EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
28627627Stromal antigen 2 functions as a tumor suppressor in bladder cancer cells.Oncol Rep2017 AugWang Hdoi: 10.3892/or.2017.5711
24121791Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy.Nat Genet2013 DecBalb??s-Mart??nez Cdoi: 10.1038/ng.2799
27500726Loss of cohesin complex components STAG2 or STAG3 confers resistance to BRAF inhibition in melanoma.Nat Med2016 SepShen CHdoi: 10.1038/nm.4155
28819029Loss of Tumor Suppressor STAG2 Promotes Telomere Recombination and Extends the Replicative Lifespan of Normal Human Cells.Cancer Res2017 Oct 15Daniloski Zdoi: 10.1158/0008-5472.CAN-17-1260
26838030Complete loss of STAG2 expression is an indicator of good prognosis in patients with bladder cancer.Tumour Biol2016 AugQiao Ydoi: 10.1007/s13277-016-4894-4
24121789Frequent truncating mutations of STAG2 in bladder cancer.Nat Genet2013 DecSolomon DAdoi: 10.1038/ng.2800
25867412Loss of STAG2 causes aneuploidy in normal human bladder cells.Genet Mol Res2015 Mar 30Li Xdoi: 10.4238/2015.March.30.24.
24270882Frequent inactivating mutations of STAG2 in bladder cancer are associated with low tumour grade and stage and inversely related to chromosomal copy number changes.Hum Mol Genet2014 Apr 15Taylor CFdoi: 10.1093/hmg/ddt589
27207471Cohesin mutations in human cancer.Biochim Biophys Acta2016 AugHill VKdoi: 10.1016/j.bbcan.2016.05.002
28967037Loss of Stromal Antigen 2 (STAG2) Expression in Upper Urinary Tract Carcinoma: Differential Prognostic Effect According to the Ki-67 Proliferating Index.Ann Surg Oncol2017 DecMiyakawa Jdoi: 10.1245/s10434-017-6097-7
29501732The role of STAG2 in bladder cancer.Pharmacol Res2018 MayAquila Ldoi: 10.1016/j.phrs.2018.02.025

