EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1160849963Missense_MutationnovelE304D0.47
BLCAchr1160842832Silentrs752289054P236P0.2
BLCAchr1160842554Missense_MutationnovelE144K0.08
BLCAchr1160849945Missense_MutationNAK298N0.28
BLCAchr1160848033Missense_MutationnovelE290Q0.32
BRCAchr11608503933'UTRnovel0.46
CESCchr1160847937Missense_MutationnovelL258F0.44
CESCchr1160842363Missense_MutationnovelS80L0.09Cgr1
CESCchr1160842832Silentrs752289054P236P0.3
CESCchr1160842450Missense_MutationnovelY109C0.31
CESCchr11608504543'UTRrs5319366570.37
ESCAchr1160842473Nonsense_MutationnovelQ117*0.45
ESCAchr1160842504Missense_MutationnovelC127Y0.52
GBMchr1160842616SilentnovelY164Y0.23
HNSCchr1160842154Silentrs760505982R10R0.23
HNSCchr1160842150Missense_MutationNAR9Q0.16Cgr1
HNSCchr1160842765Missense_MutationnovelR214Q0.26
KIRPchr1160842154Silentrs760505982R10R0.18
LIHCchr1160842470Missense_Mutationrs762413004C116R0.4
LUADchr1160842388SilentNAG88G0.19
LUADchr11608503633'UTRnovel0.34
LUADchr1160848033Nonsense_MutationnovelE290*0.16
LUADchr11608503503'UTRnovel0.33
LUADchr1160842718SilentNAP198P0.19
LUADchr1160842625Missense_MutationnovelQ167H0.34
LUADchr1160842877SilentnovelK251K0.2
LUSCchr1160842688SilentnovelS188S0.69
LUSCchr1160842300Missense_MutationnovelP59R0.65Cgr1
LUSCchr1160850223Missense_MutationNAK327N0.16
LUSCchr1160842519Missense_MutationNAG132E0.19
MESOchr1160842142Missense_MutationnovelR6S0.28Cgr1
MESOchr1160842153Missense_Mutationrs775638540R10Q0.22Cgr1
OVchr1160850289SilentNAQ349Q0.21
OVchr1160842569Frame_Shift_InsnovelQ151Pfs*440.34
OVchr11608503363'UTRnovel0.35
OVchr1160842759Missense_MutationnovelK212T0.58
PCPGchr1160847929Missense_MutationnovelS255F0.06
PRADchr1160847985Nonsense_Mutationrs749492752R274*0.3
READchr1160842328SilentNAG68G0.42
READchr1160848049Missense_MutationnovelR295L0.29
READchr1160847956Missense_Mutationrs376975583R264H0.63
READchr1160842550Missense_MutationNAK142N0.4
SKCMchr1160847962Missense_Mutationrs753482209S266L0.29
SKCMchr11608504023'UTRnovel0.28
SKCMchr1160842229SilentNAF35F0.24
SKCMchr1160847962Missense_Mutationrs753482209S266L0.21
SKCMchr1160842301SilentNAP59P0.18
SKCMchr1160842371Missense_MutationNAG83R0.54
SKCMchr1160847955Missense_MutationNAR264C0.12
STADchr1160847963Silentrs528265287S266S0.35
STADchr1160842528Missense_MutationNAA135D0.38
STADchr1160842496SilentnovelA124A0.11
STADchr1160850298Silentrs200900511P352P0.14
STADchr1160842463SilentNAS113S0.22
STADchr1160850308Missense_MutationNAP356S0.4
STADchr1160842500Missense_MutationNAK126Q0.15
UCECchr1160842868SilentnovelD248D0.16
UCECchr1160842609Missense_MutationNAE162A0.33
UCECchr1160842323Missense_MutationNAP67S0.45Cgr1
UCECchr1160847970Missense_Mutationrs369561736R269W0.31
UCECchr1160849977Missense_Mutationrs200195261R309H0.2
UCECchr1160850266Missense_Mutationrs542028164R342W0.33
UCECchr11608419675'Flanknovel0.21
UCECchr1160847986Missense_Mutationrs370580113R274Q0.51
UCECchr1160842306Missense_MutationnovelR61K0.1Cgr1
UCECchr11608506873'UTRnovel0.27
UCECchr1160849976Missense_Mutationrs772893109R309C0.61
UCECchr1160847927Missense_MutationNAF254L0.14
UCECchr11608503603'UTRnovel0.18
UCECchr11608506783'UTRnovel0.54
UCECchr11608505433'UTRrs7756401510.26
UCECchr1160850003Missense_MutationnovelV318I0.49
UCECchr1160847987SilentnovelR274R0.38
UCECchr1160842383Missense_MutationnovelP87S0.33
UCECchr1160842751SilentnovelF209F0.4
UCECchr11608505453'UTRnovel0.15
UCECchr1160842569Frame_Shift_InsnovelQ151Pfs*440.53
UCECchr1160849974Missense_Mutationrs769571200R308H0.17
UCECchr1160842507Missense_MutationnovelS128F0.26
UCECchr1160847949Missense_MutationnovelP262S0.2
UCECchr1160850217Silentrs577306291P325P0.38
UCECchr1160842687Frame_Shift_Delrs770211846R190Gfs*160.3
UCECchr1160842354Missense_MutationnovelG77D0.42Cgr1
UCECchr1160847985Nonsense_Mutationrs749492752R274*0.48

