EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
11687974A novel nuclear protein, 5qNCA (LOC51780) is a candidate for the myeloid leukemia tumor suppressor gene on chromosome 5 band q31.Oncogene2001 Oct 18Hu Z-
28540746KDM3B shows tumor-suppressive activity and transcriptionally regulates HOXA1 through retinoic acid response elements in acute myeloid leukemia.Leuk Lymphoma2018 JanXu Xdoi: 10.1080/10428194.2017.1324156
23266085Histone lysine demethylases in breast cancer.Crit Rev Oncol Hematol2013 MayPaolicchi Edoi: 10.1016/j.critrevonc.2012.11.008

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr5138386579SilentnovelV446V0.45
BLCAchr5138415140Missense_MutationnovelE1070Q0.36
BLCAchr5138419132SilentnovelL1205L0.32
BLCAchr5138420739Missense_MutationNAE1250G0.13
BLCAchr5138417582Missense_MutationnovelR1136K0.09
BLCAchr5138386335Frame_Shift_DelnovelR365Tfs*60.45
BLCAchr5138430390Missense_MutationnovelD1679N0.27
BLCAchr5138424135Missense_MutationnovelE1345K0.47
BLCAchr5138391214Missense_MutationnovelQ528K0.27
BLCAchr5138377809SilentnovelQ188Q0.11
BLCAchr5138391404Missense_Mutationrs374559198R591Q0.16
BLCAchr5138435664SilentnovelT1750T0.16
BLCAchr5138415134Missense_MutationNAT1068A0.24
BLCAchr5138381582Nonsense_MutationnovelQ258*0.55
BLCAchr5138427991Missense_MutationnovelR1553K0.42
BLCAchr5138386066Frame_Shift_InsnovelR276Kfs*210.1
BLCAchr5138420794Silentrs751194137P1268P0.14
BLCAchr5138431458Missense_MutationnovelE1702K0.32
BLCAchr5138427238Missense_MutationnovelD1518N0.05
BLCAchr5138428026Missense_MutationNAD1565H0.19
BLCAchr5138425553Missense_MutationNAD1461G0.52
BLCAchr5138391664Missense_MutationnovelH678Y0.35
BLCAchr5138425517Missense_MutationNAR1449M0.22
BLCAchr5138399959Missense_MutationNAG1049E0.18
BLCAchr5138386355Nonsense_MutationnovelE372*0.83
BRCAchr5138424200Silentrs771965473V1366V0.22
BRCAchr5138430331Missense_MutationNAR1659H0.21
BRCAchr5138386193Missense_MutationNAE318K0.22
BRCAchr5138392257SilentnovelL875L0.29
BRCAchr5138386430Missense_MutationNAE397Q0.19
BRCAchr5138424083Missense_MutationNAK1327N0.35
BRCAchr5138391662Missense_MutationnovelS677C0.2
BRCAchr5138386301Missense_MutationNAI354F0.14
BRCAchr5138386254Missense_MutationNAR338T0.3
BRCAchr51384357643'UTRnovel0.19
BRCAchr5138424250Missense_MutationnovelS1383Y0.22
BRCAchr5138435671Missense_Mutationrs760813802A1753T0.23
BRCAchr5138391769Frame_Shift_DelNAG714Afs*810.22
BRCAchr5138425537Missense_Mutationrs745528581D1456N0.11
CESCchr5138435667SilentnovelL1751L0.06
CESCchr5138419208Nonsense_MutationNAQ1231*0.25
CESCchr5138428040SilentNAV1569V0.19
CESCchr5138426974Splice_SiteNAX1471_splice0.37
CESCchr5138427201SilentNAL1505L0.44
CESCchr5138391976Missense_MutationNAD782N0.46
CESCchr5138399859Splice_SitenovelX1016_splice0.23
CESCchr5138386021Splice_SitenovelX262_splice0.43
CESCchr5138424314SilentNAI1404I0.31
CESCchr5138429960Nonsense_MutationNAR1630*0.25
CESCchr5138435654Missense_MutationNAA1747V0.29