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchrX124081516Missense_MutationnovelA971V0.92
BLCAchrX124076438Frame_Shift_InsnovelY889Lfs*90.88
BLCAchrX124063161Nonsense_MutationNAQ593*0.9
BLCAchrX124045360Missense_MutationnovelT220I0.08
BLCAchrX124083530Nonsense_MutationNAR1012*1
BLCAchrX124056144Frame_Shift_DelnovelL405Sfs*200.73
BLCAchrX124045274Missense_MutationnovelI191M0.94
BLCAchrX124068625Missense_MutationnovelL776P0.45
BLCAchrX124056179SilentNAL416L0.43
BLCAchrX124071184SilentnovelF798F0.74
BLCAchrX124071292SilentnovelF834F0.77
BLCAchrX124037539Frame_Shift_DelnovelD101Lfs*80.92
BLCAchrX124063161Nonsense_MutationNAQ593*0.74
BLCAchrX124062952Missense_MutationnovelI563M0.89
BLCAchrX124045347Nonsense_MutationNAR216*0.06
BLCAchrX124056156Missense_MutationnovelD409H0.2
BLCAchrX124083530Nonsense_MutationNAR1012*0.08
BLCAchrX124066189Missense_MutationNAS704L0.37
BLCAchrX124068615Nonsense_MutationNAQ773*0.95
BLCAchrX124050205Nonsense_MutationNAR305*0.25
BLCAchrX124025865Missense_MutationnovelD24H0.39
BLCAchrX124050237Nonsense_MutationnovelW315*0.35
BLCAchrX124049003Splice_SiteNAX274_splice0.48
BLCAchrX124061292Nonsense_MutationnovelW495*0.98
BLCAchrX124090737Frame_Shift_DelnovelE1147Dfs*160.55
BLCAchrX124063901Frame_Shift_InsnovelT626Nfs*90.41
BLCAchrX124050283Nonsense_MutationnovelY331*0.89
BLCAchrX124045347SilentNAR216R0.38
BLCAchrX124063161Nonsense_MutationNAQ593*0.97
BLCAchrX124045327Frame_Shift_DelnovelD209Vfs*290.64
BLCAchrX124094107In_Frame_DelnovelE1187_D1192del0.2
BLCAchrX124037605Nonsense_MutationNAQ123*0.95
BLCAchrX124045342Missense_MutationnovelA214V0.47
BLCAchrX124050279Frame_Shift_DelnovelK330Ifs*80.9
BLCAchrX124086622Frame_Shift_DelnovelY1044Tfs*60.89
BLCAchrX124062901Splice_SitenovelX547_splice0.8
BLCAchrX124050271Frame_Shift_DelnovelS327Vfs*30.94
BLCAchrX124050273Frame_Shift_DelnovelY328*0.94
BLCAchrX124090699Frame_Shift_DelnovelE1135Ifs*210.26
BLCAchrX124068595Missense_MutationnovelR766K0.64
BLCAchrX124076402Frame_Shift_DelnovelK870Ifs*210.7
BLCAchrX124063161Nonsense_MutationNAQ593*0.67
BLCAchrX124037622Splice_SitenovelX129_splice0.11
BLCAchrX124062914Nonsense_MutationnovelK551*0.63
BLCAchrX124037592SilentnovelI118I0.09
BLCAchrX124076348Missense_MutationnovelD850E0.14
BLCAchrX124076349Nonsense_MutationnovelE851*0.13
BLCAchrX124068612Missense_Mutationrs762388218C772R0.4
BLCAchrX124051211Missense_MutationNAR370W0.42
BLCAchrX124094112Nonsense_MutationnovelG1188*0.7
BLCAchrX124078030Frame_Shift_InsnovelK917*0.9
BLCAchrX124063161Nonsense_MutationNAQ593*0.48
BLCAchrX124078023Nonsense_MutationNAQ914*0.24
BLCAchrX124086578Nonsense_MutationNAQ1029*0.96
BLCAchrX124086670SilentnovelV1059V1
BLCAchrX124045324Missense_MutationnovelS208Y0.79
BLCAchrX124063953Frame_Shift_DelnovelE643Lfs*140.92
BLCAchrX124045347Nonsense_MutationNAR216*0.84
BLCAchrX124066260Nonsense_MutationNAQ728*0.76
BLCAchrX124056225Missense_MutationnovelL432F0.96
BLCAchrX124081491Nonsense_MutationNAQ963*0.88
BLCAchrX124066174Splice_SiteNAX699_splice0.43
BLCAchrX124090714Missense_MutationnovelM1139I0.12
BLCAchrX124062973SilentnovelA570A0.31
BLCAchrX124063180Frame_Shift_InsnovelY600Ifs*350.89
BLCAchrX124061309Nonsense_MutationnovelL501*0.53
BLCAchrX124086606Nonsense_MutationNAW1038*0.84
BLCAchrX124071154SilentnovelF788F0.64
BLCAchrX124076337Nonsense_MutationNAQ847*0.62
BRCAchrX124049017Missense_MutationNAQ278E0.22
BRCAchrX124047441Missense_MutationNAR252Q0.21
