EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact
TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
27068524SALL4 expression in gestational trophoblastic tumors: a useful tool to distinguish choriocarcinoma from placental site trophoblastic tumor and epithelioid trophoblastic tumor.Hum Pathol2016 AugStichelbout Mdoi: 10.1016/j.humpath.2016.03.012
24860834Serum SALL4 is a novel prognosis biomarker with tumor recurrence and poor survival of patients in hepatocellular carcinoma.J Immunol Res2014Han SXdoi: 10.1155/2014/262385
17546590Novel approach for detecting global epigenetic alterations associated with tumor cell aneuploidy.Int J Cancer2007 Oct 1Habano W-
23287862Targeting transcription factor SALL4 in acute myeloid leukemia by interrupting its interaction with an epigenetic complex.Blood2013 Feb 21Gao Cdoi: 10.1182/blood-2012-04-424275
25479928ERG and SALL4 expressions in SMARCB1/INI1-deficient tumors: a useful tool for distinguishing epithelioid sarcoma from malignant rhabdoid tumor.Hum Pathol2015 FebKohashi Kdoi: 10.1016/j.humpath.2014.10.010
28887597SALL4 suppresses PTEN expression to promote glioma cell proliferation via PI3K/AKT signaling pathway.J Neurooncol2017 NovLiu Cdoi: 10.1007/s11060-017-2589-3
30431698Correlation between SALL4 stemness marker and bone morphogenetic protein signaling genes in esophageal squamous cell carcinoma.J Biochem Mol Toxicol2019 MarAssarnia Sdoi: 10.1002/jbt.22262
21274508SALL4 is essential for cancer cell proliferation and is overexpressed at early clinical stages in breast cancer.Int J Oncol2011 AprKobayashi Ddoi: 10.3892/ijo.2011.929
28582841Higher expression of SALL4 predicts poor cancer prognosis: A meta-analysis.Cancer Biomark2017 Jul 4Shen Hdoi: 10.3233/CBM-160052.
26779651Expression and clinical significance of SALL4 and β-catenin in colorectal cancer.J Mol Histol2016 AprHao Ldoi: 10.1007/s10735-016-9656-5
26407074SALL4 as an Epithelial-Mesenchymal Transition and Drug Resistance Inducer through the Regulation of c-Myc in Endometrial Cancer.PLoS One2015 Sep 25Liu Ldoi: 10.1371/journal.pone.0138515
25646965Significance of SALL4 as a drugresistant factor in lung cancer.Int J Oncol2015 AprYanagihara Ndoi: 10.3892/ijo.2015.2866
24276240SALL4, a novel marker for human gastric carcinogenesis and metastasis.Oncogene2014 Nov 27Zhang Ldoi: 10.1038/onc.2013.495
23954296Sal-like 4 (SALL4) suppresses CDH1 expression and maintains cell dispersion in basal-like breast cancer.FEBS Lett2013 Sep 17Itou Jdoi: 10.1016/j.febslet.2013.07.049
26238082miR-219-5p plays a tumor suppressive role in colon cancer by targeting oncogene Sall4.Oncol Rep2015 OctCheng Jdoi: 10.3892/or.2015.4168
27323021Effects of siRNA-mediated silencing of Sal-like 4 expression on proliferation and apoptosis of prostate cancer C4-2 cells.Genet Mol Res2016 May 13Liu KFdoi: 10.4238/gmr.15027885.
25919570MicroRNA-33b Inhibits Breast Cancer Metastasis by Targeting HMGA2, SALL4 and Twist1.Sci Rep2015 Apr 28Lin Ydoi: 10.1038/srep09995.