CESCchr5138420788SilentnovelV1266V0.1
CESCchr5138391668Missense_MutationnovelS679C0.41
CESCchr5138391785Missense_Mutationrs754696681S718C0.38
CESCchr5138391918SilentNAL762L0.36
CESCchr5138391961Missense_MutationNAL777V0.37
CESCchr5138392088Nonsense_MutationNAS819*0.41
CESCchr5138392061Missense_MutationnovelS810L0.13
COADchr5138399931Missense_MutationNAN1040D0.17
COADchr5138420901Missense_MutationNAL1304H0.24
COADchr5138377777Missense_MutationNAV178F0.33
COADchr5138391077Missense_MutationNAP482H0.38
COADchr5138391421Missense_MutationNAS597T0.42
COADchr5138420919Missense_MutationNAD1310G0.47
COADchr5138429880Missense_MutationNAI1603S0.2
COADchr5138391505Frame_Shift_DelNAK627Nfs*600.38
COADchr5138391121Missense_MutationNAA497T0.42
COADchr5138381532Missense_MutationnovelS241L0.3
COADchr5138391954Silentrs140375150G774G0.38
COADchr5138420960Missense_MutationnovelA1324P0.25
COADchr5138392036Nonsense_MutationnovelR802*0.27
COADchr5138417560Nonsense_MutationnovelR1129*0.33
COADchr5138398393Splice_SiteNAX1016_splice0.18
COADchr5138386094Missense_MutationNAR285W0.18
COADchr5138381588Missense_MutationNAE260K0.27
COADchr5138427312Silentrs368913432N1542N0.21
COADchr5138400006Missense_Mutationrs539384678R1065C0.35
COADchr5138427236Missense_MutationnovelR1517Q0.21
COADchr5138377822Nonsense_MutationNAR193*0.35
COADchr5138393230Missense_MutationnovelP897S0.13
COADchr5138386202Nonsense_MutationNAR321*0.19
COADchr5138391079Missense_MutationNAL483V0.15
COADchr5138430333Missense_MutationnovelK1660E0.04
COADchr5138391186Missense_MutationNAD518E0.08
COADchr5138424314SilentNAI1404I0.1
COADchr51384357723'UTRnovel0.32
COADchr5138420936Frame_Shift_DelNAP1317Rfs*100.45
COADchr5138393358Missense_MutationNAF939L0.36
COADchr5138425569Silentrs762393674F1466F0.2
ESCAchr5138425550Missense_Mutationrs529065296R1460Q0.2
ESCAchr5138424254Missense_MutationnovelW1384C0.41
ESCAchr5138391698Missense_MutationnovelK689T0.22
ESCAchr5138391799Missense_MutationnovelG723S0.7
ESCAchr5138417564Missense_MutationnovelQ1130L0.17
GBMchr5138391597Missense_MutationnovelQ655H0.09
GBMchr5138372694SilentnovelG71G0.07
GBMchr5138391836Missense_MutationnovelP735R0.04
GBMchr5138386202Nonsense_MutationNAR321*0.05
GBMchr5138392015Nonsense_MutationnovelK795*0.18
GBMchr5138424186Missense_MutationnovelT1362A0.06
GBMchr5138377771Missense_MutationnovelE176K0.04
GBMchr5138377720Missense_MutationnovelM159L0.06
GBMchr5138392217Missense_MutationnovelG862A0.05
GBMchr5138391071Missense_MutationnovelS480L0.05
GBMchr5138425537Missense_Mutationrs745528581D1456N0.2
GBMchr5138424225Missense_MutationnovelV1375L0.1
GBMchr5138430397Missense_MutationnovelV1681A0.06
GBMchr5138393307SilentnovelY922Y0.27
GBMchr5138425430Missense_MutationnovelV1420E0.17
GBMchr5138393322SilentnovelE927E0.08
GBMchr5138393284Frame_Shift_DelnovelR915Vfs*210.06
GBMchr5138391863Missense_MutationnovelS744I0.11
GBMchr5138399873Nonsense_MutationnovelW1020*0.08