BRCAchrX124061854Nonsense_MutationNAG540*0.29
BRCAchrX124077984Missense_MutationNAK901E0.34
BRCAchrX124090914Intronnovel0.07
BRCAchrX124065943Missense_MutationNAH698R0.24
BRCAchrX1240226045'UTRnovel0.24
BRCAchrX124066174Splice_SiteNAX699_splice0.23
BRCAchrX124083494Missense_MutationnovelL1000F0.42
BRCAchrX124062941Missense_MutationNAR560W0.45
BRCAchrX1241011723'Flanknovel0.13
BRCAchrX124056165Missense_MutationnovelN412Y0.05
BRCAchrX124095395SilentnovelE1206E0.06
BRCAchrX124056153Missense_MutationnovelE408K0.16
BRCAchrX124071161SilentnovelL791L0.06
BRCAchrX124062975Missense_MutationNAL571P0.15
BRCAchrX124063909Missense_MutationnovelV628A0.19
BRCAchrX124090682Missense_MutationNAP1129S0.11
BRCAchrX124045347Nonsense_MutationNAR216*0.06
BRCAchrX124045200Nonsense_MutationNAQ167*0.23
BRCAchrX124031043Missense_MutationNAR69Q0.3
BRCAchrX124045256SilentNAQ185Q0.15
BRCAchrX1241007713'UTRnovel0.19
BRCAchrX124090870Intronnovel0.05
BRCAchrX124090872Intronnovel0.02
BRCAchrX1241007693'UTRnovel0.06
BRCAchrX1239607955'Flanknovel0.08
BRCAchrX1241010783'Flanknovel0.14
BRCAchrX124061263Missense_MutationNAD486N0.18
BRCAchrX124081496Silentrs753646242L964L0.08
CESCchrX124090660SilentnovelL1121L0.1
CESCchrX124061230Missense_MutationnovelE475K0.15
CESCchrX1241017403'Flanknovel0.42
CESCchrX124065923SilentnovelL691L0.17
CESCchrX124095419Missense_MutationNAF1214L0.49
CESCchrX1241007643'UTRnovel0.25
CESCchrX124050199Missense_MutationNAE303K0.11
CESCchrX124031113Missense_MutationNAK92N0.16
CESCchrX124037592Frame_Shift_InsnovelN119*0.09
CESCchrX124045366Missense_MutationnovelA222V0.45
CESCchrX1241009503'Flanknovel0.31
CESCchrX1241016683'Flanknovel0.46
CESCchrX1241021173'Flanknovel0.28
CESCchrX124049062Missense_MutationnovelF293L0.2
CESCchrX124061832Silentrs778891520A532A0.17
CESCchrX124045330Nonsense_MutationnovelS210*0.52
CESCchrX124063157In_Frame_InsnovelP592_L605dup0.12
CESCchrX1239618255'UTRnovel0.82
CHOLchrX124066403Missense_MutationnovelQ744H0.94
COADchrX124047406SilentNAN240N0.7
COADchrX124037596Frame_Shift_DelNAF121Lfs*240.35
COADchrX124042603SilentNAQ140Q0.33
COADchrX124057954Missense_MutationNAV465F0.11
COADchrX124090961Intronnovel0.11
COADchrX1240225735'UTRnovel0.24
COADchrX124031012Missense_MutationnovelG59R0.06
COADchrX124095400Frame_Shift_DelnovelT1208Kfs*30.87
COADchrX124081485Missense_MutationnovelL961F0.06
COADchrX124083531Missense_MutationNAR1012Q0.7
COADchrX124051171SilentNAY356Y0.44
COADchrX124056156Missense_Mutationrs773224655D409Y0.26
COADchrX124086690Missense_MutationnovelR1066Q0.6
DLBCchrX124049042Missense_MutationnovelN286I0.08
ESCAchrX124081524Missense_MutationnovelH974Y1
ESCAchrX124042578Missense_MutationnovelT132K0.13
ESCAchrX1241013033'Flanknovel0.09
ESCAchrX1241013053'Flanknovel0.08
ESCAchrX1241010493'Flanknovel0.32
ESCAchrX124031126Splice_SitenovelX96_splice0.91
GBMchrX124037566Nonsense_MutationNAR110*0.92
GBMchrX124042647Splice_SiteNAX154_splice0.81
GBMchrX124063934Nonsense_MutationNAY636*0.6
GBMchrX124081501Missense_MutationNAT966K0.24
GBMchrX124071235Nonsense_MutationNAY815*0.34
GBMchrX124071196Frame_Shift_DelNAM803Vfs*50.62
GBMchrX124057977Frame_Shift_Delnovel0.59
GBMchrX124022643Nonsense_MutationnovelE6*0.26
GBMchrX124071161Missense_MutationnovelL791M0.3
GBMchrX124064051Missense_MutationNAE675D0.33
GBMchrX124042629Frame_Shift_DelNAT149Mfs*340.44
GBMchrX124042630SilentNAT149T0.44
GBMchrX124042620Frame_Shift_InsnovelM148Nfs*30.5
GBMchrX124031051Missense_MutationnovelG72S0.37
