EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr2189468559SilentNAL571L0.06
BLCAchr2189470096Missense_MutationnovelE614K0.34
BLCAchr2189470128Missense_MutationNAI624M0.34
BLCAchr2189466558Nonsense_MutationnovelI474_L475ins*0.08
BRCAchr2189467579Missense_MutationNAI520T0.66
BRCAchr2189462504Missense_Mutationrs147809896G267S0.15
BRCAchr2189467511Silentrs754785406H497H0.05
BRCAchr2189458770Nonsense_MutationNAS196*0.39
BRCAchr2189451886Missense_MutationnovelE122K0.17
BRCAchr2189467583SilentnovelV521V0.25
BRCAchr2189475358Missense_Mutationrs146243526E812K0.17
BRCAchr2189450688Intronnovel0.28
CESCchr2189463940Missense_MutationNAQ364H0.25
CESCchr2189449400Intronnovel0.46
CESCchr2189465243SilentNAK426K0.27
CESCchr21894414415'UTRnovel0.17
CESCchr2189459391Missense_MutationnovelD249H0.25
COADchr2189468561Missense_MutationNAS572N0.14
COADchr2189467552Missense_MutationnovelS511Y0.33
COADchr2189470099Missense_MutationnovelP615S0.27
COADchr2189467552Missense_MutationnovelS511F0.36
COADchr21894755013'UTRnovel0.4
COADchr2189463916SilentnovelG356G0.33
COADchr2189450863Intronnovel0.45
COADchr2189450864Intronnovel0.26
COADchr2189462533Silentrs150976700R276R0.32
COADchr2189450864Intronnovel0.31
COADchr2189450801Intronnovel0.13
COADchr2189470150Nonsense_MutationnovelG632*0.08
COADchr2189450863Intronnovel0.39
COADchr2189475380Missense_MutationnovelF819C0.09
COADchr2189467632Nonsense_MutationNAR538*0.32
COADchr2189475366SilentNAK814K0.36
ESCAchr2189475354Missense_MutationnovelK810N0.11
GBMchr2189448474Missense_MutationnovelT61I0.45
GBMchr2189467538Missense_MutationnovelF506L0.58
GBMchr2189467542Missense_Mutationrs371434035E508K0.13
KIRCchr2189459339SilentNAR231R0.13
KIRCchr2189465196Frame_Shift_InsnovelK411Mfs*200.05
KIRCchr2189475379Nonsense_MutationnovelF819delinsYKHY*MFLNSNFLI0.07
LGGchr2189448397SilentNAS35S0.39
LGGchr2189475398Missense_MutationnovelS825N0.25
LGGchr2189466576In_Frame_InsnovelI481delinsML0.11
LGGchr2189466578Missense_MutationnovelI481M0.11
LUADchr2189463868Missense_MutationnovelL340F0.15
LUADchr2189450959SilentNAI91I0.33
LUADchr2189465188Missense_MutationnovelR408L0.12
LUADchr2189465189SilentnovelR408R0.12
LUADchr2189458855Missense_MutationnovelD224E0.18
LUADchr2189458856Missense_MutationnovelG225C0.17
LUADchr2189450792Intronnovel0.5
LUADchr2189470853Missense_MutationnovelE675G0.15
LUADchr2189475348Frame_Shift_DelnovelL808Ffs*90.3
LUADchr2189475344Missense_MutationnovelQ807R0.42
LUADchr2189469399SilentNAE593E0.23
LUADchr2189470121Frame_Shift_InsnovelI624Yfs*180.22
LUADchr2189474774Missense_MutationnovelV752L0.32
LUSCchr2189451802Splice_Regionnovel0.11
LUSCchr2189466515SilentNAT460T0.27
LUSCchr2189459339SilentNAR231R0.14
LUSCchr2189470140Missense_MutationnovelK628N0.24
LUSCchr2189466537Missense_MutationNAG468S0.11
LUSCchr2189475398Missense_MutationnovelS825I0.08
LUSCchr2189475400In_Frame_InsnovelW826delinsFR0.08
LUSCchr2189470857Missense_MutationNAK676N0.24
LUSCchr2189475301Missense_MutationNAQ793E0.84
MESOchr2189459392Missense_Mutationrs779064956D249G0.26
OVchr2189470140Frame_Shift_InsnovelV629Wfs*340.04
OVchr2189474748Missense_MutationNAS743C0.23
OVchr2189455378SilentnovelA144A0.21
OVchr2189462532Missense_Mutationrs148423434R276H0.18
PCPGchr2189474731SilentnovelP737P0.1
PRADchr2189450942Missense_MutationnovelD86Y0.27
READchr2189458865Missense_MutationNAR228C0.15
READchr2189448467SilentNAL59L0.14
