EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
22842912Overexpression of the structural maintenance of chromosome 4 protein is associated with tumor de-differentiation, advanced stage and vascular invasion of primary liver cancer.Oncol Rep2012 OctZhou Bdoi: 10.3892/or.2012.1929

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr3160431146Missense_Mutationrs750051763E1019Q0.24
ACCchr3160431049Missense_MutationnovelI986M0.32
ACCchr3160430743Missense_MutationnovelE980D0.04
BLCAchr3160420766SilentnovelK628K0.16
BLCAchr3160404785Intronnovel0.28
BLCAchr3160428857Missense_MutationNAD904H0.07
BLCAchr3160432361Missense_MutationNAD1126H0.2
BLCAchr3160426100Missense_MutationnovelL835F0.07
BLCAchr3160423448Missense_Mutationrs754076886M681I0.38
BLCAchr3160420770Missense_MutationNAD630H0.11
BLCAchr3160432361Missense_MutationNAD1126H0.17
BLCAchr3160433808Frame_Shift_Delnovel*/X1289*/X0.19
BLCAchr3160426092Missense_MutationnovelE833K0.07
BLCAchr3160419403Missense_MutationNAK573E0.3
BLCAchr3160419427Nonsense_MutationNAQ581*0.07
BLCAchr3160404337Missense_MutationnovelD174N0.19
BLCAchr3160404748Intronnovel0.08
BLCAchr3160402860Frame_Shift_InsnovelD169Lfs*330.12
BLCAchr3160431062Missense_Mutationrs747478933R991C0.25
BLCAchr3160401953Missense_Mutationrs771029178E60K0.24
BLCAchr3160431146Missense_Mutationrs750051763E1019Q0.07
BLCAchr3160426075Missense_MutationnovelR827L0.07
BLCAchr3160431119Missense_MutationnovelD1010H0.53
BLCAchr3160402855Missense_MutationnovelK166N0.06
BLCAchr3160400867Missense_MutationnovelR14T0.36
BLCAchr3160401916Splice_RegionnovelE47E0.25
BRCAchr3160404823IntronNA0.33
BRCAchr3160428873Missense_MutationNAI909R0.17
BRCAchr3160428841SilentNAK898K0.34
BRCAchr3160404458Missense_Mutationrs753147258R214Q0.24
BRCAchr3160423488Missense_Mutationrs748833024D695H0.27
BRCAchr3160431152Frame_Shift_DelNAI1021Rfs*60.2
BRCAchr3160414500Nonsense_MutationNAQ419*0.23
BRCAchr3160420862Missense_MutationNAR660S0.14
BRCAchr3160413602SilentNAK370K0.31
BRCAchr3160431186Missense_MutationnovelI1032K0.05
BRCAchr3160401935Missense_MutationNAD54H0.39
CESCchr3160419503Frame_Shift_DelNAK608Nfs*150.44
CESCchr31604338793'UTRnovel0.24
CESCchr3160402061Missense_MutationnovelA96S0.16
CESCchr31603996565'Flanknovel0.49
CESCchr3160423593Missense_MutationnovelQ730E0.15
CESCchr3160431781Missense_MutationNAE1085K0.2
CESCchr3160417887SilentNAL534L0.4
CESCchr3160424942Missense_MutationNAE801K0.12
CESCchr3160433171Missense_MutationNAD1226H0.37
CESCchr3160416326Missense_MutationnovelE450Q0.28
CESCchr3160404630Intronnovel0.08
CESCchr3160428857Missense_MutationNAD904N0.23
CESCchr3160416248Splice_Regionnovel0.15
