EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
27475326Collapsin response mediator protein 4 isoforms (CRMP4a and CRMP4b) have opposite effects on cell proliferation, migration, and invasion in gastric cancer.BMC Cancer2016 Jul 30Guo Hdoi: 10.1186/s12885-016-2593-6.
15933812HUlip, a human homologue of unc-33-like phosphoprotein of Caenorhabditis elegans; Immunohistochemical localization in the developing human brain and patterns of expression in nervous system tumors.J Neurooncol2005 MayChoi YL-
20543870Expression profiling identifies new function of collapsin response mediator protein 4 as a metastasis-suppressor in prostate cancer.Oncogene2010 Aug 12Gao Xdoi: 10.1038/onc.2010.213
25096402Dihydropyrimidinase-like 3 facilitates malignant behavior of gastric cancer.J Exp Clin Cancer Res2014 Aug 6Kanda Mdoi: 10.1186/s13046-014-0066-9.
22805864Collapsin response mediator protein 4 expression is associated with liver metastasis and poor survival in pancreatic cancer.Ann Surg Oncol2013 DecHiroshima Ydoi: 10.1245/s10434-012-2491-3

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr51473938813'UTRnovel0.41
BLCAchr5147400707Missense_MutationnovelI365M0.35
BLCAchr5147415814Missense_Mutationrs777564671E125Q0.11
BLCAchr5147399223SilentnovelF380F0.39
BRCAchr5147397756SilentNAG457G0.36
BRCAchr5147399234Missense_Mutationrs754356799E377K0.13
BRCAchr5147424921Missense_MutationNAD28N0.1
BRCAchr5147395710SilentNAL491L0.19
BRCAchr5147400721Missense_MutationNAR361W0.16
BRCAchr5147400782SilentNAQ340Q0.26
BRCAchr5147418557Missense_Mutationrs750296589G68E0.22
BRCAchr5147415769Missense_MutationnovelD140H0.05
BRCAchr5147405727Missense_MutationNAE232K0.42
CESCchr51473909803'UTRnovel0.12
CESCchr5147453552SilentnovelI12I0.44
CESCchr5147415797Missense_MutationNAK130N0.11
CESCchr51473912743'UTRnovel0.75
CESCchr51473912743'UTRnovel0.2
CESCchr5147399135Missense_Mutationrs757343684V410I0.14
CESCchr5147418589SilentnovelT57T0.24
CESCchr51473913513'UTRnovel0.35
CESCchr5147395625Missense_Mutationrs751361322R520W0.12
CESCchr5147399187SilentnovelF392F0.3
CESCchr51473913873'UTRnovel0.19
CESCchr5147412656SilentNAL191L0.5
CESCchr51473913613'UTRnovel0.09
COADchr5147400778Missense_MutationNAA342T0.38
COADchr5147418456Missense_MutationNAT102A0.47
COADchr5147395638Frame_Shift_DelnovelA516Qfs*150.31
COADchr5147424941Missense_MutationnovelG21V0.54
COADchr5147395693Missense_MutationNAG497D0.78
COADchr5147405695SilentNAI242I0.41
COADchr5147397674Missense_Mutationrs747491194R485W0.09
COADchr51473939493'UTRnovel0.23
COADchr5147394056SilentNAS564S0.34
COADchr5147397674Missense_Mutationrs747491194R485W0.3
COADchr5147401615Missense_MutationNAA298V0.4
COADchr5147399173Missense_MutationnovelR397H0.12
COADchr5147399190SilentnovelI391I0.05
COADchr5147399123Missense_MutationNAP414S0.16
ESCAchr5147415848SilentnovelE113E0.1
ESCAchr51473937983'UTRnovel0.11
ESCAchr51473937863'UTRnovel0.09
ESCAchr5147424921Missense_MutationnovelD28H0.83
GBMchr5147415815Missense_MutationnovelR124S0.14
GBMchr5147424882SilentnovelL41L0.07
GBMchr5147415797Missense_MutationnovelK130N0.54
GBMchr5147405659SilentNAK254K0.06
HNSCchr5147418546Missense_MutationnovelV72I0.25
HNSCchr5147405629SilentnovelI264I0.18
HNSCchr5147399097SilentNAA422A0.11