HNSCchr5138379698Missense_MutationnovelS232F0.15
HNSCchr5138391405Frame_Shift_DelnovelK592Cfs*180.2
HNSCchr5138426977Nonsense_MutationNAR1472*0.2
HNSCchr5138393309Frame_Shift_DelnovelK924Sfs*120.32
HNSCchr5138392027SilentnovelL799L0.13
HNSCchr5138417608Missense_MutationnovelQ1145K0.2
HNSCchr5138419132SilentnovelL1205L0.32
HNSCchr5138430331Missense_MutationNAR1659H0.17
HNSCchr5138391491Missense_MutationnovelN620S0.1
HNSCchr5138399916Missense_MutationnovelE1035K0.25
KIRCchr5138377818Silentrs770604921F191F0.27
KIRCchr5138425443SilentNAL1424L0.08
KIRCchr5138372831Missense_MutationNAW117L0.21
KIRCchr51384357103'UTRnovel0.17
KIRCchr51384357413'UTRnovel0.59
KIRPchr5138379684SilentNAR227R0.36
KIRPchr5138393231Missense_MutationnovelP897L0.53
KIRPchr5138381568Missense_MutationNAD253A0.35
KIRPchr5138430343Missense_MutationNAY1663C0.15
KIRPchr5138391274Missense_MutationnovelA548T0.42
KIRPchr5138424336Missense_MutationnovelG1412R0.24
LAMLchr5138393354Missense_MutationNAR938H0.79
LAMLchr5138392111Frame_Shift_DelNAQ827Sfs*80.67
LGGchr5138372750Missense_MutationNAL90H0.38
LGGchr5138381527SilentNAI239I0.25
LGGchr5138386114SilentnovelS291S0.36
LGGchr5138386271Missense_MutationnovelS344T0.11
LIHCchr5138424264Missense_MutationNAG1388W0.29
LIHCchr5138424265Missense_MutationnovelG1388V0.28
LIHCchr5138427285Missense_MutationnovelR1533S0.69
LIHCchr5138398310SilentnovelK988K0.13
LIHCchr5138417510Missense_MutationnovelH1112L0.05
LIHCchr5138419133Nonsense_MutationnovelK1206*0.23
LIHCchr5138372724SilentnovelK81K0.44
LIHCchr5138419011Missense_MutationNAG1165A0.04
LIHCchr5138430420Missense_MutationNAH1689Y0.09
LIHCchr5138420749SilentnovelS1253S0.22
LIHCchr5138398312Missense_MutationNAY989C0.33
LUADchr5138391447Missense_MutationnovelF605L0.25
LUADchr5138391955Missense_Mutationrs755278940G775S0.21
LUADchr5138391265Missense_MutationNAE545Q0.19
LUADchr5138391598Missense_MutationNAA656S0.46
LUADchr5138386596Missense_MutationNAG452D0.24
LUADchr5138393208SilentnovelK889K0.2
LUADchr5138391891Silentrs759333795G753G0.15
LUADchr5138386183SilentNAS314S0.27
LUADchr5138415239Missense_MutationnovelA1103T0.09
LUADchr5138420726Missense_MutationnovelV1246L0.08
LUADchr5138372821Missense_MutationNAI114F0.48
LUADchr5138392229Missense_MutationNAP866H0.36
LUADchr5138399971Missense_MutationNAC1053F0.13
LUADchr5138417513Missense_MutationnovelA1113D0.08
LUADchr5138424212SilentNAV1370V0.38
LUADchr5138419077Missense_MutationNAR1187K0.12
LUADchr5138372807Missense_MutationnovelG109D0.07
LUADchr5138417499SilentnovelG1108G0.11
LUADchr5138391850Missense_MutationNAT740S0.28
LUADchr5138420729Missense_MutationnovelL1247F0.1
LUADchr5138419036SilentNAP1173P0.26
LUADchr5138386082Missense_MutationNAG281W0.29
LUADchr5138391972SilentnovelP780P0.25
LUADchr5138424127Nonsense_MutationnovelS1342*0.05
LUADchr5138391526Missense_MutationNAE632Q0.14
LUADchr5138398359Missense_MutationNAE1005Q0.3
LUSCchr5138427269Missense_MutationNAP1528R0.39