CESCchr31604338683'UTRnovel0.46
CHOLchr3160414258Intronnovel0.45
COADchr3160412551Intronnovel0.33
COADchr3160404457Nonsense_Mutationrs368979205R214*0.4
COADchr3160430630Missense_MutationNAR943C0.34
COADchr31604339313'UTRnovel0.1
COADchr3160404775Intronnovel0.1
COADchr3160402679Missense_MutationnovelF108V0.3
COADchr3160423482Missense_MutationnovelL693V0.26
COADchr3160412551Intronnovel0.24
COADchr3160412049Missense_MutationNAR273G0.4
COADchr3160404645Intronrs7587662500.25
COADchr3160412577Intronnovel0.11
COADchr3160401926Nonsense_MutationnovelE51*0.46
COADchr3160420740Missense_MutationnovelG620W0.33
COADchr3160417771Missense_Mutationrs543973379R496C0.2
COADchr3160423519Missense_Mutationrs776113181R705H0.26
COADchr3160424867Missense_MutationNAV776I0.27
COADchr3160402673Splice_Regionnovel0.12
COADchr3160402068Missense_MutationNAE98G0.43
COADchr3160416365Missense_MutationnovelV463I0.08
COADchr3160417819Missense_Mutationrs779745638R512C0.25
COADchr3160420762Frame_Shift_DelnovelK628Nfs*230.11
COADchr3160417727Missense_Mutationrs756108826R481Q0.38
COADchr31604339123'UTRnovel0.15
COADchr3160424961Missense_MutationNAL807S0.32
COADchr3160433696Nonsense_Mutationrs753471840R1252*0.32
COADchr3160423518Missense_Mutationrs760971978R705C0.2
COADchr3160416372Frame_Shift_InsnovelD465Efs*320.12
COADchr3160413490Missense_Mutationrs779373182R333Q0.16
COADchr3160404470Missense_MutationnovelI218T0.22
COADchr3160424975Nonsense_MutationNAR812*0.35
DLBCchr3160412374Missense_MutationNAE301K0.38
ESCAchr3160402854Splice_SitenovelX166_splice0.2
ESCAchr3160431815Missense_MutationnovelY1096C0.77
ESCAchr3160420800SilentnovelL640L0.34
ESCAchr3160417939Missense_MutationnovelE552Q0.12
ESCAchr31603994655'Flanknovel0.08
GBMchr3160401966Missense_MutationnovelS64N0.14
GBMchr3160404488Missense_MutationnovelR224I0.14
GBMchr3160423518Missense_Mutationrs760971978R705C0.33
GBMchr31604339003'UTRnovel0.29
HNSCchr3160431079Missense_MutationnovelE996D0.12
HNSCchr3160419539Missense_MutationnovelR618I0.09
HNSCchr3160431808Missense_Mutationrs11548868A1094T0.63
HNSCchr3160417782Missense_MutationnovelM499I0.2
HNSCchr3160419503Frame_Shift_DelNAK608Nfs*150.26
HNSCchr3160432457Missense_MutationnovelD1158N0.07
HNSCchr3160432374Frame_Shift_DelnovelR1131Gfs*110.36
HNSCchr3160423565Missense_MutationnovelN720K0.12
HNSCchr3160402841Missense_MutationnovelV162F0.17
KIRCchr3160433665Frame_Shift_DelnovelN1243Mfs*50.2
KIRCchr3160432432Nonsense_MutationnovelY1150Lfs*40.06
KIRCchr3160413470Splice_Regionnovel0.42
LAMLchr3160426119Missense_MutationnovelL842F0.03
LGGchr3160404338Missense_MutationNAD174A0.24
LGGchr3160431666SilentnovelP1046P0.44
