EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
28618931Detection of FAM172A expressed in circulating tumor cells is a feasible method to predict high-risk subgroups of colorectal cancer.Tumour Biol2017 JunCui CHdoi: 10.1177/1010428317699126.
23314443FAM172A induces S phase arrest of HepG2 cells via Notch3.Oncol Rep2013 MarFeng Zdoi: 10.3892/or.2013.2235
26676844FAM172A modulates apoptosis and proliferation of colon cancer cells via STAT1 binding to its promoter.Oncol Rep2016 MarQian Kdoi: 10.3892/or.2015.4485

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr593776166SilentnovelV367V0.15
BLCAchr594053179Missense_Mutationrs546421741P52L0.09
BLCAchr5936209593'UTRnovel0.38
BLCAchr593784380Splice_Regionnovel0.18
BLCAchr593958881Missense_MutationnovelH155Y0.36Arb2
BLCAchr5936209863'UTRnovel0.33
BLCAchr593621124Missense_Mutationrs761854218D372N0.29
BRCAchr593958847Missense_MutationNAA166V0.5Arb2
BRCAchr593881477Missense_Mutationrs200535189Y260C0.24Arb2
BRCAchr593784399Missense_Mutationrs758166608R336Q0.16Arb2
BRCAchr594074720Nonsense_MutationnovelL11Yfs*90.11
CESCchr593958956Missense_MutationnovelE130K0.41Arb2
CESCchr593881604Missense_MutationNAD218H0.63Arb2
COADchr593881576Missense_Mutationrs373351314R227Q0.21Arb2
COADchr594074667Nonsense_MutationnovelE29*0.29
COADchr593824187Silentrs763583872F289F0.41
COADchr593964515SilentNAT106T0.3
COADchr594053214Nonsense_MutationnovelI41*0.07
COADchr593784477Frame_Shift_InsnovelV310Afs*90.04Arb2
COADchr593784479Missense_MutationnovelD309E0.01Arb2
GBMchr593881493Nonsense_MutationnovelE255*0.18Arb2
GBMchr594074747Missense_MutationnovelS2Y0.58
HNSCchr593621067Nonsense_MutationnovelE391*0.16
HNSCchr593824240Missense_MutationnovelI272F0.46Arb2
HNSCchr593784400Nonsense_MutationNAR336*0.15Arb2
HNSCchr593958833Missense_MutationNAI171V0.19Arb2
KIRCchr593784483Missense_MutationnovelA308G0.29Arb2
KIRCchr594053214Nonsense_MutationnovelR40_I41ins*0.04
KIRCchr593881388Intronnovel0.38
KIRCchr593881390Intronnovel0.38
KIRPchr5936208923'UTRnovel0.24
KIRPchr593881510Frame_Shift_DelnovelN249Tfs*80.41Arb2
LGGchr594050822Nonsense_MutationnovelL73*0.47
LGGchr593964460Missense_MutationnovelP125T0.31Arb2
LIHCchr593958831SilentnovelI171I0.36
LIHCchr594053214Nonsense_MutationnovelI41*0.13
LUADchr593881539Missense_MutationNAK239N0.34Arb2
LUADchr593824230Missense_MutationnovelW275L0.21Arb2
LUADchr593776193Missense_MutationNAE358D0.27
LUADchr593958910Missense_Mutationrs758327052T145R0.27Arb2
LUADchr593621046In_Frame_DelnovelK396_T397del0.13
LUSCchr594053186Missense_MutationNAD50N0.61
LUSCchr594074697Missense_MutationNAQ19E0.15
LUSCchr593824198Missense_MutationnovelN286H0.06Arb2
MESOchr5936209483'UTRnovel0.3
MESOchr5936208243'UTRnovel0.52
OVchr593784446Frame_Shift_DelnovelT320Rfs*250.19Arb2
PRADchr593621085Missense_MutationnovelI385L0.44
PRADchr593881524SilentnovelY244Y0.3
READchr593824187Silentrs763583872F289F0.26
READchr594074695Missense_MutationnovelQ19H0.39
SKCMchr594053200Missense_MutationnovelE45V0.62
SKCMchr593881615Missense_MutationnovelQ214L0.31Arb2
SKCMchr593958968Missense_MutationnovelV126I0.36Arb2
SKCMchr593824187Silentrs763583872F289F0.3
SKCMchr593881684Missense_MutationNAG191E0.4Arb2
SKCMchr593958936SilentNAF136F0.34
STADchr594050787Missense_MutationNAN85H0.13
STADchr593881637Nonsense_MutationNAE207*0.1Arb2
STADchr593881585Missense_MutationnovelA224E0.07Arb2
STADchr593881468Splice_SitenovelX262_splice0.36
STADchr593964460Missense_MutationNAP125S0.3Arb2
STADchr593881529Missense_MutationNAF243L0.38Arb2
STADchr5940747655'UTRnovel0.15
THCAchr593881432Intronnovel0.08
THCAchr593881585Missense_MutationnovelA224E0.06Arb2
THCAchr593881586Nonsense_MutationnovelA224*0.06Arb2
UCECchr593784405Missense_MutationNAT334M0.45Arb2
UCECchr593776231Missense_MutationNAW346R0.38Arb2
UCECchr593958900Missense_MutationNAQ148H0.16Arb2
UCECchr593881604Missense_MutationNAD218H0.13Arb2
UCECchr594050762Missense_MutationNAW93L0.38
UCECchr594074644Splice_SiteNAX36_splice0.35
UCECchr593881493Nonsense_MutationnovelE255*0.42Arb2
UCECchr593958784Missense_MutationnovelA187D0.4Arb2
UCECchr593784405Missense_MutationNAT334M0.37Arb2
UCECchr593621053SilentNAA395A0.5
UCECchr593881537Missense_Mutationrs770845342R240Q0.44Arb2
UCECchr594074655Missense_MutationNAA33S0.13
UCECchr594050787Missense_MutationNAN85H0.33
UCECchr593881436Intronnovel0.34
UCECchr594053186Frame_Shift_InsnovelD50Rfs*20.43
UCECchr593784494Missense_MutationnovelI304M0.4Arb2
UCECchr5936207973'UTRnovel0.38
UCECchr593964515SilentNAT106T0.18
UCECchr594050731Missense_MutationNAE103D0.2Arb2
UCECchr594050756Missense_MutationnovelQ95R0.2
UCECchr593958800Missense_Mutationrs771012587P182S0.29Arb2
UCECchr593958915SilentnovelA143A0.5
UCECchr593784490Nonsense_MutationnovelR306*0.4Arb2
UCECchr593881538Nonsense_MutationnovelR240*0.43Arb2
UCECchr5936207053'UTRnovel0.36
UCECchr593621030Missense_MutationNAA403V0.44
UCECchr593958955Nonsense_MutationnovelE130Vfs*60.08Arb2
UCECchr5936208303'UTRnovel0.43
UCECchr593881565Missense_MutationNAD231Y0.29Arb2
UCECchr594074655Missense_MutationnovelA33T0.21
UCECchr594053181SilentnovelE51E0.47
UCECchr594053187Missense_MutationNAK49N0.3
UCECchr593776186SilentnovelL361L0.45
UCECchr593881537Missense_Mutationrs770845342R240Q0.32Arb2