GBMchrX124025843SilentnovelE16E0.48
GBMchrX124062982Missense_MutationnovelQ573H0.33
GBMchrX124063898Frame_Shift_DelnovelD625Yfs*90.23
GBMchrX124083427Frame_Shift_InsnovelK983Nfs*60.28
HNSCchrX124063161Nonsense_MutationNAQ593*0.22
HNSCchrX124066395Missense_MutationnovelL742I0.12
HNSCchrX124083494Missense_MutationnovelL1000F0.38
HNSCchrX124083543Missense_MutationnovelR1016K0.44
HNSCchrX124061778SilentnovelT514T0.5
HNSCchrX124062967SilentNAA568A0.28
HNSCchrX124063985Frame_Shift_InsnovelR654Nfs*60.07
HNSCchrX124063987Frame_Shift_InsnovelR654Sfs*70.07
HNSCchrX124047473SilentnovelR263R0.16
HNSCchrX124061860Missense_MutationnovelG542W0.15
HNSCchrX124030984SilentnovelG49G0.72
HNSCchrX124025897SilentnovelN34N0.06
KIRCchrX124063932Nonsense_MutationNAY636*0.59
KIRCchrX124061778Frame_Shift_DelNAD515*0.33
KIRCchrX124064025Missense_Mutationrs776905490R667W0.15
KIRCchrX124045304Missense_MutationNAI201M0.22
KIRCchrX124061873Frame_Shift_Delnovel0.54
KIRCchrX124063194Nonsense_MutationNAR604*0.67
KIRCchrX124066420Frame_Shift_DelnovelE750Dfs*310.27
KIRCchrX124045348Missense_MutationNAR216Q0.35
KIRCchrX124083478Frame_Shift_DelnovelL995*0.54
KIRCchrX124050226Missense_MutationNAI312L0.2
KIRPchrX124071254Nonsense_MutationNAQ822*0.93
KIRPchrX124061778Frame_Shift_DelNAD515*0.06
KIRPchrX124056220Frame_Shift_DelnovelE430Dfs*180.35
KIRPchrX124078009Frame_Shift_DelnovelI910Tfs*200.79
KIRPchrX124042619Nonsense_MutationNAR146*0.86
KIRPchrX124050265Frame_Shift_DelnovelN325Tfs*40.37
KIRPchrX124063984Nonsense_MutationNAS653*0.25
KIRPchrX124095443Missense_MutationnovelD1222E0.17
KIRPchrX124068606Nonsense_MutationNAQ770*0.3
LAMLchrX124057978Splice_SiteNAX472_splice0.33
LAMLchrX124090765Splice_SiteNAX1156_splice0.08
LAMLchrX124061284Nonsense_MutationnovelK493*0.1
LGGchrX124045347Nonsense_MutationNAR216*0.72
LGGchrX124045271SilentnovelI190I0.45
LGGchrX124094023Missense_MutationnovelR1158H0.35
LGGchrX124063117Missense_MutationNAY578F0.35
LIHCchrX124049021Missense_MutationnovelD279G0.3
LIHCchrX124042593In_Frame_DelnovelR137_Q140delinsK0.32
LIHCchrX124063190SilentnovelT602T0.32
LIHCchrX124061784SilentNAR516R0.17
LIHCchrX124062995Splice_SitenovelX577_splice0.62
LIHCchrX124057953SilentnovelL464L0.1
LIHCchrX124071224Missense_MutationnovelP812S0.17
LUADchrX124057954Missense_MutationNAV465F0.19
LUADchrX124068645Missense_MutationNAV783F0.3
LUADchrX124077980SilentnovelI899I0.08
LUADchrX124064016Frame_Shift_DelnovelK664Nfs*280.35
LUADchrX124090765Splice_SiteNAX1156_splice0.45
LUADchrX124094040Nonsense_MutationnovelE1164*0.14
LUADchrX124056225Missense_MutationNAL432V0.31
LUADchrX124061858Missense_MutationNAR541K0.36
LUADchrX124083487Missense_MutationNAL997F0.78
LUADchrX124083457Silentrs761983006P987P0.09
LUADchrX124095390Nonsense_MutationNAR1205*0.18
LUADchrX124045248Missense_MutationnovelV183L0.14
LUADchrX124064049Missense_MutationnovelE675Q0.22
LUADchrX124030972Missense_MutationnovelK45N0.24
LUADchrX124056180Missense_MutationNAV417L0.25
LUADchrX124077978Missense_MutationNAI899V0.81
LUADchrX124066176Missense_MutationnovelA700S0.1
LUADchrX124025840Missense_MutationnovelQ15H0.11
LUADchrX124045362Missense_MutationNAL221M0.17
LUADchrX124066387Missense_MutationNAY739C0.23
LUADchrX124071321Missense_MutationnovelA844E0.07
LUADchrX124076371Missense_MutationNAL858P0.06
LUADchrX124063937Missense_MutationnovelH637Q0.25
LUADchrX124086593Nonsense_MutationNAR1034*0.22
LUADchrX124090913Intronnovel0.22