LGGchr3160423787Missense_MutationNAV758L0.2
LGGchr3160431063Missense_Mutationrs755432637R991H0.41
LGGchr3160431711Missense_MutationnovelE1061D0.07
LGGchr3160419511Missense_MutationNAS609T0.38
LIHCchr3160423566Missense_MutationNAL721V0.26
LIHCchr3160430617SilentnovelQ938Q0.36
LIHCchr3160430626SilentnovelV941V0.39
LIHCchr3160416326Nonsense_MutationNAE450*0.38
LUADchr3160431190In_Frame_InsnovelK1033_Y1034insAFKFTN0.11
LUADchr3160412386Missense_MutationnovelA305T0.44
LUADchr3160416350Missense_MutationnovelK458E0.06
LUADchr3160417877Missense_MutationNAS531C0.22
LUADchr3160412042Frame_Shift_DelnovelL270Ffs*80.17
LUADchr3160424935SilentnovelV798V0.17
LUADchr3160416372In_Frame_InsnovelD465delinsEHTSLC0.12
LUADchr3160419452Missense_MutationnovelS589L0.33
LUADchr3160416292SilentnovelI438I0.18
LUADchr3160428808Missense_MutationnovelL887F0.08
LUADchr3160419380Missense_MutationNAL565H0.18
LUADchr3160412047Missense_Mutationrs183816398R272Q0.09
LUADchr3160402706Missense_MutationNAS117C0.27
LUADchr3160424870Missense_MutationNAN777Y0.16
LUADchr3160433153Missense_MutationNAE1220K0.14
LUADchr3160428855Missense_MutationNAQ903L0.43
LUADchr3160416372In_Frame_InsnovelD465delinsEHTS0.07
LUADchr3160431781Missense_MutationNAE1085K0.06
LUADchr3160411920Missense_MutationnovelG230C0.22
LUADchr3160412413Missense_MutationNAE314K0.73
LUADchr3160402725Missense_Mutationrs771547168I123T0.13
LUADchr3160420860Missense_MutationnovelR660G0.25
LUSCchr3160414471Missense_MutationnovelS409N0.49
LUSCchr3160430725SilentnovelK974K0.23
LUSCchr3160428865SilentnovelL906L0.13
LUSCchr3160431673Missense_MutationnovelD1049H0.1
LUSCchr3160433032SilentnovelR1179R0.21
LUSCchr3160400849Missense_MutationNAP8L0.26
LUSCchr3160423832Missense_MutationnovelE773K0.22
LUSCchr3160402001Missense_MutationnovelE76Q0.09
LUSCchr3160404673IntronNA0.17
LUSCchr3160431761Missense_MutationnovelL1078R0.07
LUSCchr3160423600Missense_MutationnovelD732V0.19
LUSCchr3160432458Missense_MutationnovelD1158G0.22
LUSCchr3160412500Intronnovel0.32
LUSCchr3160423569Missense_MutationnovelD722H0.15
LUSCchr3160433711Missense_MutationnovelE1257Q0.11
LUSCchr3160432418Missense_MutationnovelK1145E0.12
LUSCchr3160414434Missense_MutationNAD397H0.12
OVchr3160402815Missense_MutationNAK153M0.5
OVchr3160402805Missense_MutationNAD150N0.36
OVchr3160412331Missense_MutationnovelN286K0.28
OVchr3160432410Missense_MutationnovelI1142K0.07
OVchr3160401930Nonsense_MutationnovelD54*0.15
OVchr31604339873'UTRnovel0.18
OVchr3160402734Missense_MutationnovelM126K0.14
PAADchr3160431680Missense_MutationnovelP1051H0.17
READchr3160423518Missense_Mutationrs760971978R705C0.23
READchr31604338543'UTRrs7720169130.24
