213SilentNAT421T0.09
LUADchr2063543470Missense_MutationnovelQ163H0.31
LUADchr2063543383SilentNAE192E0.33
LUADchr2063541290Missense_MutationNAE396K0.1
LUADchr2063541326Frame_Shift_InsnovelS384Qfs*130.19
LUADchr2063541327Missense_MutationnovelS383R0.78
LUSCchr2063543477Missense_Mutationrs140476273R161Q0.18
LUSCchr2063547130Frame_Shift_DelnovelV102Lfs*920.13
LUSCchr2063543332SilentnovelL209L0.1
LUSCchr2063542296SilentNAA271A0.44
LUSCchr2063540935SilentnovelA450A0.41
LUSCchr2063541510Missense_MutationnovelA353S0.33
PAADchr2063541274Missense_Mutationrs139360881R401H0.17
PAADchr2063541533Missense_Mutationrs751206072R345H0.15
PRADchr2063541288Missense_MutationNAE396D0.17
PRADchr2063547242Silentrs780031609R74R0.06
PRADchr2063541249SilentnovelV409V0.35
PRADchr2063542192Missense_Mutationrs749399265R306H0.19
READchr2063547318Missense_MutationNAC49F0.37
READchr2063542204Missense_Mutationrs760106125T302M0.47
READchr2063542165Missense_MutationNAG315V0.14
READchr2063547408Missense_MutationNAI19N0.42
SARCchr2063542230Silentrs756318161S293S0.17
SKCMchr2063542293Silentrs560487403K272K0.42
SKCMchr2063543404SilentNAR185R0.14
SKCMchr2063542578Missense_MutationnovelA217T0.31
SKCMchr2063542579Splice_RegionnovelK216K0.32
SKCMchr2063541540Missense_MutationnovelE343K0.15
SKCMchr2063541541SilentnovelE342E0.15
SKCMchr2063547197Silentrs377302688F89F0.25
SKCMchr2063547296SilentNAF56F0.23
SKCMchr2063542566Missense_MutationnovelD221N0.58
SKCMchr2063544279SilentNAG142G0.75
SKCMchr2063547259Missense_MutationNAE69K0.5
SKCMchr2063542308SilentNAL267L0.43
SKCMchr2063544287Missense_Mutationrs757706555E140K0.6
SKCMchr2063540886Missense_MutationnovelP467S0.21
SKCMchr2063547331Missense_MutationNAP45S0.58
SKCMchr2063542274Missense_MutationnovelG279S0.29
STADchr2063540947Silentrs764818396P446P0.08
STADchr2063542265Missense_Mutationrs751298544H282Y0.45
STADchr2063547398Silentrs768842767A22A0.43
STADchr2063540870Missense_MutationNAS472C0.15
STADchr2063547123Missense_Mutationrs373892181T114M0.06
STADchr2063543363Missense_MutationNAA199V0.14
UCECchr2063541224Missense_MutationNAE418K0.35
UCECchr2063542542Missense_MutationNAE229K0.71
UCECchr2063542192Missense_Mutationrs749399265R306H0.37
UCECchr2063542542Missense_MutationNAE229K0.39
UCECchr2063543405Missense_MutationnovelR185Q0.4
UCECchr2063547448Missense_MutationnovelR6G0.53
UCECchr2063541295Missense_Mutationrs146362549A394V0.16
UCECchr2063542214Missense_MutationNAY299H0.16
UCECchr2063543464Missense_MutationnovelK165N0.1
UCECchr2063544287Missense_Mutationrs757706555E140K0.47
UCECchr2063544302Missense_MutationnovelL135I0.36
UCECchr2063541285SilentnovelA397A0.43
UCECchr2063540980Silentrs745966576T435T0.5
UCECchr2063541249SilentnovelV409V0.46
UCECchr2063541522Missense_Mutationrs374425555R349W0.41
UCECchr2063540878SilentnovelE469E0.3
UCECchr2063542542Missense_MutationNAE229K0.36
UCECchr2063547275Silentrs202085727T63T0.31
UCECchr2063543334SilentnovelL209L0.09
UCECchr2063541238Missense_MutationnovelG413D0.09
UCECchr2063543313Splice_SitenovelX215_splice0.46
UCECchr2063542553Missense_Mutationrs761225720R225Q0.33
UCECchr2063542184Missense_Mutationrs748368398N309D0.31
UCECchr2063547271Missense_Mutationrs764471349R65W0.09
UCECchr2063542263Silentrs766255803H282H0.35
UCECchr2063544325Missense_Mutationrs370061091R127Q0.34
UCECchr2063547182Silentrs549550690S94S0.45