READchr2189462503Silentrs777081441G266G0.33
READchr2189450864Intronnovel0.26
SARCchr2189462605Frame_Shift_DelnovelA301Dfs*90.52
SKCMchr2189463938Nonsense_MutationNAQ364*0.43
SKCMchr2189470091Missense_MutationNAP612L0.23
SKCMchr2189458865Missense_MutationNAR228C0.33
SKCMchr2189441498SilentnovelV2V0.5
SKCMchr2189462565Missense_MutationNAP287L0.29
SKCMchr2189463712Missense_Mutationrs144965982R319Q0.32
SKCMchr2189475361Missense_MutationNAE813K0.15
SKCMchr2189475351SilentnovelS809S0.26
SKCMchr2189470144Nonsense_MutationNAQ630*0.31
SKCMchr2189458865Missense_MutationNAR228C0.3
SKCMchr2189462563Silentrs375185814L286L0.1
SKCMchr2189457333Missense_Mutationrs748227202R174Q0.55
SKCMchr2189474187Missense_MutationNAL684Q0.33
SKCMchr2189459416Missense_MutationNAS257L0.19
SKCMchr2189450820Intronnovel0.23
SKCMchr2189467540Missense_MutationNAS507F0.42
STADchr2189463696Missense_MutationnovelI314V0.17
STADchr2189455334Missense_MutationnovelV130F0.08
STADchr21894754513'UTRnovel0.46
STADchr21894754523'UTRnovel0.31
STADchr2189462531Missense_MutationnovelR276C0.26
STADchr2189455360SilentNAS138S0.18
STADchr2189465248Missense_MutationNAT428I0.12
THCAchr21894754653'UTRnovel0.11
THCAchr2189466577Frame_Shift_InsnovelI481Mfs*130.04
UCECchr2189466459Frame_Shift_InsnovelD443Rfs*100.04
UCECchr21894754723'UTRnovel0.38
UCECchr2189450837Intronnovel0.39
UCECchr2189449416Intronnovel0.25
UCECchr2189463704SilentnovelI316I0.45
UCECchr2189475251Missense_MutationnovelE776G0.2
UCECchr2189462531Missense_MutationnovelR276C0.32
UCECchr2189474752SilentNAA744A0.59
UCECchr2189465200Missense_MutationNAE412G0.33
UCECchr2189450907Missense_MutationNAY74C0.24
UCECchr2189475358Missense_Mutationrs146243526E812K0.32
UCECchr2189448503SilentnovelL71L0.17
UCECchr21894754873'UTRnovel0.14
UCECchr2189441557Missense_MutationnovelA22V0.13
UCECchr2189462533Silentrs150976700R276R0.13
UCECchr2189450855Intronnovel0.4
UCECchr2189450910Missense_MutationnovelS75F0.12
UCECchr2189465134Missense_MutationnovelL390R0.17
UCECchr2189463700Missense_MutationnovelI315R0.46
UCECchr2189463898SilentnovelV350V0.6
UCECchr2189474204Missense_Mutationrs768641297L690I0.39
UCECchr2189462508Missense_Mutationrs528766591R268H0.19
UCECchr2189449406Intronnovel0.5
UCECchr2189450864Intronnovel0.45
UCECchr2189475268Missense_MutationnovelS782A0.34
UCECchr2189469396SilentNAS592S0.24
UCECchr2189441564SilentnovelF24F0.29
UCECchr2189467552Missense_MutationnovelS511Y0.4
UCECchr21894755283'UTRnovel0.13
UCECchr2189465228SilentnovelL421L0.43
UCECchr2189449447Intronnovel0.57
UCECchr2189468519Missense_MutationnovelG558A0.41
UCECchr2189459362Missense_MutationnovelY239C0.61
UCECchr2189462561Missense_MutationnovelL286I0.25
UCECchr2189468539Missense_MutationNAL565I0.2
UCECchr2189459362Missense_MutationnovelY239C0.37
UCECchr2189465189SilentnovelR408R0.51
UCECchr2189465202Missense_MutationnovelT413A0.3
UCECchr2189468506Missense_MutationnovelK554E0.27
UCECchr2189450851Intronnovel0.1
UCECchr2189474781Nonsense_MutationnovelS754*0.18
UCECchr2189449290Intronnovel0.24
UCECchr2189450864Intronnovel0.28
UCECchr21894754843'UTRnovel0.57
UCECchr2189450864Intronnovel0.09
UCECchr2189466446SilentNAI437I0.35
UCECchr2189474789SilentnovelL757L0.21
UCECchr2189467585Missense_MutationNAT522I0.38
UCECchr2189468539Missense_MutationNAL565I0.22
UCECchr21894754213'UTRnovel0.18
UCECchr2189459365Missense_MutationnovelT240M0.25
UCECchr2189455384SilentnovelE146E0.33