LUSCchrX124066227Frame_Shift_DelnovelT718Lfs*230.45
LUSCchrX124071217Missense_MutationNAM809I0.11
LUSCchrX124071285Missense_MutationNAH832R0.76
LUSCchrX124063884Missense_MutationNAV620L0.38
LUSCchrX124062959Frame_Shift_InsnovelA568Cfs*200.55
LUSCchrX124051219Missense_MutationnovelK372N0.26
LUSCchrX124051220Splice_SitenovelX372_splice0.27
LUSCchrX124090682Missense_MutationNAP1129S0.23
LUSCchrX124063874Missense_MutationnovelI616M0.13
LUSCchrX124071316Missense_MutationnovelN842K0.2
LUSCchrX124090912Intronnovel0.23
LUSCchrX124025854Frame_Shift_InsnovelS22Ffs*30.67
LUSCchrX124062977Missense_MutationNAP572S0.78
LUSCchrX124066404Frame_Shift_InsnovelA746Cfs*20.11
LUSCchrX1240225735'UTRnovel0.3
LUSCchrX124094145Splice_Siters777484689X1198_splice0.23
MESOchrX124047497SilentnovelR271R0.45
MESOchrX124045348Missense_MutationnovelR216L0.6
OVchrX124066240Missense_MutationNAE721V0.12
OVchrX1241007043'UTRnovel0.48
OVchrX124045251Missense_Mutationrs765673108R184W0.31
OVchrX124094145Splice_SiteNAX1198_splice0.33
OVchrX124065873Splice_Regionnovel0.48
PAADchrX124042627Missense_MutationnovelM148I0.07
PAADchrX124047438Missense_MutationnovelE251A0.05
PAADchrX124047454Missense_MutationnovelI256M0.05
PCPGchrX124037556Frame_Shift_InsnovelH108Afs*20.43
PRADchrX124045226SilentnovelF175F0.1
READchrX124090943IntronNA0.51
READchrX124045351Missense_MutationNAH217R0.29
READchrX124031080SilentNAN81N0.15
READchrX124050192Silentrs757136748A300A0.05
SARCchrX124037566Nonsense_MutationNAR110*0.9
SKCMchrX124066189Missense_MutationNAS704L0.34
SKCMchrX124090860Intronnovel0.31
SKCMchrX124037543Frame_Shift_InsnovelE104Dfs*70.34
SKCMchrX124061790SilentnovelE518E0.32
SKCMchrX124094083Missense_MutationNAS1178L0.9
SKCMchrX124071276Missense_MutationNAI829N0.21
SKCMchrX124045290Frame_Shift_DelnovelM197Wfs*280.58
SKCMchrX124047358Missense_MutationNAM224I0.36
SKCMchrX124056172Missense_MutationNAY414F0.24
SKCMchrX124042620Missense_MutationnovelR146Q0.34
SKCMchrX124066178SilentNAA700A0.21
SKCMchrX124061867Missense_MutationNAG544E0.33
SKCMchrX124066224Missense_MutationNAL716V0.26
SKCMchrX124086590Nonsense_MutationNAR1033*0.73
SKCMchrX124065926Silentrs778042166K692K0.76
STADchrX1240225745'UTRnovel0.25
STADchrX124042624Frame_Shift_InsnovelM148Dfs*30.42
STADchrX124086573Missense_MutationNAT1027N0.17
STADchrX124030967Frame_Shift_DelnovelG46Afs*250.18
STADchrX124045223Frame_Shift_DelnovelC176Vfs*70.69
STADchrX124063141Missense_MutationNAT586S0.52
STADchrX124031025Missense_MutationNAP63H0.41
STADchrX124051212Missense_MutationNAR370Q0.64
STADchrX124037577SilentNAA113A0.81
STADchrX124068584SilentNAK762K0.85
STADchrX124037567Missense_MutationnovelR110Q0.82
STADchrX124086656Missense_MutationNAD1055N0.09
STADchrX124071281Missense_MutationNAD831N0.6
STADchrX124086710Missense_MutationnovelK1073E0.13
STADchrX124083456Missense_Mutationrs768937075P987Q0.17
STADchrX124062981Missense_MutationNAQ573R0.17
STADchrX124083532SilentNAR1012R0.1
STADchrX124051180SilentNAE359E0.58
STADchrX124095429Missense_MutationNAA1218T0.42
TGCTchrX124050253Missense_MutationnovelD321Y0.3
THCAchrX124078012Missense_MutationNAI910R0.26
THYMchrX124049076Nonsense_MutationNAY297*0.14
UCECchrX124047461Nonsense_MutationNAR259*0.63
UCECchrX124025885SilentNAI30I0.33
UCECchrX124031054Missense_MutationNAH73Y0.3
UCECchrX124047395Missense_MutationNAL237I0.27
UCECchrX124056144Missense_MutationNAL405I0.32
UCECchrX124095446SilentNAE1223E0.3
UCECchrX1240226035'UTRnovel0.1