LUSCchr5138398292Missense_MutationnovelI982M0.36
LUSCchr5138398293Missense_MutationnovelD983H0.16
LUSCchr5138398360Missense_MutationnovelE1005G0.25
LUSCchr5138425518Missense_MutationNAR1449S0.28
LUSCchr5138420806SilentnovelK1272K0.37
LUSCchr5138391095Missense_MutationnovelG488E0.31
LUSCchr5138391876Missense_MutationnovelE748D0.27
LUSCchr5138386204SilentNAR321R0.28
LUSCchr5138392154Frame_Shift_InsnovelN848Dfs*130.23
LUSCchr5138391081Missense_MutationNAL483F0.11
LUSCchr5138391907Missense_MutationnovelN759D0.16
LUSCchr5138391708SilentnovelL692L0.94
LUSCchr5138399873Nonsense_MutationnovelW1020*0.57
OVchr5138425452Missense_MutationnovelE1427D0.06
OVchr5138386221Missense_MutationnovelG327E0.12
OVchr5138391195Frame_Shift_DelnovelS522Pfs*430.54
OVchr5138392175Missense_Mutationrs148445583N848S0.16
OVchr5138391898Missense_MutationnovelQ756K0.14
OVchr5138391190Missense_MutationnovelD520H0.04
OVchr5138424075Missense_MutationnovelG1325R0.05
OVchr5138424257SilentnovelL1385L0.09
OVchr5138424223Missense_MutationnovelN1374S0.06
OVchr5138426992Missense_MutationnovelD1477H0.06
OVchr5138425435Missense_MutationnovelK1422Q0.18
OVchr5138392255Missense_MutationNAL875M0.64
OVchr5138429961Missense_MutationnovelR1630Q0.08
OVchr5138393337Missense_MutationnovelD932E0.11
OVchr5138386306SilentnovelR355R0.08
OVchr5138435688SilentNAL1758L0.3
PAADchr5138419124Frame_Shift_DelnovelS1203*0.3
PAADchr5138429959SilentnovelL1629L0.18
PAADchr5138431544SilentnovelH1730H0.22
PRADchr5138428032Missense_MutationnovelV1567I0.19
PRADchr5138386247Missense_MutationNAD336Y0.2
PRADchr5138392238Missense_MutationNAR869Q0.1
PRADchr5138392105Nonsense_MutationnovelE825*0.08
PRADchr5138381587Silentrs367814427S259S0.49
READchr5138393339Missense_MutationnovelS933F0.28
READchr5138372812Nonsense_MutationnovelR111*0.04
READchr5138391297Missense_MutationnovelD555E0.44
READchr5138386183SilentNAS314S0.06
READchr5138391241Missense_MutationnovelS537R0.35
READchr5138430330Missense_MutationnovelR1659C0.48
SARCchr5138386505Missense_MutationnovelA422S0.1
SARCchr5138430422Silentrs541133556H1689H0.29
SARCchr5138420793Missense_Mutationrs763718862P1268L0.12
SKCMchr5138430401SilentnovelF1682F0.4
SKCMchr5138430355Missense_MutationnovelG1667V0.17
SKCMchr5138393301Frame_Shift_DelnovelR921Vfs*50.38
SKCMchr5138391690SilentnovelL686L0.39
SKCMchr5138420866SilentnovelS1292S0.52
SKCMchr5138419034Missense_MutationNAP1173S0.08
SKCMchr5138419035Missense_MutationnovelP1173L0.08
SKCMchr5138430394Missense_MutationNAA1680V0.23
SKCMchr5138391529Missense_Mutationrs751487871P633S0.17
SKCMchr5138391780SilentNAS716S0.24
SKCMchr5138418989Missense_MutationNAE1158K0.64
SKCMchr5138425573Missense_MutationNAI1468F0.17
SKCMchr5138419148Missense_MutationNAP1211S0.44
SKCMchr5138431497Missense_MutationNAR1715C0.32
SKCMchr5138420956SilentNAS1322S0.29
SKCMchr5138391686Missense_MutationNAS685F0.73
SKCMchr5138427969Splice_RegionNAL1546L0.45
SKCMchr5138429959SilentNAL1629L0.26