HNSCchr5147418458Missense_MutationnovelT101I0.42
HNSCchr5147424946Missense_MutationnovelI19M0.11
HNSCchr5147397671Missense_MutationnovelR486G0.62
KIRCchr5147418554Missense_MutationNAG69V0.21
KIRCchr5147412639Missense_MutationNAV197A0.4
KIRPchr51473937553'UTRnovel0.43
KIRPchr5147453575Missense_MutationnovelG5C0.09
LAMLchr5147399143Missense_MutationnovelS407N0.15
LIHCchr5147400833Missense_MutationnovelS323R0.19
LIHCchr5147397727Missense_MutationnovelR467L0.52
LIHCchr5147412681Missense_MutationNAE183V0.1
LUADchr5147408744Missense_MutationNAL225Q0.14
LUADchr5147400718Missense_MutationNAM362L0.38
LUADchr5147400726Missense_MutationNAE359V0.5
LUADchr5147399177Missense_MutationnovelP396S0.05
LUADchr5147412659Missense_MutationnovelE190D0.33
LUADchr5147400721SilentNAR361R0.63
LUADchr5147401559Missense_MutationNAI317F0.59
LUADchr5147397824Missense_MutationNAE435K0.24
LUSCchr5147415797SilentnovelK130K0.26
LUSCchr5147424965Splice_SitenovelX14_splice0.59
LUSCchr5147415821Missense_MutationNAK122N0.29
LUSCchr5147413605SilentnovelS177S0.29
LUSCchr5147395638Frame_Shift_DelnovelA516Qfs*150.83
LUSCchr5147395639Missense_MutationnovelP515L0.83
LUSCchr5147424956Missense_Mutationrs374440794R16H0.21
LUSCchr5147394050Missense_MutationNAI566M0.13
LUSCchr5147397761Missense_MutationNAD456N0.72
LUSCchr5147415758Missense_MutationnovelH143Q0.16
LUSCchr51473939313'UTRnovel0.33
OVchr5147399211SilentnovelT384T0.05
OVchr5147397727Missense_Mutationrs377459296R467H0.06
OVchr5147415843Missense_MutationnovelS115N0.17
OVchr51473940123'UTRnovel0.07
OVchr5147400700Missense_MutationnovelK368Q0.1
OVchr5147400701SilentnovelD367D0.1
OVchr5147397723Nonsense_MutationnovelF468Lfs*60.16
READchr5147415746Silentrs761152983S147S0.36
SARCchr5147400833Splice_Regionrs751007269S323S0.13
SARCchr51473939493'UTRnovel0.21
SKCMchr5147418599Missense_MutationNAG54E0.37
SKCMchr5147400727Nonsense_MutationnovelE359*0.23
SKCMchr5147397737Missense_MutationNAG464R0.24
SKCMchr5147400770SilentNAG344G0.27
SKCMchr5147405671SilentNAL250L0.32
SKCMchr51473940253'UTRnovel0.22
SKCMchr5147399223SilentnovelF380F0.18
SKCMchr5147399168Missense_MutationNAG399R0.43
SKCMchr5147399101Missense_MutationNAS421F0.2
SKCMchr51473940013'UTRnovel0.18
SKCMchr5147395578SilentNAQ535Q0.4
SKCMchr5147415736Missense_MutationnovelE151K0.45
SKCMchr5147418550Silentrs761657413I70I0.33
SKCMchr5147405727Missense_MutationNAE232K0.22
SKCMchr5147408751Missense_MutationnovelH223Y0.28
SKCMchr5147395657Missense_MutationNAT509N0.46
SKCMchr5147418543Missense_MutationnovelH73Y0.3
STADchr5147395678Missense_MutationnovelP502L0.32
STADchr5147408790Missense_MutationNAT210A0.14
STADchr5147408727Splice_SiteNAX230_splice0.23
STADchr5147395696Missense_MutationNAR496M0.26
STADchr5147401614Silentrs200777055A298A0.35
STADchr5147397844Missense_Mutationrs758085369A428V0.41
STADchr5147399136Silentrs779181977L409L0.26
STADchr5147401610Missense_MutationNAA300T0.3
STADchr5147399135Missense_Mutationrs757343684V410I0.37
STADchr5147399234Missense_Mutationrs754356799E377K0.36
STADchr5147400821SilentNAQ327Q0.18
STADchr5147408736Missense_MutationNAP228T0.05
STADchr5147415807Missense_MutationNAA127V0.09
STADchr5147418611Missense_MutationNAI50S0.1
STADchr5147408776SilentNAE214E0.23
STADchr5147400760Missense_MutationnovelF348V0.4