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CHOLDEL0.13890.16947
COADDEL0.22841.1167e-13
HNSCDEL0.36211.5585e-09
LUADDEL0.30047.4776e-05
LUSCDEL0.66870.002071
MESODEL0.13790.20184
STADDEL0.30392.8835e-08
THCADEL0.0020.23456

Survival Analysis
CancerP-value Q-value
KIRC0.00011

Kaplan-Meier Survival Analysis

STAD0.018

Kaplan-Meier Survival Analysis

MESO0.021

Kaplan-Meier Survival Analysis

UCS0.0017

Kaplan-Meier Survival Analysis

HNSC0.02

Kaplan-Meier Survival Analysis

SKCM0.0077

Kaplan-Meier Survival Analysis

BRCA0.0072

Kaplan-Meier Survival Analysis

KIRP0.05

Kaplan-Meier Survival Analysis

PAAD0.0027

Kaplan-Meier Survival Analysis

PCPG0.045

Kaplan-Meier Survival Analysis

READ0.018

Kaplan-Meier Survival Analysis

KICH0.00084

Kaplan-Meier Survival Analysis

GBM0.049

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

THCA0.021

Kaplan-Meier Survival Analysis

LUAD0.038

Kaplan-Meier Survival Analysis

OV0.0072

Kaplan-Meier Survival Analysis

Drugs

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Input Drug :


Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000113391 (Gene tree)
Gene ID
83989
Gene Symbol
FAM172A
Alias
DKFZP564D172|Toupee|C5orf21
Full Name
family with sequence similarity 172 member A
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
493,975 bases
Position
chr5:93,617,725-94,111,699
Accession
25365
RBP type
canonical RBP
Summary
FAM172A (Family With Sequence Similarity 172 Member A) is a Protein Coding gene. Diseases associated with FAM172A include Charge Syndrome.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000423841Arb2PF09757.96.1e-0911
ENSP00000379294Arb2PF09757.99.5e-0911
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000395965FAM172A-2014312XM_005272103ENSP00000379294416 (aa)XP_005272160Q8WUF8
ENST00000504768FAM172A-203803--- (aa)--
ENST00000510445FAM172A-208557--- (aa)--
ENST00000511139FAM172A-209310--- (aa)--
ENST00000505869FAM172A-2041387-ENSP00000426284306 (aa)-Q8WUF8
ENST00000509163FAM172A-2061369XM_005272110ENSP00000423841370 (aa)XP_005272167Q8WUF8
ENST00000509739FAM172A-2071031XM_005272108ENSP00000421834269 (aa)XP_005272165B4DMI0
ENST00000502503FAM172A-2021392-ENSP00000424097305 (aa)-E9PBM2
ENST00000506398FAM172A-205965--- (aa)--
Gene Model
Click here to download ENSG00000113391's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000113391Respiratory Function Tests1.49124712248664E-717903307
ENSG00000113391Respiratory Function Tests1.8826612439496E-817903307
ENSG00000113391Respiratory Function Tests6.74895090126207E-617903307
ENSG00000113391Body Mass Index7.22887279638772E-717903300
ENSG00000113391Body Mass Index1.10469151797701E-517903300
ENSG00000113391Body Weight2.67278059279839E-617903300
ENSG00000113391Body Weight5.96812595477305E-617903300
ENSG00000113391Body Weight1.58845836324054E-717903300
ENSG00000113391Body Weight8.26936159252969E-617903300
ENSG00000113391Body Weight3.44588844138233E-617903300
ENSG00000113391Body Weight3.63822870074558E-717903300
ENSG00000113391Platelet Function Tests1.9066600E-005-
ENSG00000113391Platelet Function Tests2.7864800E-005-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000113391rs113647342593762365TNeuroticism29255261z score increase5.479EFO_0007660
ENSG00000113391rs6874223593877763ANeuroticism29255261z score increase4.87EFO_0007660
ENSG00000113391rs72786644593702893AEducational attainment (MTAG)30038396[0.0085-0.0151] unit increase0.0118EFO_0004784
ENSG00000113391rs72788321593967339GSelf-reported math ability30038396[0.029-0.052] unit increase0.0405EFO_0004875
ENSG00000113391rs115136616593685410CHighest math class taken30038396[0.026-0.047] unit decrease0.0367EFO_0004875
ENSG00000113391rs71641008594077633TSelf-reported math ability (MTAG)30038396[0.022-0.041] unit decrease0.0314EFO_0004875
ENSG00000113391rs62366053594053622?Reaction time29844566[0.0051-0.0119] unit decrease0.0085001EFO_0008393
ENSG00000113391rs12332731593697376AEducational attainment (years of education)30038396[0.01-0.017] unit increase0.0135EFO_0004784
ENSG00000113391rs55736786593758412THippocampal tail volume (corrected for total hippocampal volume)30279459NR mm3 decrease8.59EFO_0009398
ENSG00000113391rs10061069593735924GDepression30718901[1.02-1.03]1.025641EFO_0003761
ENSG00000113391rs71641008594077633?Aspartate aminotransferase levels in low alcohol consumption30589442[0.044-0.109] unit increase0.0763EFO_0004736|EFO_0007878