SKCMchr5138425549Missense_MutationNAR1460W0.88
SKCMchr5138391765SilentNAT711T0.23
SKCMchr5138398361SilentNAE1005E0.4
SKCMchr5138420716SilentNAS1242S0.42
SKCMchr5138425570Missense_MutationNAE1467K0.13
SKCMchr5138419148Missense_MutationNAP1211S0.24
SKCMchr5138386328Missense_MutationNAN363H0.29
SKCMchr5138430251Splice_RegionNAV1632V0.57
SKCMchr5138391334SilentNAL568L0.34
SKCMchr5138398306Missense_MutationnovelS987L0.25
SKCMchr5138419017Missense_Mutationrs528636129P1167L0.24
SKCMchr5138379590Frame_Shift_DelnovelY196*0.23
SKCMchr5138391538Missense_MutationNAP636S0.3
SKCMchr5138391708SilentNAL692L0.28
SKCMchr5138372782Missense_MutationNAR101C0.11
SKCMchr5138420714Missense_MutationNAS1242A0.87
SKCMchr5138420715Missense_Mutationrs562855380S1242F0.26
SKCMchr5138386308Missense_MutationnovelF356S0.32
SKCMchr5138420955Missense_MutationnovelS1322F0.43
SKCMchr5138391539Missense_MutationNAP636L0.19
SKCMchr5138391726Silentrs770186676S698S0.56
SKCMchr5138420931Missense_MutationNAP1314L0.67
SKCMchr5138391058Missense_MutationNAL476F0.24
SKCMchr5138398206Missense_MutationNAR954C0.63
SKCMchr5138391923Missense_MutationnovelT764I0.43
STADchr5138391401Missense_MutationNAD590A0.49
STADchr5138420936Frame_Shift_DelNAP1317Rfs*100.2
STADchr5138379682Missense_MutationNAR227C0.2
STADchr5138393354Missense_MutationNAR938H0.16
STADchr5138391746Missense_MutationnovelV705G0.05
STADchr5138400001Missense_Mutationrs758977082R1063Q0.3
STADchr5138398206Missense_MutationNAR954C0.3
STADchr5138391803Missense_MutationNAR724H0.41
STADchr5138420936Frame_Shift_DelNAP1317Rfs*100.23
STADchr5138379586Missense_MutationNAP195S0.36
STADchr5138435654Missense_MutationNAA1747V0.22
STADchr5138427286Missense_MutationnovelP1534S0.38
STADchr5138429868Missense_MutationnovelT1599M0.26
STADchr5138398359Missense_MutationNAE1005Q0.11
STADchr5138386504SilentNAA421A0.07
STADchr5138420941Silentrs144228142P1317P0.31
STADchr5138381587Silentrs367814427S259S0.34
STADchr5138393333Missense_MutationNAD931G0.21
STADchr5138386615SilentnovelS458S0.25
STADchr5138426991Missense_MutationNAE1476D0.23
STADchr5138420936Frame_Shift_DelNAP1317Rfs*100.25
STADchr5138377800SilentNAQ185Q0.34
STADchr5138399971Missense_MutationnovelC1053Y0.35
STADchr5138381588Missense_MutationNAE260K0.12
STADchr5138391901Nonsense_MutationnovelQ757*0.31
STADchr5138391389Missense_MutationNAG586V0.21
STADchr5138420936Frame_Shift_DelNAP1317Rfs*100.3
STADchr5138372790Silentrs779436763D103D0.14
STADchr5138430275Frame_Shift_DelnovelP1642Lfs*360.21
TGCTchr5138393374Splice_SitenovelX944_splice0.21
TGCTchr5138427016Missense_MutationnovelL1485F0.28
THCAchr5138428080Frame_Shift_InsnovelD1583Vfs*40.02
THCAchr5138391972Frame_Shift_DelnovelA781Qfs*140.44
UCECchr5138398349Silentrs141260024L1001L0.37
UCECchr5138425549Missense_MutationNAR1460W0.28
UCECchr5138392194Missense_MutationnovelE854D0.56
UCECchr5138391972Silentrs187275789P780P0.22
UCECchr5138399962Missense_MutationNAF1050S0.28