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CESCAMP0.13220.012962
PAADAMP0.06520.1091
PAADDEL0.03260.2014

Survival Analysis
CancerP-value Q-value
KIRC0.00066

Kaplan-Meier Survival Analysis

MESO0.0022

Kaplan-Meier Survival Analysis

ACC0.0001

Kaplan-Meier Survival Analysis

SKCM0.023

Kaplan-Meier Survival Analysis

KIRP0.00023

Kaplan-Meier Survival Analysis

PAAD0.016

Kaplan-Meier Survival Analysis

BLCA0.049

Kaplan-Meier Survival Analysis

LIHC0.0001

Kaplan-Meier Survival Analysis

LUAD0.017

Kaplan-Meier Survival Analysis

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000115368 (Gene tree)
Gene ID
84128
Gene Symbol
WDR75
Alias
FLJ12519|NET16|UTP17
Full Name
WD repeat domain 75
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
34,133 bases
Position
chr2:189,441,433-189,475,565
Accession
25725
RBP type
non-canonical RBP
Summary
(WD Repeat Domain 75) is a Protein Coding gene. Among its related pathways are rRNA processing in the nucleus and cytosol and Gene Expression. An important paralog of this gene is TEP1.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000498365WDR75-206677--- (aa)--
ENST00000472286WDR75-204706--- (aa)--
ENST00000436347WDR75-2032703-ENSP0000041422689 (aa)-F8WE20
ENST00000631047WDR75-207270-ENSP0000048683189 (aa)-F8WE20
ENST00000427960WDR75-2024297-ENSP0000040072897 (aa)-F8WC81
ENST00000475596WDR75-205552--- (aa)--
ENST00000314761WDR75-2012701XM_024453168ENSP00000314193830 (aa)XP_024308936Q8IWA0
Gene Model
Click here to download ENSG00000115368's gene model file
Pathways
Pathway IDPathway NameSource
hsa03008Ribosome biogenesis in eukaryotesKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000115368Iron1E-1125352340
ENSG00000115368Transferrin1E-1125352340
ENSG00000115368Ferritins8E-1925352340
ENSG00000115368Iron8E-1925352340
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000115368's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000115368WDR759984.903ENSMUSG00000025995Wdr759984.903Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005654nucleoplasm-TASComponent
GO:0005730nucleolus17699751.IDAComponent
GO:0006364rRNA processing-TASProcess
GO:0045943positive regulation of transcription by RNA polymerase I17699751.IMPProcess
GO:2000234positive regulation of rRNA processing17699751.IMPProcess
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