UCECchrX124025856Missense_MutationnovelF21I0.12
UCECchrX124063854Missense_MutationnovelD610N0.31
UCECchrX124090864Intronnovel0.26
UCECchrX1241019973'Flanknovel0.17
UCECchrX124057877Missense_Mutationrs777167759R439H0.47
UCECchrX124076457Missense_MutationNAK887E0.3
UCECchrX124037560Missense_MutationnovelH108Y0.24
UCECchrX124042620Missense_MutationnovelR146Q0.42
UCECchrX124056195Missense_MutationnovelR422W0.43
UCECchrX124061817SilentnovelC527C0.29
UCECchrX124076383Missense_MutationNAR862I0.05
UCECchrX124086704Missense_MutationnovelR1071W0.25
UCECchrX124090922Intronnovel0.45
UCECchrX1241024973'Flanknovel0.33
UCECchrX1241022673'Flanknovel0.11
UCECchrX124042639SilentNAF152F0.47
UCECchrX124066223SilentNAL715L0.4
UCECchrX1241006173'UTRnovel0.44
UCECchrX124077987Nonsense_MutationnovelE902*0.38
UCECchrX124086713Missense_MutationnovelK1074Q0.47
UCECchrX124061277Missense_MutationnovelE490D0.45
UCECchrX124090633SilentnovelT1112T0.06
UCECchrX1239607175'Flanknovel0.21
UCECchrX1241015893'Flanknovel0.27
UCECchrX1241018393'Flanknovel0.12
UCECchrX124056219Nonsense_MutationnovelE430*0.28
UCECchrX124066392Missense_MutationnovelI741L0.17
UCECchrX124095419Missense_MutationNAF1214L0.42
UCECchrX124042640Missense_MutationNAD153N0.1
UCECchrX124056144Missense_MutationNAL405I0.22
UCECchrX124076380Missense_MutationNAR861K0.23
UCECchrX124094139Missense_MutationNAD1197N0.15
UCECchrX124063855Missense_MutationNAD610G0.23
UCECchrX124077990Missense_MutationnovelT903S0.37
UCECchrX124061873Missense_MutationnovelR546K0.35
UCECchrX124037559Missense_MutationnovelK107N0.22
UCECchrX124078053Nonsense_MutationnovelQ924*0.13
UCECchrX1241007713'UTRnovel0.22
UCECchrX124064026Missense_Mutationrs369728409R667Q0.05
UCECchrX124065882Nonsense_MutationNAE678*0.23
UCECchrX124083509Nonsense_MutationnovelE1005*0.25
UCECchrX1241011733'Flanknovel0.24
UCECchrX124051212Missense_MutationNAR370Q0.47
UCECchrX1241025483'Flanknovel0.55
UCECchrX124090661Missense_MutationnovelT1122A0.48
UCECchrX124095391Missense_MutationNAR1205Q0.1
UCECchrX1241023073'Flanknovel0.18
UCECchrX1241023083'Flanknovel0.08
UCECchrX124063889SilentnovelE621E0.32
UCECchrX1241009413'Flanknovel0.42
UCECchrX1241019653'Flanknovel0.29
UCECchrX1241021403'Flanknovel0.36
UCECchrX1241026003'Flanknovel0.25
UCECchrX124045292Missense_MutationnovelM197I0.52
UCECchrX124077958Missense_MutationnovelY892C0.34
UCECchrX1241019463'Flanknovel0.36
UCECchrX124062928SilentNAT555T0.2
UCECchrX124037552Missense_MutationNAS105L0.13
UCECchrX124086704Missense_MutationnovelR1071W0.45
UCECchrX1241024713'Flanknovel0.4
UCECchrX124083488Missense_MutationNAA998T0.17
UCECchrX124042634Nonsense_MutationNAE151*0.3
UCECchrX124083494Missense_MutationnovelL1000I0.29
UCECchrX1241011733'Flanknovel0.26
UCECchrX124031052Missense_MutationnovelG72V0.44
UCECchrX124071317Missense_MutationnovelS843G0.06
UCECchrX124090599Missense_MutationnovelS1101N0.4
UCECchrX124095375Missense_MutationnovelP1200S0.44
UCECchrX1241006663'UTRnovel0.49
UCECchrX1241010983'Flanknovel0.42
UCECchrX1241023043'Flanknovel0.27
UCECchrX1241006883'UTRnovel0.15
UCECchrX1241011513'Flanknovel0.26
UCECchrX124050192SilentnovelA300A0.26
UCECchrX124056204Missense_MutationnovelA425T0.5
UCECchrX124050294Missense_MutationnovelW334C0.06
UCECchrX124050191Missense_MutationNAA300V0.44
UCECchrX124057954Missense_MutationNAV465F0.24
UCECchrX124071223SilentNAE811E0.27
UCECchrX124051177Missense_MutationnovelK358N0.3
UCECchrX124051343Missense_MutationnovelK382T0.31