READchr3160420841Missense_MutationNAE653D0.35
READchr3160402764Missense_MutationnovelK136I0.53
READchr3160404457Nonsense_Mutationrs368979205R214*0.42
READchr3160431058SilentNAE989E0.34
READchr3160423438Missense_Mutationrs141584099A678V0.32
SARCchr3160417757Missense_Mutationrs747376250S491L0.3
SARCchr3160417929SilentnovelL548L0.37
SARCchr3160417930Missense_MutationnovelP549S0.35
SKCMchr3160432451Missense_MutationnovelG1156R0.25
SKCMchr3160404463Missense_MutationNAH216Y0.97
SKCMchr3160402080Missense_MutationNAG102E0.17
SKCMchr3160420880SilentNAA666A0.43
SKCMchr3160400853SilentNAS9S0.55
SKCMchr3160402683Missense_MutationNAS109F0.33
SKCMchr3160414314Intronnovel0.49
SKCMchr3160432490Missense_MutationnovelP1169S0.25
SKCMchr3160417953SilentNAK556K0.31
SKCMchr3160417954Missense_Mutationrs200043543E557K0.31
SKCMchr3160404457Nonsense_Mutationrs368979205R214*0.13
SKCMchr3160420885Missense_MutationnovelF668S0.25
SKCMchr3160433107SilentNAV1204V0.37
SKCMchr3160417929SilentnovelL548L0.38
SKCMchr3160417930Missense_MutationnovelP549A0.38
SKCMchr3160423824Missense_MutationNAE770G0.1
STADchr3160433751Missense_MutationNAN1270T0.25
STADchr3160423451Silentrs758237687T682T0.45
STADchr3160432514Missense_MutationNAS1177G0.39
STADchr3160432293Missense_MutationnovelY1103F0.31
STADchr3160432450Missense_MutationnovelL1155F0.29
STADchr3160404645Intronrs7587662500.07
STADchr3160402760Frame_Shift_InsnovelI137Nfs*40.14
STADchr3160428823SilentNAV892V0.09
STADchr3160430714Missense_MutationNAE971K0.17
STADchr3160433108Missense_MutationNAF1205V0.19
STADchr3160414505Missense_MutationnovelK420N0.32
STADchr3160402715Missense_MutationnovelS120T0.07
STADchr3160414493Missense_MutationNAK416N0.21
STADchr3160414374Missense_MutationNAN377D0.17
STADchr3160417750Missense_MutationnovelS489C0.49
STADchr3160402091Missense_MutationNAK106E0.07
STADchr3160424993SilentNAL818L0.32
STADchr3160404460Missense_MutationNAS215G0.05
STADchr3160419488Missense_MutationNAD601G0.29
STADchr3160431095Missense_MutationnovelE1002Q0.18
STADchr3160420772Silentrs745744048D630D0.13
THCAchr3160416372Frame_Shift_InsnovelD465Efs*70.07
UCECchr3160402686Missense_MutationNAC110S0.34
UCECchr3160417809SilentNAI508I0.32
UCECchr3160431683Missense_MutationNAI1052S0.36
UCECchr3160433696Nonsense_Mutationrs753471840R1252*0.23
UCECchr3160426189Missense_MutationNAA865V0.3
UCECchr3160433696Nonsense_Mutationrs753471840R1252*0.17
UCECchr31604338233'UTRnovel0.42
UCECchr3160412560Intronnovel0.29
UCECchr3160420784Silentrs776118825S634S0.41
UCECchr3160433696Nonsense_Mutationrs753471840R1252*0.45
UCECchr3160412534Intronrs1887039540.42
UCECchr3160423479Missense_MutationNAR692C0.3