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ESCAAMP0.17930.018342
TGCTDEL0.68670.21504

Survival Analysis
CancerP-value Q-value
KIRC0.018

Kaplan-Meier Survival Analysis

STAD0.028

Kaplan-Meier Survival Analysis

SARC0.047

Kaplan-Meier Survival Analysis

MESO0.0019

Kaplan-Meier Survival Analysis

ACC0.036

Kaplan-Meier Survival Analysis

HNSC0.0001

Kaplan-Meier Survival Analysis

SKCM0.029

Kaplan-Meier Survival Analysis

LAML0.033

Kaplan-Meier Survival Analysis

UCEC0.00013

Kaplan-Meier Survival Analysis

LIHC0.00011

Kaplan-Meier Survival Analysis

LGG0.00066

Kaplan-Meier Survival Analysis

LUAD0.00051

Kaplan-Meier Survival Analysis

OV0.016

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000110104 (Gene tree)
Gene ID
79080
Gene Symbol
CCDC86
Alias
MGC2574
Full Name
coiled-coil domain containing 86
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
9,133 bases
Position
chr11:60,841,956-60,851,088
Accession
28359
RBP type
canonical RBP
Summary
(Coiled-Coil Domain Containing 86) is a Protein Coding gene. Diseases associated with CCDC86 include Granulomatosis With Polyangiitis.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000227520Cgr1PF03879.142.7e-1511
ENSP00000440906Cgr1PF03879.142.9e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000227520CCDC86-2011893-ENSP00000227520360 (aa)-Q9H6F5
ENST00000535217CCDC86-2021488-ENSP0000044211188 (aa)-H0YG79
ENST00000649393CCDC86-2042567--- (aa)--
ENST00000545580CCDC86-203697-ENSP00000440906104 (aa)-Q9H6F5
Gene Model
Click here to download ENSG00000110104's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000110104Waist Circumference6.851e-005-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000110104's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000110104CCDC8610093.269ENSAMEG00000007330CCDC8610076.177Ailuropoda_melanoleuca
ENSG00000110104CCDC869979.612ENSACAG00000017814CCDC867780.315Anolis_carolinensis
ENSG00000110104CCDC8610095.192ENSANAG00000029335CCDC8610092.500Aotus_nancymaae
ENSG00000110104CCDC869363.918ENSAMXG00000037666si:ch211-217k17.75567.500Astyanax_mexicanus
ENSG00000110104CCDC8610091.346ENSBTAG00000014215CCDC8610075.556Bos_taurus
ENSG00000110104CCDC868148.810WBGene00012739Y40B1B.78546.154Caenorhabditis_elegans
ENSG00000110104CCDC8610094.231ENSCJAG00000016483CCDC8610091.111Callithrix_jacchus
ENSG00000110104CCDC8610091.346ENSCAFG00000016456CCDC869758.663Canis_familiaris
ENSG00000110104CCDC8610092.308ENSCAFG00020012558CCDC869758.967Canis_lupus_dingo
ENSG00000110104CCDC8610091.346ENSCHIG00000014465CCDC8610076.111Capra_hircus
ENSG00000110104CCDC8610089.423ENSTSYG00000035677-10089.423Carlito_syrichta
ENSG00000110104CCDC8610088.462ENSCPOG00000027361CCDC869556.948Cavia_porcellus
ENSG00000110104CCDC8610096.154ENSCCAG00000035527CCDC8610092.500Cebus_capucinus
ENSG00000110104CCDC8610099.038ENSCATG00000031881CCDC8610094.722Cercocebus_atys
ENSG00000110104CCDC8610098.077ENSCSAG00000006236CCDC8610094.167Chlorocebus_sabaeus
ENSG00000110104CCDC868848.352ENSCING00000022286-8251.852Ciona_intestinalis
ENSG00000110104CCDC8610098.077ENSCANG00000031899-10098.077Colobus_angolensis_palliatus
ENSG00000110104CCDC8610089.423ENSCGRG00001006868Ccdc8610068.785Cricetulus_griseus_chok1gshd
