EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr1109621097SilentnovelR28R0.37
BLCAchr1109628250SilentnovelL470L0.52
BLCAchr1109630337Silentrs368213563P750P0.16
BLCAchr1109630287Missense_MutationnovelP734A0.05
BLCAchr1109630288Missense_Mutationrs761542502P734L0.05
BLCAchr1109629337Missense_MutationnovelF624C0.51
BLCAchr1109621123In_Frame_DelnovelP38_R42del0.21
BLCAchr1109625775Missense_MutationnovelQ166H0.15
BLCAchr1109629453Missense_MutationnovelT663S0.04
BLCAchr1109626730Missense_MutationnovelP233Q0.43
BLCAchr1109629823Silentrs772396309L684L0.3
BRCAchr11096200765'Flanknovel0.11
BRCAchr1109628492SilentNAI522I0.17
BRCAchr1109625674Missense_Mutationrs781032788R133C0.4
BRCAchr1109626396Missense_MutationnovelR221Q0.12
BRCAchr1109628168Missense_MutationnovelE443G0.11
BRCAchr1109625718In_Frame_DelnovelE149_P152del0.67
CESCchr1109625700SilentnovelR141R0.37
CESCchr1109626832Missense_Mutationrs764075553R267H0.3
CESCchr11096318163'UTRnovel0.45
CESCchr1109621202SilentnovelG63G0.22
CESCchr1109627793Missense_Mutationrs776868175R378W0.47
CESCchr1109628276Missense_MutationNAA479V0.23
CESCchr1109630683Missense_MutationNAE774Q0.3
CESCchr1109629823SilentnovelL684L0.23
COADchr1109629421Missense_MutationnovelD652A0.14
COADchr1109621052SilentnovelS13S0.24
COADchr1109626346Frame_Shift_DelNAG205Vfs*1580.18
COADchr1109628217SilentNAV459V0.51
COADchr1109629396SilentnovelL644L0.27
COADchr11096312313'UTRnovel0.28
COADchr1109625308Missense_Mutationrs202115880R87W0.26
COADchr1109625623Intronrs7717194430.41
COADchr1109630351Missense_MutationNAR755H0.36
COADchr1109625616Intronrs7551767610.4
COADchr1109629217SilentnovelL614L0.34
COADchr1109629898Silentrs369921795H709H0.1
COADchr1109630709Silentrs367822022I782I0.34
COADchr11096312153'UTRrs1865134470.09
COADchr1109627188Frame_Shift_DelNAP300Lfs*630.43
COADchr1109628150Missense_MutationNAA437E0.43
COADchr1109630246Missense_MutationNAQ720R0.38
COADchr1109629912Missense_MutationNAR714H0.26
COADchr1109628261Missense_MutationNAT474M0.28
COADchr1109627188Frame_Shift_DelNAP300Lfs*630.14
COADchr1109627873SilentnovelV404V0.1
COADchr1109625654Splice_Regionrs7702804810.26
COADchr1109628204Missense_Mutationrs751131036T455M0.31
COADchr1109626220Silentrs763135190S192S0.42
COADchr1109628748Missense_Mutationrs774595273V559I0.61
COADchr1109621082Frame_Shift_DelnovelA25Rfs*1620.31
COADchr1109625384Missense_MutationnovelP112L0.06
COADchr1109630271SilentNAI728I0.36
COADchr1109625752Missense_MutationNAR159W0.21
COADchr1109627791Missense_Mutationrs747822677R377H0.23
COADchr1109628709Missense_MutationNAR546C0.24
COADchr1109628778Missense_MutationNAR569C0.21
DLBCchr1109628406Missense_MutationnovelY494N0.43
DLBCchr1109626403SilentnovelT223T0.31
ESCAchr11096208205'UTRnovel0.24
ESCAchr1109621195Missense_MutationnovelG61D0.43
ESCAchr1109629889Frame_Shift_DelnovelN706Kfs*710.24
GBMchr11096202195'Flanknovel0.1
GBMchr1109629486Missense_Mutationrs756745194R674C0.03
GBMchr1109621039Missense_MutationnovelF9C0.46
GBMchr11096201655'Flanknovel0.19