UCECchr3160433696Nonsense_Mutationrs753471840R1252*0.43
UCECchr3160414165Intronnovel0.38
UCECchr3160417726Nonsense_Mutationrs752681997R481*0.42
UCECchr3160419534SilentnovelY616Y0.62
UCECchr3160423574SilentnovelQ723Q0.06
UCECchr3160431722Missense_Mutationrs753876897A1065V0.6
UCECchr3160432440Missense_MutationnovelM1152R0.29
UCECchr3160433200Frame_Shift_InsnovelE1239Mfs*100.36
UCECchr3160412525Intronnovel0.47
UCECchr3160424960Missense_MutationNAL807V0.37
UCECchr31603993845'Flanknovel0.4
UCECchr3160433696Nonsense_Mutationrs753471840R1252*0.43
UCECchr3160402706Missense_MutationNAS117C0.46
UCECchr3160402810SilentnovelE151E0.03
UCECchr3160402731Missense_MutationnovelS125Y0.4
UCECchr31603994265'Flanknovel0.29
UCECchr3160424963Missense_MutationNAR808W0.5
UCECchr3160426152Frame_Shift_DelNAK855Sfs*50.32
UCECchr3160423518Missense_Mutationrs760971978R705C0.21
UCECchr31604338573'UTRnovel0.35
UCECchr31603996655'Flanknovel0.32
UCECchr3160433691Missense_MutationnovelS1250Y0.06
UCECchr3160423798SilentNAG761G0.22
UCECchr3160428762Missense_MutationNAA872D0.25
UCECchr3160432462Silentrs142912100A1159A0.33
UCECchr3160423480Missense_Mutationrs755580882R692H0.44
UCECchr3160423581Missense_Mutationrs752582234R726G0.49
UCECchr3160433035SilentNAP1180P0.47
UCECchr3160404364Missense_MutationNAF183V0.24
UCECchr3160402793Missense_MutationnovelI146L0.23
UCECchr3160420807Missense_Mutationrs763515554Y642C0.15
UCECchr3160424972Missense_MutationNAE811K0.26
UCECchr3160428883Silentrs17289278Q912Q0.21
UCECchr3160416252Missense_MutationnovelV425A0.13
UCECchr3160433691Missense_MutationnovelS1250Y0.37
UCECchr3160404588Intronnovel0.33
UCECchr3160414313Intronnovel0.44
UCECchr3160428913Missense_MutationnovelK922N0.32
UCECchr3160432377Missense_MutationnovelR1131K0.13
UCECchr3160431031Splice_SitenovelX981_splice0.29
UCECchr3160420772Silentrs745744048D630D0.4
UCECchr3160404774Intronrs7561999810.11
UCECchr3160414105Intronnovel0.3
UCECchr3160431695Missense_Mutationrs373687438S1056L0.44
UCECchr3160433718Missense_Mutationrs780400107S1259L0.42
UCECchr31603994705'Flanknovel0.45
UCECchr3160404645Intronrs7587662500.38
UCECchr3160412025Missense_MutationnovelE265K0.26
UCECchr3160419502Frame_Shift_InsnovelS609Ifs*180.41
UCECchr3160426074Missense_Mutationrs573812800R827C0.33
UCECchr3160431123Missense_MutationnovelA1011V0.46
UCECchr3160414478Frame_Shift_InsnovelL414Tfs*90.33
UCECchr31604338533'UTRnovel0.5
UCECchr3160414517Missense_MutationnovelK424N0.4
UCECchr3160402784Missense_MutationNAS143T0.34
UCECchr3160426118SilentNAE841E0.28
UCECchr31603994545'Flanknovel0.5
UCECchr3160417809SilentNAI508I0.42
UCECchr3160419542Missense_MutationNAL619S0.44