ENSG00000113391rs13184801593760836GNeuroticism30643256[0.0063-0.0132] unit decrease0.009756338EFO_0007660
ENSG00000113391rs13184801593760836GDepressive symptoms30643256[0.004-0.0085] unit decrease0.006273017EFO_0007006
ENSG00000113391rs10061069593735924CWell-being spectrum (multivariate analysis)30643256[0.0039-0.0082] unit decrease0.006036171EFO_0007869
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000113391's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000113391FAM172A8337.991ENSAPLG00000011555-9738.961Anas_platyrhynchos
ENSG00000113391FAM172A10089.873ENSAPLG00000004055FAM172A9788.366Anas_platyrhynchos
ENSG00000113391FAM172A8891.139ENSACAG00000013305FAM172A9589.344Anolis_carolinensis
ENSG00000113391FAM172A9095.000ENSANAG00000035869FAM172A9395.455Aotus_nancymaae
ENSG00000113391FAM172A10098.734ENSBTAG00000050195FAM172A10097.356Bos_taurus
ENSG00000113391FAM172A10099.038ENSCJAG00000010444FAM172A10099.038Callithrix_jacchus
ENSG00000113391FAM172A8998.378ENSCAFG00000008064FAM172A9998.378Canis_familiaris
ENSG00000113391FAM172A10098.734ENSCAFG00020006210FAM172A10096.875Canis_lupus_dingo
ENSG00000113391FAM172A10098.734ENSCHIG00000008440FAM172A10097.115Capra_hircus
ENSG00000113391FAM172A8796.992ENSTSYG00000006286FAM172A8596.992Carlito_syrichta
ENSG00000113391FAM172A6397.500ENSCAPG00000014103-10097.500Cavia_aperea
ENSG00000113391FAM172A10098.734ENSCCAG00000023116FAM172A10098.558Cebus_capucinus
ENSG00000113391FAM172A10097.468ENSCLAG00000005472FAM172A10097.468Chinchilla_lanigera
ENSG00000113391FAM172A9551.852ENSCPBG00000004402-9644.173Chrysemys_picta_bellii
ENSG00000113391FAM172A9498.958ENSCANG00000040412FAM172A9898.958Colobus_angolensis_palliatus
ENSG00000113391FAM172A10097.596ENSDNOG00000004689FAM172A10097.596Dasypus_novemcinctus
ENSG00000113391FAM172A10092.459ENSDORG00000013558Fam172a9792.459Dipodomys_ordii
ENSG00000113391FAM172A8940.000ENSEBUG00000016097-6240.000Eptatretus_burgeri
ENSG00000113391FAM172A10096.203ENSECAG00000018274FAM172A9794.568Equus_caballus
ENSG00000113391FAM172A9195.522ENSEEUG00000002887FAM172A9784.444Erinaceus_europaeus
ENSG00000113391FAM172A9968.901ENSELUG00000017647fam172a9669.287Esox_lucius
ENSG00000113391FAM172A10098.734ENSFCAG00000025443FAM172A10097.837Felis_catus
ENSG00000113391FAM172A9644.011ENSFALG00000006501-10044.011Ficedula_albicollis
ENSG00000113391FAM172A8889.538ENSFALG00000009072FAM172A9590.141Ficedula_albicollis
ENSG00000113391FAM172A10089.459ENSGALG00000014661FAM172A9789.109Gallus_gallus
ENSG00000113391FAM172A9256.923ENSGAGG00000022828-9345.609Gopherus_agassizii
ENSG00000113391FAM172A10093.671ENSGAGG00000003839FAM172A9792.079Gopherus_agassizii
ENSG00000113391FAM172A10099.279ENSGGOG00000010296FAM172A10099.279Gorilla_gorilla
ENSG00000113391FAM172A10096.203ENSHGLG00000011178FAM172A10096.203Heterocephalus_glaber_female
ENSG00000113391FAM172A8997.019ENSHGLG00100013340FAM172A10096.203Heterocephalus_glaber_male
ENSG00000113391FAM172A10098.734ENSSTOG00000009918FAM172A10097.356Ictidomys_tridecemlineatus
ENSG00000113391FAM172A9847.671ENSLACG00000001532si:ch73-41e3.710046.950Latimeria_chalumnae
ENSG00000113391FAM172A10075.871ENSLOCG00000001629fam172a9777.037Lepisosteus_oculatus
ENSG00000113391FAM172A9498.611ENSMFAG00000001171FAM172A9898.611Macaca_fascicularis
ENSG00000113391FAM172A10099.459ENSMNEG00000039938FAM172A9898.611Macaca_nemestrina
ENSG00000113391FAM172A5743.949ENSMGAG00000016079-7443.949Meleagris_gallopavo