STADchr5147401614Silentrs200777055A298A0.22
STADchr5147395638Frame_Shift_DelnovelA516Qfs*150.35
STADchr5147405611Frame_Shift_DelnovelG271Efs*30.34
STADchr5147412652Frame_Shift_DelnovelA193Pfs*250.31
STADchr5147412689Splice_SiteNAX181_splice0.19
STADchr5147405607Splice_Regionnovel0.25
THYMchr51473936703'UTRrs5471753520.39
UCECchr5147395638Silentrs540998273P515P0.49
UCECchr5147399175SilentnovelP396P0.08
UCECchr5147394074Silentrs763302616A558A0.43
UCECchr5147399164Missense_MutationNAR400I0.24
UCECchr51473939403'UTRnovel0.32
UCECchr5147394074Silentrs763302616A558A0.17
UCECchr5147395584SilentnovelL533L0.2
UCECchr5147399223SilentnovelF380F0.32
UCECchr5147401544Missense_MutationNAA322S0.36
UCECchr51473939343'UTRnovel0.26
UCECchr5147401603Missense_MutationnovelV302A0.47
UCECchr5147415836Silentrs371548122T117T0.5
UCECchr51473939083'UTRnovel0.25
UCECchr51473914213'UTRnovel0.59
UCECchr5147399116Missense_MutationnovelA416D0.55
UCECchr5147424943Missense_MutationnovelK20N0.41
UCECchr51473912243'UTRnovel0.22
UCECchr51473940123'UTRnovel0.35
UCECchr5147415791Nonsense_MutationnovelC132*0.37
UCECchr5147509510Nonsense_MutationnovelE117*0.46
UCECchr51473939753'UTRnovel0.13
UCECchr5147415807Missense_MutationNAA127D0.28
UCECchr5147405613Missense_MutationNAK270E0.35
UCECchr5147397734Frame_Shift_DelnovelA465Lfs*420.36
UCECchr5147395605Silentrs760857578P526P0.54
UCECchr5147399106Silentrs756560734I419I0.39
UCECchr5147401686SilentnovelV274V0.42
UCECchr5147412664Nonsense_MutationnovelG189*0.31
UCECchr5147395635SilentnovelA516A0.27
UCECchr51473938853'UTRnovel0.42
UCECchr5147405668Silentrs768834528Y251Y0.27
UCECchr51473913583'UTRnovel0.4
UCECchr5147405610Frame_Shift_InsnovelG271Rfs*70.36
UCECchr51473938353'UTRnovel0.49
UCECchr5147412686Splice_RegionnovelL181L0.31
UCECchr5147405611Frame_Shift_DelnovelG271Efs*30.38
UCECchr5147399136Silentrs779181977L409L0.33
UCECchr51474536765'UTRnovel0.46
UCECchr51473939443'UTRnovel0.3
UCECchr51473939693'UTRnovel0.45
UCECchr5147395663Missense_MutationnovelT507I0.37
UCECchr5147401615Missense_MutationNAA298V0.37
UCECchr5147418498Missense_MutationNAD88Y0.29
UCECchr51473939503'UTRnovel0.3
UCECchr5147395565Missense_MutationnovelL540M0.24
UCECchr5147395703Missense_Mutationrs776105614V494I0.43
UCECchr5147399141Missense_MutationnovelD408N0.48
UCECchr5147397768Missense_MutationnovelM453I0.4
UCECchr51473939393'UTRnovel0.28
UCECchr5147399173Missense_MutationnovelR397H0.23
UCECchr5147415728SilentnovelQ153Q0.17
UCECchr5147418601SilentnovelG53G0.19
UCECchr51474536345'UTRrs3679406180.3
UCECchr5147408762Missense_MutationnovelG219D0.38
UCECchr5147415851Silentrs771694171P112P0.24
UCECchr5147509736SilentnovelV41V0.25
UCECchr5147400833Splice_Regionrs751007269S323S0.42
UCECchr5147395659SilentnovelT508T0.43
UCECchr5147397673Missense_Mutationrs775844954R485Q0.23
UCECchr51473939193'UTRnovel0.43
UCECchr5147394075Missense_Mutationrs766945584A558V0.38
UCECchr5147394062SilentnovelG562G0.27
UCECchr5147397828SilentNAI433I0.15
UCECchr5147424910Missense_MutationnovelF31L0.53
UCECchr5147415724Missense_Mutationrs773851486L155F0.1
UCECchr51473914363'UTRnovel0.42
UCECchr5147397674Missense_Mutationrs747491194R485W0.43
UCECchr5147405644SilentnovelS259S0.37
UCECchr5147399223SilentnovelF380F0.27
UCECchr51474536855'UTRnovel0.32