ENSG00000110104CCDC8610089.423ENSCGRG00000012233Ccdc8610068.785Cricetulus_griseus_crigri
ENSG00000110104CCDC869064.894ENSCVAG00000003135si:ch211-217k17.76850.242Cyprinodon_variegatus
ENSG00000110104CCDC8610094.231ENSDNOG00000006246CCDC8610077.348Dasypus_novemcinctus
ENSG00000110104CCDC869693.000ENSDORG00000006899Ccdc8610069.274Dipodomys_ordii
ENSG00000110104CCDC867850.617FBgn0031040CG142107748.182Drosophila_melanogaster
ENSG00000110104CCDC8610093.269ENSEASG00005008042CCDC8610078.056Equus_asinus_asinus
ENSG00000110104CCDC8610094.231ENSECAG00000001495CCDC8610078.056Equus_caballus
ENSG00000110104CCDC8610090.385ENSEEUG00000011844CCDC8610068.144Erinaceus_europaeus
ENSG00000110104CCDC8610094.231ENSFCAG00000013666-10094.231Felis_catus
ENSG00000110104CCDC869958.252ENSFHEG00000021501-8460.784Fundulus_heteroclitus
ENSG00000110104CCDC869870.588ENSGALG00000036935CCDC869870.588Gallus_gallus
ENSG00000110104CCDC869064.894ENSGAFG00000005681si:ch211-217k17.75258.125Gambusia_affinis
ENSG00000110104CCDC869055.319ENSGACG00000017630si:ch211-217k17.75160.684Gasterosteus_aculeatus
ENSG00000110104CCDC869185.263ENSGAGG00000010152-6063.776Gopherus_agassizii
ENSG00000110104CCDC86100100.000ENSGGOG00000013670CCDC8610098.611Gorilla_gorilla
ENSG00000110104CCDC869160.000ENSHBUG00000010352si:ch211-217k17.77047.005Haplochromis_burtoni
ENSG00000110104CCDC869887.255ENSHGLG00000003464CCDC868763.435Heterocephalus_glaber_female
ENSG00000110104CCDC869887.255ENSHGLG00100010685CCDC869974.519Heterocephalus_glaber_male
ENSG00000110104CCDC8610092.308ENSSTOG00000021259CCDC8610065.574Ictidomys_tridecemlineatus
ENSG00000110104CCDC8610088.462ENSJJAG00000013786Ccdc8610069.252Jaculus_jaculus
ENSG00000110104CCDC869062.766ENSLACG00000001391-5555.000Latimeria_chalumnae
ENSG00000110104CCDC869993.204ENSLAFG00000009449CCDC869976.309Loxodonta_africana
ENSG00000110104CCDC8610098.077ENSMFAG00000036759CCDC8610095.000Macaca_fascicularis
ENSG00000110104CCDC8610098.077ENSMMUG00000000019CCDC8610095.000Macaca_mulatta
ENSG00000110104CCDC8610098.077ENSMNEG00000034225CCDC8610094.722Macaca_nemestrina
ENSG00000110104CCDC8610099.038ENSMLEG00000035102-10095.000Mandrillus_leucophaeus
ENSG00000110104CCDC869160.000ENSMZEG00005019822si:ch211-217k17.77047.465Maylandia_zebra
ENSG00000110104CCDC8610095.192ENSMICG00000046625CCDC8610083.149Microcebus_murinus
ENSG00000110104CCDC8610089.423ENSMOCG00000009306Ccdc8610069.697Microtus_ochrogaster
ENSG00000110104CCDC869987.379ENSMODG00000020334CCDC869952.432Monodelphis_domestica
ENSG00000110104CCDC868666.292ENSMALG00000001758-8966.292Monopterus_albus
ENSG00000110104CCDC8610091.346MGP_CAROLIEiJ_G0022707-10070.523Mus_caroli
ENSG00000110104CCDC8610091.346ENSMUSG00000024732Ccdc867070.032Mus_musculus
ENSG00000110104CCDC8610090.385MGP_PahariEiJ_G0014201-10068.871Mus_pahari
ENSG00000110104CCDC8610091.346MGP_SPRETEiJ_G0023621Ccdc8610065.625Mus_spretus
ENSG00000110104CCDC8610095.192ENSMPUG00000014457CCDC8610072.299Mustela_putorius_furo
ENSG00000110104CCDC8610087.619ENSMLUG00000005025CCDC8610069.337Myotis_lucifugus
ENSG00000110104CCDC8610090.385ENSNGAG00000013322Ccdc8610065.934Nannospalax_galili
ENSG00000110104CCDC869459.184ENSNBRG00000013330-8259.184Neolamprologus_brichardi
ENSG00000110104CCDC8610098.077ENSNLEG00000013582CCDC8610095.000Nomascus_leucogenys