HNSCchr11096202055'Flanknovel0.43
HNSCchr1109627793SilentnovelR378R0.26
HNSCchr1109625709Silentrs139217835P144P0.31
KICHchr1109626158Splice_SitenovelX172_splice0.48
KIRCchr1109627443Missense_MutationnovelE346V0.45
KIRPchr1109628194Missense_MutationNAR452G0.48
KIRPchr1109625674Missense_Mutationrs781032788R133C0.06
LGGchr1109628209Missense_Mutationrs373128067R457W0.37
LGGchr1109626176Missense_MutationNAL178V0.2
LIHCchr1109630970Missense_MutationnovelY820N0.25
LIHCchr1109628426Silentrs772949801S500S0.11
LIHCchr1109626183Missense_MutationNAR180Q0.04
LUADchr1109625678Nonsense_MutationNAS134*0.11
LUADchr1109629344Silentrs116415979S626S0.18
LUADchr1109625670Missense_MutationNAF131L0.17
LUADchr1109626338Nonsense_MutationNAE202*0.13
LUADchr1109621048Missense_MutationNAR12Q0.24
LUADchr1109630271SilentNAI728I0.34
LUADchr1109621024Missense_MutationnovelR4L0.46
LUADchr1109625420Missense_MutationNAK124M0.25
LUADchr1109628135Missense_MutationnovelR432L0.25
LUSCchr1109625364SilentnovelA105A0.18
LUSCchr1109625686Missense_MutationnovelE137K0.17
LUSCchr1109626340Missense_MutationnovelE202D0.23
LUSCchr1109630327Missense_MutationnovelN747S0.31
LUSCchr1109627481Missense_Mutationrs553822688V359I0.17
OVchr1109626335Missense_MutationNAG201C0.65
OVchr11096202185'Flanknovel0.07
OVchr1109626343SilentnovelG203G0.11
OVchr1109628125Missense_MutationNAH429Y0.41
PAADchr1109630337Silentrs368213563P750P0.19
PRADchr1109629140Missense_MutationNAN589D0.36
READchr1109628714Silentrs777419165S547S0.39
SARCchr1109631002SilentnovelI830I0.31
SARCchr11096208775'UTRnovel0.15
SKCMchr1109621016Translation_Start_SiteNAM1?0.26
SKCMchr1109627897SilentnovelI412I0.36
SKCMchr1109621104SilentNAL31L0.26
SKCMchr1109625733SilentNAP152P0.2
SKCMchr1109630332SilentnovelL749L0.55
SKCMchr1109630367SilentnovelS760S0.41
SKCMchr1109625359Missense_MutationnovelP104S0.46
SKCMchr1109625360Missense_MutationNAP104L0.48
SKCMchr1109627180Missense_MutationNAP296S0.41
SKCMchr1109629394Missense_MutationnovelP643L0.24
SKCMchr1109621037SilentNAL8L0.17
SKCMchr1109628105Missense_MutationNAS422L0.34
SKCMchr1109628425Missense_MutationnovelS500F0.11
SKCMchr1109628426Silentrs772949801S500S0.11
SKCMchr11096202375'Flankrs3766451400.7
SKCMchr1109621037SilentNAL8L0.32
SKCMchr1109628175Silentrs562274293I445I0.17
SKCMchr1109625382SilentNAF111F0.22
SKCMchr1109625343SilentnovelA98A0.36
SKCMchr1109629223SilentnovelL616L0.25
SKCMchr1109625698Missense_MutationNAR141C0.13
SKCMchr1109627453SilentNAY349Y0.2
SKCMchr1109626199SilentNAF185F0.31
SKCMchr1109630975SilentnovelT821T0.21
SKCMchr1109626400SilentNAV222V0.18
SKCMchr1109621023Missense_MutationNAR4C0.87
STADchr1109631028Missense_MutationNAR839H0.22
STADchr1109628706Missense_MutationNAG545R0.24
STADchr1109625622Intronnovel0.24
STADchr1109631024Missense_MutationNAI838V0.09
STADchr1109627860Missense_MutationnovelA400V0.22
STADchr1109629345Missense_MutationNAV627M0.1
STADchr1109628210Missense_Mutationrs754312171R457Q0.23
STADchr1109625395Missense_Mutationrs751988000R116C0.17
STADchr1109625363Frame_Shift_DelnovelC107Afs*800.22