UCECchr5138425424Missense_MutationNAS1418L0.36
UCECchr5138428064SilentNAI1577I0.29
UCECchr5138379708Splice_RegionnovelE235E0.35
UCECchr5138399982Nonsense_MutationnovelY1057*0.47
UCECchr5138391593Missense_MutationNAS654F0.41
UCECchr5138425549Missense_MutationNAR1460W0.38
UCECchr5138419147Silentrs201802253P1210P0.29
UCECchr5138386520Missense_MutationnovelA427T0.55
UCECchr5138420936Frame_Shift_DelNAP1317Rfs*100.12
UCECchr5138391550Missense_MutationNAF640L0.45
UCECchr5138398219Missense_MutationnovelF958S0.3
UCECchr5138391469Missense_Mutationrs776949034R613C0.41
UCECchr5138426977Nonsense_MutationNAR1472*0.39
UCECchr5138381513Splice_Regionnovel0.1
UCECchr5138377759Missense_MutationnovelA172T0.39
UCECchr5138424165Missense_Mutationrs746068888R1355W0.87
UCECchr5138431497Missense_MutationNAR1715C0.45
UCECchr5138386469Missense_MutationNAL410M0.33
UCECchr5138415170SilentNAL1080L0.17
UCECchr5138420876Missense_MutationNAL1296I0.2
UCECchr5138429936Missense_MutationNAA1622T0.2
UCECchr5138386615Silentrs745953070S458S0.38
UCECchr5138391205SilentNAL525L0.49
UCECchr5138391469Missense_Mutationrs776949034R613C0.43
UCECchr5138375168Missense_Mutationrs138966363R146W0.24
UCECchr5138391031Missense_MutationNAL467M0.33
UCECchr5138391129SilentNAE499E0.18
UCECchr5138391934Missense_Mutationrs147174917V768I0.22
UCECchr5138420871Missense_MutationNAR1294Q0.12
UCECchr5138427046Nonsense_MutationNAR1495*0.16
UCECchr5138386351Missense_MutationnovelQ370H0.28
UCECchr5138391520Nonsense_MutationnovelR630*0.19
UCECchr5138398266Missense_MutationnovelP974T0.19
UCECchr5138425521SilentnovelN1450N0.16
UCECchr5138377736Frame_Shift_DelnovelN165Tfs*100.12
UCECchr5138430404Missense_MutationnovelI1683M0.45
UCECchr51384357913'UTRnovel0.5
UCECchr5138419107Missense_Mutationrs777239432S1197L0.23
UCECchr5138391026Missense_MutationnovelS465Y0.55
UCECchr5138386063Missense_MutationnovelK274N0.18
UCECchr5138399869Missense_MutationnovelA1019V0.24
UCECchr5138419153SilentnovelC1212C0.47
UCECchr5138424273SilentnovelL1391L0.2
UCECchr5138392170Frame_Shift_DelnovelN848Mfs*280.31
UCECchr5138386202Nonsense_MutationNAR321*0.11
UCECchr5138430409Missense_MutationnovelA1685V0.28
UCECchr5138430275Frame_Shift_DelnovelP1642Lfs*360.16
UCECchr5138391355Missense_MutationnovelL575I0.5
UCECchr5138427313Missense_MutationnovelA1543T0.21
UCECchr5138381587Silentrs367814427S259S0.36
UCECchr5138391933Silentrs750944984N767N0.38
UCECchr5138391330SilentNAS566S0.2
UCECchr5138386398Missense_MutationnovelS386Y0.55
UCECchr5138391520Nonsense_MutationnovelR630*0.45
UCECchr5138399895Missense_MutationNAR1028W0.47
UCECchr5138415209Missense_MutationnovelL1093I0.44
UCECchr5138420766Missense_Mutationrs371034627S1259L0.48
UCECchr5138420919Missense_MutationNAD1310G0.4
UCECchr5138391068Nonsense_MutationnovelS479*0.63
UCECchr5138379657SilentNAV218V0.34
UCECchr5138391712Missense_Mutationrs781672306I694V0.39
UCECchr5138391515Missense_MutationnovelL628S0.44