ENSG00000110104CCDC8610093.269ENSOPRG00000008605CCDC8610066.298Ochotona_princeps
ENSG00000110104CCDC869061.702ENSONIG00000017568si:ch211-217k17.76947.706Oreochromis_niloticus
ENSG00000110104CCDC8610094.231ENSOCUG00000026432CCDC8610059.167Oryctolagus_cuniculus
ENSG00000110104CCDC868764.444ENSORLG00020021345si:ch211-217k17.76552.174Oryzias_latipes_hni
ENSG00000110104CCDC8610095.192ENSOGAG00000016746CCDC8610076.796Otolemur_garnettii
ENSG00000110104CCDC8610090.385ENSOARG00000015563-10075.833Ovis_aries
ENSG00000110104CCDC86100100.000ENSPPAG00000042424CCDC8610098.611Pan_paniscus
ENSG00000110104CCDC8610093.269ENSPPRG00000004149-10093.269Panthera_pardus
ENSG00000110104CCDC8610094.231ENSPTIG00000009448-10094.231Panthera_tigris_altaica
ENSG00000110104CCDC86100100.000ENSPTRG00000003721CCDC8610098.889Pan_troglodytes
ENSG00000110104CCDC8610099.038ENSPANG00000019203CCDC8610095.278Papio_anubis
ENSG00000110104CCDC869979.612ENSPSIG00000006919-9979.612Pelodiscus_sinensis
ENSG00000110104CCDC8610090.385ENSPEMG00000015052Ccdc8610070.799Peromyscus_maniculatus_bairdii
ENSG00000110104CCDC869987.379ENSPCIG00000003543-8551.437Phascolarctos_cinereus
ENSG00000110104CCDC869064.894ENSPFOG00000011617si:ch211-217k17.75555.882Poecilia_formosa
ENSG00000110104CCDC869064.894ENSPLAG00000016122si:ch211-217k17.75555.882Poecilia_latipinna
ENSG00000110104CCDC869064.894ENSPMEG00000018535si:ch211-217k17.76152.083Poecilia_mexicana
ENSG00000110104CCDC869063.830ENSPREG00000005478si:ch211-217k17.75454.706Poecilia_reticulata
ENSG00000110104CCDC8610099.038ENSPPYG00000003205CCDC8610098.056Pongo_abelii
ENSG00000110104CCDC8610097.115ENSPCOG00000023421CCDC8610082.597Propithecus_coquereli
ENSG00000110104CCDC8610095.192ENSPVAG00000014665CCDC8610076.177Pteropus_vampyrus
ENSG00000110104CCDC869363.918ENSPNAG00000010886si:ch211-217k17.75265.000Pygocentrus_nattereri
ENSG00000110104CCDC8610090.385ENSRNOG00000020925Ccdc8610068.785Rattus_norvegicus
ENSG00000110104CCDC8610097.115ENSRBIG00000042197CCDC8610093.889Rhinopithecus_bieti
ENSG00000110104CCDC8610097.115ENSRROG00000043134CCDC8610094.167Rhinopithecus_roxellana
ENSG00000110104CCDC8610096.154ENSSBOG00000029431CCDC8610090.833Saimiri_boliviensis_boliviensis
ENSG00000110104CCDC869488.776ENSSHAG00000009092-8754.030Sarcophilus_harrisii
ENSG00000110104CCDC869462.245ENSSFOG00015009402si:ch211-217k17.79162.245Scleropages_formosus
ENSG00000110104CCDC869975.728ENSSPUG00000013667-9975.728Sphenodon_punctatus
ENSG00000110104CCDC8610096.154ENSSSCG00000013105CCDC8610075.342Sus_scrofa
ENSG00000110104CCDC869875.490ENSTGUG00000006282-9875.490Taeniopygia_guttata
ENSG00000110104CCDC8610094.231ENSTBEG00000015260CCDC8610066.575Tupaia_belangeri
ENSG00000110104CCDC8610086.538ENSTTRG00000012404CCDC8610069.722Tursiops_truncatus
ENSG00000110104CCDC8610096.154ENSUAMG00000023428CCDC8610077.008Ursus_americanus
ENSG00000110104CCDC8610096.154ENSUMAG00000011594CCDC8610077.008Ursus_maritimus
ENSG00000110104CCDC8610090.385ENSVVUG00000005303CCDC8610062.327Vulpes_vulpes
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding15607035.IPIFunction
GO:0005634nucleus-IDAComponent
GO:0005730nucleolus-IDAComponent
GO:0016032viral process-IEAProcess
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