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CESCDEL0.03050.00029523
CHOLDEL0.02783.3987e-23
DLBCDEL0.02080.011841
HNSCDEL0.04027.0766e-07
KIRCDEL02.3538e-09
KIRPDEL01.462e-09
LIHCAMP0.28920.013414
LUADAMP0.36828.1427e-15
LUADDEL0.05040.0024765
LUSCDEL0.10582.5882e-07
MESODEL02.434e-07
OVAMP0.63215.6628e-10
PRADAMP0.05890.07085
READAMP0.86670.033971
READDEL0.00612.1758e-10
SARCAMP0.30350.033553
SKCMAMP0.44960.058021
TGCTDEL0.07330.00046313
UCSDEL0.01790.0051125

Survival Analysis
CancerP-value Q-value
KIRC0.0014

Kaplan-Meier Survival Analysis

STAD0.00092

Kaplan-Meier Survival Analysis

ACC0.0001

Kaplan-Meier Survival Analysis

HNSC0.0013

Kaplan-Meier Survival Analysis

LUSC0.039

Kaplan-Meier Survival Analysis

COAD0.0028

Kaplan-Meier Survival Analysis

PAAD0.022

Kaplan-Meier Survival Analysis

BLCA0.0016

Kaplan-Meier Survival Analysis

READ0.028

Kaplan-Meier Survival Analysis

LAML0.021

Kaplan-Meier Survival Analysis

LGG0.011

Kaplan-Meier Survival Analysis

OV0.0098

Kaplan-Meier Survival Analysis

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000125508 (Gene tree)
Gene ID
6725
Gene Symbol
SRMS
Alias
SRM|dJ697K14.1|PTK70|C20orf148
Full Name
src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
7,581 bases
Position
chr20:63,539,924-63,547,504
Accession
11298
RBP type
non-canonical RBP
Summary
(Src-Related Kinase Lacking C-Terminal Regulatory Tyrosine And N-Terminal Myristylation Sites) is a Protein Coding gene. Diseases associated with SRMS include Skeletal Muscle Cancer and Muscle Cancer. Among its related pathways are Signaling by GPCR and Focal Adhesion. Gene Ontology (GO) annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein tyrosine kinase activity. An important paralog of this gene is PTK6.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000217188SRMS-2011516-ENSP00000217188488 (aa)-Q9H3Y6
Gene Model
Click here to download ENSG00000125508's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000125508Platelet Function Tests6.3500000E-006-
ENSG00000125508Magnesium1.9270000E-005-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000125508's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0004713protein tyrosine kinase activity25897081.EXPFunction
GO:0004713protein tyrosine kinase activity23822091.29496907.IDAFunction
GO:0004715non-membrane spanning protein tyrosine kinase activity21873635.IBAFunction
GO:0005102signaling receptor binding21873635.IBAFunction
GO:0005515protein binding23822091.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005737cytoplasm23822091.29496907.IDAComponent
GO:0005829cytosol-TASComponent
GO:0007169transmembrane receptor protein tyrosine kinase signaling pathway21873635.IBAProcess
GO:0009968negative regulation of signal transduction-TASProcess
GO:0018108peptidyl-tyrosine phosphorylation29496907.IDAProcess
GO:0030154cell differentiation21873635.IBAProcess
GO:0031234extrinsic component of cytoplasmic side of plasma membrane21873635.IBAComponent
GO:0038083peptidyl-tyrosine autophosphorylation21873635.IBAProcess
GO:0038083peptidyl-tyrosine autophosphorylation23822091.IDAProcess
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