UCECchr3160420770Missense_MutationnovelD630N0.49
UCECchr3160401952SilentnovelE59E0.35
UCECchr3160402768Missense_MutationnovelI137M0.25
UCECchr3160412474Intronnovel0.36
UCECchr3160423580SilentnovelT725T0.3
UCECchr3160426152Frame_Shift_DelNAK855Sfs*50.4
UCECchr3160433734SilentnovelG1264G0.36
UCECchr3160404364Missense_MutationNAF183V0.16
UCECchr3160423518Missense_Mutationrs760971978R705C0.17
UCECchr3160432367Missense_Mutationrs753663145R1128W0.27
UCECchr3160404473Missense_MutationnovelD219G0.31
UCECchr3160413603Missense_MutationnovelD371H0.34
UCECchr3160431037SilentnovelS982S0.39
UCECchr3160402076Missense_MutationnovelL101M0.31
UCECchr3160417907Missense_MutationnovelI541T0.39
UCECchr3160419423SilentnovelL579L0.44
UCECchr3160431062Missense_Mutationrs747478933R991C0.31
UCECchr31604338453'UTRnovel0.43
UCECchr3160404458Missense_Mutationrs753147258R214Q0.43
UCECchr3160404679Intronnovel0.31
UCECchr3160428817SilentnovelT890T0.52
UCECchr3160430696Missense_MutationnovelL965I0.23
UCECchr31604338383'UTRnovel0.36
UCECchr3160412392Missense_Mutationrs761150992E307K0.14
UCECchr3160433177Frame_Shift_DelnovelN1229Mfs*190.49
UCECchr3160420753Missense_MutationnovelA624D0.34
UCECchr3160430686Missense_MutationnovelE961D0.31
UCECchr3160431081Missense_MutationNAL997S0.27
UCECchr3160417831Missense_MutationnovelA516T0.04
UCECchr3160431722Missense_Mutationrs753876897A1065V0.28
UCECchr3160412550Intronnovel0.6
UCECchr3160414419Nonsense_MutationNAQ392*0.18
UCECchr3160419502Frame_Shift_InsnovelS609Ifs*180.44
UCECchr31603993765'Flanknovel0.41
UCECchr3160431143Missense_MutationNAL1018I0.38
UCECchr3160433718Missense_Mutationrs780400107S1259L0.42
UCECchr3160433696Nonsense_Mutationrs753471840R1252*0.5
UCECchr3160433200Missense_MutationNAF1235L0.31
UCECchr3160426152Frame_Shift_DelNAK855Sfs*50.48
UCECchr3160417757Missense_Mutationrs747376250S491L0.13
UCECchr3160433696Nonsense_Mutationrs753471840R1252*0.25
UCECchr3160414378Missense_MutationnovelK378T0.43
UCECchr31604339773'UTRnovel0.33
UCECchr3160402076Missense_MutationnovelL101M0.21
UCECchr3160417901Missense_MutationnovelA539V0.16
UCECchr3160428762Missense_MutationnovelA872V0.33
UCECchr3160414256Intronnovel0.17
UCECchr3160432515Missense_MutationnovelS1177I0.48
UCECchr3160402722Missense_MutationnovelV122G0.4
UCECchr3160404353Missense_MutationnovelP179L0.37
UCECchr3160416295Silentrs753117042I439I0.33
UCECchr3160424896SilentNAN785N0.29
UCECchr3160414141Intronnovel0.42
UCECchr3160431063Missense_Mutationrs755432637R991H0.31
UCSchr3160419487Missense_MutationNAD601H0.64
UCSchr3160402736Missense_MutationnovelL127I0.36
UCSchr3160433187Missense_MutationnovelS1231F0.46