STADchr1109626182Missense_Mutationrs765794204R180W0.31
STADchr1109627188Frame_Shift_DelNAP300Lfs*630.39
STADchr1109628739Missense_Mutationrs116156816R556C0.22
STADchr1109625395Missense_Mutationrs751988000R116C0.28
STADchr1109626768Missense_MutationnovelR246W0.06
STADchr1109629442Missense_MutationnovelY659C0.11
STADchr1109629912Missense_MutationNAR714H0.23
STADchr1109629406Missense_Mutationrs376516473A647V0.28
THCAchr1109629212Nonsense_MutationnovelE613*0.2
THCAchr1109628085Splice_Regionrs780496887V415V0.07
THCAchr1109628141Missense_MutationNAI434T0.17
UCECchr1109625614Intronnovel0.21
UCECchr1109625358SilentnovelG103G0.28
UCECchr1109625396Missense_Mutationrs749976113R116H0.34
UCECchr1109628429SilentnovelV501V0.11
UCECchr1109625394SilentnovelL115L0.52
UCECchr1109631077Silentrs373514741T855T0.39
UCECchr11096319003'UTRnovel0.48
UCECchr1109625709Silentrs139217835P144P0.2
UCECchr1109628651Missense_MutationNAM526I0.2
UCECchr11096313253'UTRnovel0.18
UCECchr1109626354Missense_MutationNAR207Q0.52
UCECchr1109627508Missense_MutationNAN368D0.44
UCECchr1109630778SilentnovelS805S0.33
UCECchr1109627312Missense_MutationNAE340K0.25
UCECchr11096312053'UTRnovel0.08
UCECchr1109627852SilentnovelE397E0.29
UCECchr11096320073'UTRrs7616318430.51
UCECchr11096200665'Flanknovel0.38
UCECchr1109626724Splice_SitenovelX232_splice0.27
UCECchr11096317863'UTRnovel0.27
UCECchr1109628713Missense_Mutationrs772196474S547L0.38
UCECchr1109629911Missense_MutationNAR714C0.4
UCECchr1109630349SilentnovelS754S0.38
UCECchr1109628759Silentrs201301109R562R0.33
UCECchr1109630278Missense_MutationNAA731T0.43
UCECchr1109628709Missense_MutationNAR546C0.27
UCECchr1109627265Missense_Mutationrs749468757R324H0.33
UCECchr1109631044SilentnovelY844Y0.38
UCECchr1109628396Missense_MutationnovelF490L0.67
UCECchr1109628276Missense_MutationNAA479V0.08
UCECchr1109626352Missense_MutationNAD206E0.35
UCECchr1109629486Missense_Mutationrs756745194R674C0.1
UCECchr1109627188Frame_Shift_DelNAP300Lfs*630.33
UCECchr1109629324Splice_Regionnovel0.53
UCECchr11096202515'Flanknovel0.3
UCECchr1109625319Frame_Shift_DelnovelA92Pfs*950.32
UCECchr1109625392SilentnovelL115L0.5
UCECchr1109626893Silentrs778185309P287P0.37
UCECchr1109631043Missense_MutationNAY844C0.32
UCECchr1109627859Missense_MutationNAA400T0.38
UCECchr1109625355Silentrs775613960P102P0.3
UCECchr11096201205'Flankrs5549313280.55
UCECchr11096207615'UTRnovel0.07
UCECchr11096318603'UTRnovel0.45
UCECchr1109628212Nonsense_MutationnovelE458*0.39
UCECchr1109629167Missense_MutationnovelF598L0.15
UCECchr1109630337Silentrs368213563P750P0.2
UCECchr1109626874Missense_MutationnovelR281Q0.49
UCECchr1109629117Missense_MutationnovelY581C0.35
UCECchr11096201175'Flanknovel0.35
UCECchr11096209785'UTRnovel0.14
UCECchr1109627177Frame_Shift_InsnovelV297Gfs*120.41
UCECchr1109628775Missense_MutationnovelV568M0.11
UCECchr1109631029Silentrs768281624R839R0.35
UCECchr1109631121Missense_MutationnovelA870V0.4
UCECchr11096320073'UTRrs7616318430.32
UCSchr1109621018Missense_MutationnovelR2I0.5