UCECchrX124051345Nonsense_MutationNAE383*0.33
UCECchrX124063962Missense_MutationnovelI646L0.44
UCECchrX124078050Missense_MutationnovelL923M0.37
UCECchrX1241020253'Flanknovel0.14
UCECchrX1239606875'Flanknovel0.63
UCECchrX124025890Missense_MutationnovelG32E0.25
UCECchrX124057958Missense_MutationnovelF466S0.39
UCECchrX124063975Missense_MutationnovelV650A0.34
UCECchrX124083429Missense_MutationnovelI978T0.37
UCECchrX123961855Splice_Regionnovel0.42
UCECchrX124066390Frame_Shift_DelNAV740Efs*90.32
UCECchrX124063152Nonsense_MutationNAQ590*0.32
UCECchrX1241007713'UTRnovel0.13
UCECchrX1241007723'UTRnovel0.13
UCECchrX124083531Missense_MutationNAR1012Q0.16
UCECchrX124086744Missense_MutationnovelV1084A0.19
UCECchrX124094035Missense_MutationnovelL1162R0.17
UCECchrX1241023503'Flanknovel0.14
UCECchrX1241024683'Flanknovel0.17
UCECchrX124094022Missense_MutationNAR1158C0.14
UCECchrX124042639SilentNAF152F0.28
UCECchrX124094031Missense_MutationnovelS1161R0.35
UCECchrX1241009343'Flanknovel0.22
UCECchrX1241013133'Flanknovel0.11
UCECchrX124022638Missense_MutationnovelA4V0.31
UCECchrX124049077Missense_MutationNAR298C0.36
UCECchrX124068615Nonsense_MutationNAQ773*0.36
UCECchrX124090722Missense_MutationnovelY1142C0.29
UCECchrX1241010843'Flanknovel0.48
UCECchrX1241018863'Flanknovel0.44
UCECchrX1239608355'Flanknovel0.45
UCECchrX124047367Missense_MutationnovelM227I0.48
UCECchrX124051362SilentnovelV388V0.29
UCECchrX124063974Missense_MutationnovelV650L0.53
UCECchrX124071159Missense_MutationnovelI790S0.5
UCECchrX1241013953'Flanknovel0.27
UCECchrX1241017673'Flanknovel0.37
UCECchrX124061244SilentnovelY479Y0.05
UCECchrX124025854Missense_MutationnovelH20R0.38
UCECchrX124042619Nonsense_MutationNAR146*0.36
UCECchrX124042640Missense_MutationNAD153N0.43
UCECchrX124081452Nonsense_MutationNAE950*0.07
UCECchrX124063192Missense_MutationnovelG603E0.18
UCECchrX124083431Nonsense_MutationNAE979*0.22
UCECchrX124094037Missense_MutationnovelM1163L0.13
UCECchrX124095397Missense_MutationnovelR1207I0.18
UCECchrX1239618155'UTRnovel0.23
UCECchrX124062958Missense_MutationnovelE565D0.24
UCECchrX1241014673'Flanknovel0.28
UCECchrX124025873SilentnovelD26D0.46
UCECchrX124057955Frame_Shift_DelnovelF467Sfs*30.39
UCECchrX124045283Missense_MutationNAE194D0.29
UCECchrX124057877Missense_Mutationrs777167759R439H0.08
UCECchrX124090681Missense_MutationNAE1128D0.34
UCECchrX1241012003'Flanknovel0.52
UCECchrX124063148SilentnovelL588L0.29
UCECchrX124086690Frame_Shift_DelNAS1068Qfs*370.08
UCECchrX124045301SilentNAV200V0.17
UCECchrX1241007303'UTRnovel0.27
UCECchrX124081452Nonsense_MutationNAE950*0.39
UCECchrX124090616Nonsense_MutationNAE1107*0.28
UCECchrX1241007723'UTRnovel0.5
UCECchrX124061831Missense_MutationNAA532V0.41
UCECchrX124047449Missense_MutationnovelM255V0.28
UCECchrX124077995Missense_MutationnovelM904I0.35
UCECchrX1241015783'Flanknovel0.3
UCECchrX124042619Nonsense_MutationNAR146*0.34
UCECchrX124081461Nonsense_MutationNAR953*0.29
UCECchrX124066376Missense_MutationnovelQ735H0.35
UCECchrX124057954Missense_MutationNAV465F0.41
UCECchrX1241008633'UTRnovel0.45
UCECchrX1241023783'Flanknovel0.37
UCECchrX1239607565'Flanknovel0.23
UCECchrX1241021003'Flanknovel0.37
UCECchrX124095386SilentNAN1203N0.3
UCECchrX124068643Missense_MutationNAT782I0.33
UCECchrX124081444Missense_MutationNAG947A0.28
UCECchrX124095402Nonsense_MutationnovelE1209*0.35
UCECchrX1241017853'Flanknovel0.43
UCSchrX124051345Nonsense_MutationNAE383*0.21