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
KIRCDEL0.10610.11092
KIRPAMP0.31250.15981
PAADAMP0.10870.16151

Survival Analysis
CancerP-value Q-value
THYM0.027

Kaplan-Meier Survival Analysis

STAD0.039

Kaplan-Meier Survival Analysis

SARC0.0064

Kaplan-Meier Survival Analysis

MESO0.0024

Kaplan-Meier Survival Analysis

ACC0.00018

Kaplan-Meier Survival Analysis

SKCM0.0017

Kaplan-Meier Survival Analysis

PRAD0.0022

Kaplan-Meier Survival Analysis

LUSC0.02

Kaplan-Meier Survival Analysis

KIRP0.0001

Kaplan-Meier Survival Analysis

COAD0.042

Kaplan-Meier Survival Analysis

PAAD0.0001

Kaplan-Meier Survival Analysis

PCPG0.017

Kaplan-Meier Survival Analysis

READ0.037

Kaplan-Meier Survival Analysis

LAML0.037

Kaplan-Meier Survival Analysis

KICH0.0085

Kaplan-Meier Survival Analysis

UCEC0.00076

Kaplan-Meier Survival Analysis

LIHC0.00048

Kaplan-Meier Survival Analysis

LUAD0.03

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000113810 (Gene tree)
Gene ID
10051
Gene Symbol
SMC4
Alias
hCAP-C|CAP-C|SMC4L1
Full Name
structural maintenance of chromosomes 4
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
35,689 bases
Position
chr3:160,399,274-160,434,962
Accession
14013
RBP type
non-canonical RBP
Summary
This gene belongs to the 'structural maintenance of chromosomes' (SMC) gene family. Members of this gene family play a role in two changes in chromosome structure during mitotic segregation of chromosomes- chromosome condensation and sister chromatid cohesion. The protein encoded by this gene is likely a subunit of the 13S condensin complex, which is involved in chromosome condensation. A pseudogene related to this gene is located on chromosome 2. [provided by RefSeq, Jun 2016]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000487747SMC4-219637--- (aa)--
ENST00000468653SMC4-2091756--- (aa)--
ENST00000469762SMC4-2103998XM_011512312ENSP000004179641263 (aa)XP_011510614E9PD53
ENST00000490207SMC4-222821-ENSP00000420817180 (aa)-C9JJ64
ENST00000357388SMC4-2025471XM_006713459ENSP000003499611288 (aa)XP_006713522Q9NTJ3
ENST00000497203SMC4-225490--- (aa)--
ENST00000497984SMC4-227563--- (aa)--
ENST00000485867SMC4-217629-ENSP00000417612157 (aa)-C9J9E4
ENST00000493695SMC4-223457--- (aa)--
ENST00000344722SMC4-2015356XM_011512311ENSP000003413821288 (aa)XP_011510613Q9NTJ3
ENST00000472991SMC4-214582-ENSP00000417999139 (aa)-C9J578
ENST00000485645SMC4-216583-ENSP00000420644173 (aa)-C9IYK2
ENST00000486711SMC4-218621--- (aa)--
ENST00000469858SMC4-2111971-ENSP0000041843450 (aa)-F8WCB7
ENST00000488017SMC4-220592--- (aa)--
ENST00000472282SMC4-213667--- (aa)--
ENST00000494612SMC4-224622--- (aa)--
ENST00000465903SMC4-206849-ENSP00000419247170 (aa)-C9JWF0
ENST00000467468SMC4-208566-ENSP00000419360119 (aa)-C9JVD8
ENST00000462787SMC4-2045033-ENSP000004207341230 (aa)-Q9NTJ3
ENST00000470240SMC4-212724--- (aa)--
ENST00000484799SMC4-215478--- (aa)--
ENST00000497311SMC4-226708-ENSP00000418820173 (aa)-C9IYK2
ENST00000465563SMC4-205747--- (aa)--
ENST00000467263SMC4-207401--- (aa)--
ENST00000489573SMC4-2211553-ENSP00000420121423 (aa)-C9JR83
ENST00000462668SMC4-2034235--- (aa)--
Gene Model
Click here to download ENSG00000113810's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000113810's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000113810SMC49956.934FBgn0015391glu8739.886Drosophila_melanogaster
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000070mitotic sister chromatid segregation11321372.TASProcess
GO:0000796condensin complex11136719.IDAComponent
GO:0000796condensin complex11850403.TASComponent
GO:0003697single-stranded DNA binding-IEAFunction
GO:0005515protein binding17113138.17268547.26496610.30021884.IPIFunction
GO:0005524ATP binding11136719.TASFunction
GO:0005634nucleus11850403.TASComponent
GO:0005654nucleoplasm-TASComponent
GO:0005829cytosol-IDAComponent
GO:0005829cytosol-TASComponent
GO:0007076mitotic chromosome condensation11136719.IDAProcess
GO:0010032meiotic chromosome condensation-IEAProcess
GO:0016607nuclear speck-IDAComponent
GO:0045132meiotic chromosome segregation-IEAProcess
GO:0046982protein heterodimerization activity9789013.IPIFunction
GO:0051301cell division-IEAProcess
GO:0051383kinetochore organization-IEAProcess
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