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
KIRPAMP0.10760.069756
KIRPDEL0.04170.11554
LAMLDEL0.0891.2971e-07
LUSCDEL0.61880.002071
MESODEL0.14940.20184
PRADAMP0.02640.16448
SKCMDEL0.2972.2081e-08
THCAAMP0.03610.075436
THCADEL00.23456

Survival Analysis
CancerP-value Q-value
KIRC0.0022

Kaplan-Meier Survival Analysis

STAD0.0051

Kaplan-Meier Survival Analysis

SARC0.047

Kaplan-Meier Survival Analysis

MESO0.0015

Kaplan-Meier Survival Analysis

ACC0.0045

Kaplan-Meier Survival Analysis

UCS0.026

Kaplan-Meier Survival Analysis

KIRP0.0001

Kaplan-Meier Survival Analysis

BLCA0.00045

Kaplan-Meier Survival Analysis

LAML0.0076

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

UVM0.0035

Kaplan-Meier Survival Analysis

OV0.027

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000113657 (Gene tree)
Gene ID
1809
Gene Symbol
DPYSL3
Alias
DRP-3|ULIP|CRMP4
Full Name
dihydropyrimidinase like 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
119,453 bases
Position
chr5:147,390,808-147,510,260
Accession
3015
RBP type
non-canonical RBP
Summary
(Dihydropyrimidinase Like 3) is a Protein Coding gene. Among its related pathways are Developmental Biology and Semaphorin interactions. Gene Ontology (GO) annotations related to this gene include hydrolase activity and phosphoprotein binding. An important paralog of this gene is CRMP1.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000507309DPYSL3-204514--- (aa)--
ENST00000523458DPYSL3-209584-ENSP0000042895875 (aa)-H0YB87
ENST00000398514DPYSL3-2025309XM_011537574ENSP00000381526570 (aa)XP_011535876Q14195
ENST00000519672DPYSL3-207572--- (aa)--
ENST00000343218DPYSL3-2015476-ENSP00000343690684 (aa)-Q14195
ENST00000512722DPYSL3-206539-ENSP0000042672092 (aa)-D6RF19
ENST00000508042DPYSL3-205746--- (aa)--
ENST00000520473DPYSL3-208838-ENSP00000430267209 (aa)-H0YBT4
ENST00000504965DPYSL3-203771--- (aa)--
Gene Model
Click here to download ENSG00000113657's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000113657Audiometry, Pure-Tone9.6590774676164E-5-
ENSG00000113657Child Development Disorders, Pervasive2.3000000E-005-
ENSG00000113657Sleep1E-727992416
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000113657rs22888025147412461GMacrophage inflammatory protein 1a levels27989323[0.12-0.31] SD units decrease0.2188EFO_0008218
ENSG00000113657rs353092875147395824TAExcessive daytime sleepiness27992416[0.042-0.092] unit increase0.067EFO_0007875
ENSG00000113657rs111679905147412193?Adolescent idiopathic scoliosis30019117EFO_0005423
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000113657's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000113657DPYSL310089.130ENSG00000092964DPYSL29976.708Homo_sapiens
ENSG00000113657DPYSL310089.130ENSMUSG00000022048Dpysl29977.408Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005515protein binding21044950.IPIFunction
GO:0005615extracellular space-ISSComponent
GO:0005829cytosol-ISSComponent
GO:0005829cytosol-TASComponent
GO:0010976positive regulation of neuron projection development-ISSProcess
GO:0010977negative regulation of neuron projection development-ISSProcess
GO:0016810hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds-IEAFunction
GO:0017124SH3 domain binding-ISSFunction
GO:0030027lamellipodium-ISSComponent
GO:0030336negative regulation of cell migration-ISSProcess
GO:0030426growth cone-ISSComponent
GO:0031005filamin binding25358863.IPIFunction
GO:0031941filamentous actin-ISSComponent
GO:0035374chondroitin sulfate binding-ISSFunction
GO:0044297cell body-ISSComponent
GO:0045202synapse-IEAComponent
GO:0048666neuron development-IEAProcess
GO:0048678response to axon injury-ISSProcess
GO:0051017actin filament bundle assembly-ISSProcess
GO:0051260protein homooligomerization-ISSProcess
GO:0051491positive regulation of filopodium assembly-ISSProcess
GO:0051764actin crosslink formation-ISSProcess
GO:0070382exocytic vesicle-ISSComponent
GO:0071345cellular response to cytokine stimulus-ISSProcess
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