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BRCADEL0.24355.7821e-10
CESCDEL0.09490.01281
COADDEL0.22170.00038973
DLBCDEL0.10420.0017831
LUADDEL0.23642.5961e-13
MESODEL0.37935.9874e-12
READDEL0.27880.013822
SKCMDEL0.17989.7877e-07
STADDEL0.16330.0040659
TGCTAMP0.18670.088103

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

STAD0.035

Kaplan-Meier Survival Analysis

SARC0.00034

Kaplan-Meier Survival Analysis

PAAD0.004

Kaplan-Meier Survival Analysis

READ0.028

Kaplan-Meier Survival Analysis

UCEC0.001

Kaplan-Meier Survival Analysis

LIHC0.011

Kaplan-Meier Survival Analysis

THCA0.027

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000116337 (Gene tree)
Gene ID
271
Gene Symbol
AMPD2
Alias
SPG63
Full Name
adenosine monophosphate deaminase 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
15,952 bases
Position
chr1:109,616,104-109,632,055
Accession
469
RBP type
non-canonical RBP
Summary
The protein encoded by this gene is important in purine metabolism by converting AMP to IMP. The encoded protein, which acts as a homotetramer, is one of three AMP deaminases found in mammals. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000528958AMPD2-220714--- (aa)--
ENST00000527846AMPD2-216585-ENSP00000431904195 (aa)-H0YCL9
ENST00000529299AMPD2-221583--- (aa)--
ENST00000467071AMPD2-207556--- (aa)--
ENST00000531203AMPD2-222575-ENSP0000043197587 (aa)-E9PIJ1
ENST00000369840AMPD2-2043130-ENSP00000358855861 (aa)-H0Y360
ENST00000469039AMPD2-208513-ENSP000004363031 (aa)-UPI0000055EF8
ENST00000476688AMPD2-2101111-ENSP00000437025231 (aa)-H0YF16
ENST00000526301AMPD2-2152354--- (aa)--
ENST00000534144AMPD2-226544--- (aa)--
ENST00000459643AMPD2-206550--- (aa)--
ENST00000531734AMPD2-223572-ENSP00000433739103 (aa)-E9PJF6
ENST00000474459AMPD2-209814-ENSP000004323441 (aa)-UPI0000055EF8
ENST00000532851AMPD2-224865--- (aa)--
ENST00000393688AMPD2-2053217-ENSP00000377292760 (aa)-Q01433
ENST00000528270AMPD2-217588-ENSP0000043489183 (aa)-H0YE32
ENST00000486282AMPD2-212582--- (aa)--
ENST00000256578AMPD2-2013899-ENSP00000256578879 (aa)-Q01433
ENST00000528667AMPD2-2193134-ENSP00000436541879 (aa)-Q01433
ENST00000524975AMPD2-213678--- (aa)--
ENST00000528454AMPD2-2182728-ENSP00000437164761 (aa)-Q01433
ENST00000533132AMPD2-225717--- (aa)--
ENST00000525415AMPD2-214580--- (aa)--
ENST00000479919AMPD2-211690--- (aa)--
ENST00000358729AMPD2-2032838XM_024446431ENSP00000351573804 (aa)XP_024302199Q01433
ENST00000342115AMPD2-2023728-ENSP00000345498798 (aa)-Q01433
Gene Model
Click here to download ENSG00000116337's gene model file
Pathways
Pathway IDPathway NameSource
hsa00230Purine metabolismKEGG
hsa01100Metabolic pathwaysKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000116337's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000116337AMPD28953.086YML035CAMD17652.648Saccharomyces_cerevisiae
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003876AMP deaminase activity21873635.IBAFunction
GO:0003876AMP deaminase activity23911318.IGIFunction
GO:0003876AMP deaminase activity8764830.NASFunction
GO:0005515protein binding21044950.25416956.IPIFunction
GO:0005829cytosol21873635.IBAComponent
GO:0005829cytosol-IDAComponent
GO:0005829cytosol-TASComponent
GO:0006188IMP biosynthetic process21873635.IBAProcess
GO:0006188IMP biosynthetic process23911318.IGIProcess
GO:0032264IMP salvage-IEAProcess
GO:0043101purine-containing compound salvage-TASProcess
GO:0046033AMP metabolic process21873635.IBAProcess
GO:0046872metal ion binding-IEAFunction
GO:0052652cyclic purine nucleotide metabolic process23911318.IMPProcess
GO:0097009energy homeostasis23911318.IGIProcess
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