ENSG00000113391FAM172A10098.734ENSMICG00000030403FAM172A10098.558Microcebus_murinus
ENSG00000113391FAM172A10096.203ENSMOCG00000003613Fam172a10094.054Microtus_ochrogaster
ENSG00000113391FAM172A10092.405ENSMODG00000020131FAM172A9790.594Monodelphis_domestica
ENSG00000113391FAM172A10093.791MGP_PahariEiJ_G0015818Fam172a10094.937Mus_pahari
ENSG00000113391FAM172A100100.000ENSNGAG00000019570Fam172a10097.568Nannospalax_galili
ENSG00000113391FAM172A9896.990ENSNLEG00000013903FAM172A9896.990Nomascus_leucogenys
ENSG00000113391FAM172A8890.741ENSOANG00000011068FAM172A9591.292Ornithorhynchus_anatinus
ENSG00000113391FAM172A9797.772ENSOCUG00000007299FAM172A9697.531Oryctolagus_cuniculus
ENSG00000113391FAM172A10096.394ENSOGAG00000015189FAM172A10096.394Otolemur_garnettii
ENSG00000113391FAM172A8998.734ENSOARG00000016711FAM172A8594.355Ovis_aries
ENSG00000113391FAM172A9697.619ENSPPAG00000030542FAM172A9997.619Pan_paniscus
ENSG00000113391FAM172A10098.734ENSPPRG00000006653FAM172A10097.837Panthera_pardus
ENSG00000113391FAM172A10098.734ENSPTIG00000012681FAM172A10097.837Panthera_tigris_altaica
ENSG00000113391FAM172A9697.619ENSPTRG00000017074FAM172A9997.619Pan_troglodytes
ENSG00000113391FAM172A9498.611ENSPANG00000011687FAM172A9898.611Papio_anubis
ENSG00000113391FAM172A9774.167ENSPKIG00000012314fam172a9683.516Paramormyrops_kingsleyae
ENSG00000113391FAM172A5993.750ENSPSIG00000010144-10093.750Pelodiscus_sinensis
ENSG00000113391FAM172A10097.468ENSPEMG00000009604-10097.468Peromyscus_maniculatus_bairdii
ENSG00000113391FAM172A10093.671ENSPCIG00000028612FAM172A9790.594Phascolarctos_cinereus
ENSG00000113391FAM172A10090.335ENSPCOG00000024072FAM172A9695.378Propithecus_coquereli
ENSG00000113391FAM172A8994.465ENSRNOG00000013844Fam172a10094.465Rattus_norvegicus
ENSG00000113391FAM172A8178.027ENSRBIG00000028680-7993.820Rhinopithecus_bieti
ENSG00000113391FAM172A9498.958ENSRROG00000023807FAM172A9898.958Rhinopithecus_roxellana
ENSG00000113391FAM172A10098.798ENSSBOG00000019860FAM172A10098.798Saimiri_boliviensis_boliviensis
ENSG00000113391FAM172A10093.671ENSSHAG00000013743FAM172A9790.594Sarcophilus_harrisii
ENSG00000113391FAM172A10088.608ENSSPUG00000008161FAM172A9788.614Sphenodon_punctatus
ENSG00000113391FAM172A10098.734ENSSSCG00000027608FAM172A10098.108Sus_scrofa
ENSG00000113391FAM172A10088.608ENSTGUG00000000715FAM172A10087.368Taeniopygia_guttata
ENSG00000113391FAM172A8862.295ENSTGUG00000013623-10047.321Taeniopygia_guttata
ENSG00000113391FAM172A7779.747ENSTNIG00000009902fam172a9959.036Tetraodon_nigroviridis
ENSG00000113391FAM172A10094.595ENSTTRG00000001521FAM172A9794.321Tursiops_truncatus
ENSG00000113391FAM172A10098.734ENSUMAG00000005442FAM172A10098.317Ursus_maritimus
ENSG00000113391FAM172A10098.734ENSVVUG00000022112FAM172A10096.875Vulpes_vulpes
ENSG00000113391FAM172A9743.443ENSXETG00000033027-9942.708Xenopus_tropicalis
ENSG00000113391FAM172A10082.210ENSXETG00000011592fam172a9682.512Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000381regulation of alternative mRNA splicing, via spliceosome-ISSProcess
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISSComponent
GO:0005783endoplasmic reticulum-IDAComponent
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0014032neural crest cell development-ISSProcess
GO:0031048chromatin silencing by small RNA21873635.IBAProcess
GO:0035197siRNA binding21873635.IBAFunction
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