UCECchr5138427053Missense_MutationnovelM1497T0.32
UCECchr5138393284Missense_MutationNAR915C0.52
UCECchr5138391717SilentnovelT695T0.17
UCECchr5138424249Missense_MutationnovelS1383P0.17
UCECchr5138431513Missense_MutationnovelF1720C0.12
UCECchr5138391934Missense_Mutationrs147174917V768I0.38
UCECchr5138399877Nonsense_MutationnovelR1022*0.53
UCECchr5138392157Frame_Shift_InsnovelK844Efs*110.5
UCECchr5138386617Missense_MutationNAG459E0.5
UCECchr5138391436Frame_Shift_DelNAT602Lfs*90.43
UCECchr5138386029Missense_Mutationrs188469319T263M0.38
UCECchr5138386183SilentNAS314S0.37
UCECchr5138391845Missense_MutationnovelM738T0.33
UCECchr5138430356Silentrs768314346G1667G0.44
UCECchr5138415218Missense_MutationnovelT1096A0.37
UCECchr5138391077Missense_MutationNAP482H0.19
UCECchr5138430405Missense_MutationnovelP1684S0.35
UCECchr51384359243'UTRnovel0.5
UCECchr5138391090SilentNAG486G0.44
UCECchr5138391686Missense_MutationNAS685Y0.29
UCECchr5138372812Nonsense_MutationnovelR111*0.17
UCECchr5138428072Missense_MutationNAG1580V0.3
UCECchr5138399886Missense_Mutationrs763983126R1025C0.25
UCECchr5138420838Missense_MutationNAA1283V0.27
UCECchr5138375194SilentnovelL154L0.09
UCECchr5138392106Missense_MutationnovelE825G0.49
UCECchr5138391769Frame_Shift_DelNAG714Afs*810.23
UCECchr5138427188Splice_SitenovelX1501_splice0.26
UCECchr5138391792Frame_Shift_DelnovelN722Mfs*730.39
UCECchr5138427046Nonsense_MutationNAR1495*0.43
UCECchr5138392201SilentnovelL857L0.46
UCECchr5138398294Missense_MutationnovelD983A0.05
UCECchr5138399886Missense_Mutationrs763983126R1025C0.28
UCECchr5138391884Missense_Mutationrs776596787T751I0.42
UCECchr5138427312Silentrs368913432N1542N0.37
UCECchr5138425424Missense_MutationNAS1418L0.46
UCECchr5138386269Missense_Mutationrs140546320P343L0.27
UCECchr5138392061Missense_MutationnovelS810L0.27
UCECchr5138400008Silentrs771317491R1065R0.28
UCECchr5138420887Silentrs759554146S1299S0.62
UCECchr5138426983Missense_MutationnovelR1474W0.3
UCECchr5138428036Missense_MutationnovelN1568I0.29
UCECchr5138425549Missense_MutationNAR1460W0.31
UCECchr5138393306Missense_MutationnovelY922C0.41
UCECchr5138399911Missense_MutationnovelV1033A0.37
UCECchr5138391933Silentrs750944984N767N0.16
UCECchr5138429900Missense_MutationNAP1610T0.14
UCECchr5138426977Nonsense_MutationNAR1472*0.45
UCECchr5138379608Missense_MutationnovelR202K0.34
UCECchr5138391543Missense_MutationnovelF637L0.51
UCECchr5138420854Silentrs772483803T1288T0.35
UCECchr5138430341SilentnovelL1662L0.28
UCSchr5138419226Missense_MutationnovelT1237A0.12
UVMchr5138415133Splice_RegionnovelE1067E0.22

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
KIRPAMP0.10760.069756
KIRPDEL0.03820.11554
LAMLDEL0.0891.2971e-07
LUADDEL0.26947.4776e-05
LUSCDEL0.62080.002071
MESODEL0.12640.20184
PRADAMP0.02850.16448
SKCMDEL0.28882.2081e-08
THCAAMP0.03610.075436
THCADEL00.23456

Survival Analysis
CancerP-value Q-value
MESO0.023

Kaplan-Meier Survival Analysis

COAD0.026