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCAMP0.08330.24013
KIRCAMP0.02840.12739
TGCTDEL0.06670.08422
THCADEL00.21991
UCSDEL0.30360.063955

Survival Analysis
CancerP-value Q-value
KIRC0.00013

Kaplan-Meier Survival Analysis

SARC0.013

Kaplan-Meier Survival Analysis

SKCM0.00015

Kaplan-Meier Survival Analysis

LUSC0.013

Kaplan-Meier Survival Analysis

ESCA0.012

Kaplan-Meier Survival Analysis

TGCT0.039

Kaplan-Meier Survival Analysis

KIRP0.002

Kaplan-Meier Survival Analysis

CESC0.014

Kaplan-Meier Survival Analysis

UCEC0.042

Kaplan-Meier Survival Analysis

GBM0.0018

Kaplan-Meier Survival Analysis

DLBC0.038

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000101972 (Gene tree)
Gene ID
10735
Gene Symbol
STAG2
Alias
SA-2|SCC3B|SA2
Full Name
stromal antigen 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
462,453 bases
Position
chrX:123,960,212-124,422,664
Accession
11355
RBP type
non-canonical RBP
Summary
The protein encoded by this gene is a subunit of the cohesin complex, which regulates the separation of sister chromatids during cell division. Targeted inactivation of this gene results in chromatid cohesion defects and aneuploidy, suggesting that genetic disruption of cohesin is a cause of aneuploidy in human cancer. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2013]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000371160STAG2-2056045XM_017029232ENSP000003602021231 (aa)XP_016884721Q8N3U4
ENST00000371145STAG2-2034393XM_005262359ENSP000003601871268 (aa)XP_005262416Q8N3U4
ENST00000371157STAG2-2045991XM_005262361ENSP000003601991231 (aa)XP_005262418Q8N3U4
ENST00000466748STAG2-214873--- (aa)--
ENST00000218089STAG2-2015218XM_005262357ENSP000002180891268 (aa)XP_005262414Q8N3U4
ENST00000394478STAG2-207676-ENSP00000377988115 (aa)-B1AMT0
ENST00000435103STAG2-209742-ENSP00000405874154 (aa)-B1AMT1
ENST00000458176STAG2-212845-ENSP0000040130958 (aa)-E7ERE6
ENST00000394477STAG2-206385-ENSP0000037798770 (aa)-B1AMS9
ENST00000483575STAG2-218864--- (aa)--
ENST00000471107STAG2-216709--- (aa)--
ENST00000455404STAG2-2112089-ENSP00000397265548 (aa)-B1AMT4
ENST00000371144STAG2-2024281-ENSP000003601861231 (aa)-Q8N3U4
ENST00000435215STAG2-210798-ENSP00000392118207 (aa)-B1AMT3
ENST00000475602STAG2-217356--- (aa)--
ENST00000428941STAG2-208678-ENSP00000415103169 (aa)-B1AMT2
ENST00000469481STAG2-215989--- (aa)--
ENST00000458700STAG2-213296-ENSP0000040555540 (aa)-B1AMS8
Gene Model
Click here to download ENSG00000101972's gene model file
Pathways
Pathway IDPathway NameSource
hsa04110Cell cycleKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000101972Amyotrophic Lateral Sclerosis9.962E-517362836
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000101972's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000775chromosome, centromeric region-TASComponent
GO:0000785chromatin21873635.IBAComponent
GO:0000785chromatin16682347.IDAComponent
GO:0003682chromatin binding21873635.IBAFunction
GO:0005515protein binding15737063.15855230.16682347.17112726.17113138.17349791.17962804.18235444.19629043.20360068.20818333.22885700.23242214.25173175.26496610.30021884.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus9305759.TASComponent
GO:0005654nucleoplasm-TASComponent
GO:0005694chromosome-TASComponent
GO:0005829cytosol-TASComponent
GO:0007062sister chromatid cohesion21873635.IBAProcess
GO:0007062sister chromatid cohesion15917200.IMPProcess
GO:0008278cohesin complex21873635.IBAComponent
GO:0008278cohesin complex11590136.IDAComponent
GO:0016020membrane19946888.HDAComponent
GO:0016363nuclear matrix11590136.IDAComponent
GO:0032876negative regulation of DNA endoreduplication15917200.IMPProcess
GO:0051301cell division-IEAProcess
GO:0051321meiotic cell cycle-IEAProcess
GO:0097431mitotic spindle pole11590136.IDAComponent
GO:1901673regulation of mitotic spindle assembly11590136.IMPProcess
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