Kaplan-Meier Survival Analysis

READ0.003

Kaplan-Meier Survival Analysis

LAML0.007

Kaplan-Meier Survival Analysis

LIHC0.01

Kaplan-Meier Survival Analysis

LGG0.00027

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000120733 (Gene tree)
Gene ID
51780
Gene Symbol
KDM3B
Alias
KIAA1082|NET22|C5orf7|JMJD1B
Full Name
lysine demethylase 3B
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
84,433 bases
Position
chr5:138,352,596-138,437,028
Accession
1337
RBP type
non-canonical RBP
Summary
(Lysine Demethylase 3B) is a Protein Coding gene. Diseases associated with KDM3B include Persistent Hyperplastic Primary Vitreous. Among its related pathways are Chromatin Regulation / Acetylation and Chromatin organization. Gene Ontology (GO) annotations related to this gene include dioxygenase activity. An important paralog of this gene is JMJD1C.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000510866KDM3B-2076324-ENSP00000425186274 (aa)-H0Y9V5
ENST00000508386KDM3B-205540--- (aa)--
ENST00000509468KDM3B-206576--- (aa)--
ENST00000504095KDM3B-202555--- (aa)--
ENST00000512928KDM3B-208627--- (aa)--
ENST00000507996KDM3B-2043034-ENSP0000042301220 (aa)-H0Y946
ENST00000542866KDM3B-2093634-ENSP00000439462759 (aa)-Q7LBC6
ENST00000314358KDM3B-2016813XM_005272018ENSP000003265631761 (aa)XP_005272075Q7LBC6
ENST00000505756KDM3B-203654--- (aa)--
Gene Model
Click here to download ENSG00000120733's gene model file
Pathways
Pathway IDPathway NameSource
hsa04714ThermogenesisKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000120733Blood Pressure2.8471301E-006-
ENSG00000120733Menarche9E-1425231870
ENSG00000120733Prostatic Neoplasms4E-827515689
ENSG00000120733Electromagnetic Radiation4E-827515689
ENSG00000120733Menarche5E-821102462
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000120733rs351318955138413188?Autism spectrum disorder or schizophrenia28540026[1.04-1.09]1.0638298EFO_0000692|EFO_0003756
ENSG00000120733rs171718185138389314CMenarche (age at onset)25231870[0.028-0.052] unit increase0.04EFO_0004703
ENSG00000120733rs7576475138371626AMenarche (age at onset)21102462[1.62-3.18] week decrease2.4EFO_0004703
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000120733's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000785chromatin21873635.IBAComponent
GO:0000976transcription regulatory region sequence-specific DNA binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0016209antioxidant activity-IEAFunction
GO:0031490chromatin DNA binding21873635.IBAFunction
GO:0032454histone demethylase activity (H3-K9 specific)21873635.IBAFunction
GO:0033169histone H3-K9 demethylation21873635.IBAProcess
GO:0046872metal ion binding-IEAFunction
GO:0051213dioxygenase activity-IEAFunction
GO:0055114oxidation-reduction process-IEAProcess
GO:0072718response to cisplatin-IEAProcess
GO:0098869cellular oxidant detoxification-IEAProcess
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