24336327SALL4 is a new target in endometrial cancer.Oncogene2015 Jan 2Li Adoi: 10.1038/onc.2013.529
21725617Overexpression of SALL4 in lung cancer and its importance in cell proliferation.Oncol Rep2011 OctKobayashi Ddoi: 10.3892/or.2011.1374
27773610The Sal-like 4 - integrin α6β1 network promotes cell migration for metastasis via activation of focal adhesion dynamics in basal-like breast cancer cells.Biochim Biophys Acta Mol Cell Res2017 JanItou Jdoi: 10.1016/j.bbamcr.2016.10.012
27938506MicroRNA-98 Plays a Suppressive Role in Non-Small Cell Lung Cancer Through Inhibition of SALL4 Protein Expression.Oncol Res2017 Jul 5Liu Wdoi: 10.3727/096504016X14791726591124

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr2051791892Missense_MutationnovelS197R0.17
BLCAchr2051784322Silentrs555887614G1035G0.2
BLCAchr20517841873'UTRnovel0.45
BLCAchr2051791677Missense_MutationNAS269C0.17
BLCAchr2051784619Missense_MutationNAE936D0.08
BLCAchr20518024335'UTRnovel0.15
BLCAchr2051789130Missense_Mutationrs757391872L825V0.16
BLCAchr2051792036Silentrs147838161A149A0.35
BLCAchr20518024095'UTRnovel0.21
BLCAchr2051802293Missense_MutationNAA39V0.17
BLCAchr2051791940SilentnovelV181V0.45
BLCAchr2051784481SilentNAV982V0.37
BLCAchr2051790103Missense_MutationnovelQ794E0.58
BLCAchr2051790369Missense_MutationnovelS705F0.25
BLCAchr2051784327Missense_MutationnovelD1034N0.24
BRCAchr2051784271SilentNAV1052V0.21
BRCAchr2051791952SilentnovelA177A0.44
BRCAchr2051791191Missense_Mutationrs781349487R431Q0.07
BRCAchr2051790854Silentrs566199071E543E0.39
BRCAchr2051791984Missense_MutationnovelD167Y0.09
BRCAchr20517842533'UTRrs5700700230.24
BRCAchr2051790751Missense_MutationNAQ578E0.16
BRCAchr2051790916Missense_Mutationrs113920122G523R0.09
BRCAchr20517841873'UTRnovel0.3
BRCAchr2051792135Silentrs550786061S116S0.36
BRCAchr2051788964Missense_MutationNAS880L0.11
BRCAchr2051789056Silentrs780919557S849S0.36
BRCAchr2051784444Frame_Shift_Delrs753320334V995Ffs*140.44
BRCAchr2051788909Missense_MutationnovelF898L0.11
BRCAchr2051789040Frame_Shift_DelNAM855*0.21
BRCAchr2051790445Missense_Mutationrs139022152G680S0.2
BRCAchr2051791056Missense_MutationNAP476L0.19
CESCchr2051790681Missense_MutationNAR601Q0.16
CESCchr20517842203'UTRnovel0.19
CESCchr2051802373Missense_Mutationrs777241507I12M0.18
CESCchr2051791698Missense_MutationnovelS262I0.48
CESCchr2051791024Nonsense_MutationNAQ487*0.21
CESCchr2051790349Missense_MutationNAL712F0.37
CHOLchr2051789101SilentNAP834P0.15
COADchr2051790625Missense_MutationNAT620A0.13
COADchr2051791150Missense_MutationNAF445L0.41
COADchr2051791818Missense_MutationNAQ222L0.24
COADchr2051802399Missense_MutationNAR4C0.41
COADchr2051802342Missense_MutationNAP23S0.18
COADchr2051791879Missense_MutationNAP202S0.09
COADchr2051789012Missense_MutationNAR864H0.38
COADchr2051792037Missense_Mutationrs371371697A149V0.1
COADchr2051784396Missense_Mutationrs370661697A1011T0.16
COADchr2051790727Missense_MutationNAR586C0.51
COADchr2051790263Frame_Shift_InsnovelN742*0.36
COADchr2051791950Missense_MutationnovelN178S0.45
COADchr2051792289Missense_MutationnovelR65Q0.82
COADchr2051792290Missense_MutationnovelR65G0.17
COADchr2051784662Missense_Mutationrs755288586A922V0.43
COADchr2051791443Missense_MutationNAP347L0.11
COADchr2051788983Missense_Mutationrs141341062R874W0.34
COADchr2051790037Missense_Mutationrs769138405R816C0.3
COADchr2051790190Missense_MutationNAS765A0.34
COADchr2051791871Silentrs367890518P204P0.11
COADchr2051791372Missense_MutationnovelV371I0.21
COADchr2051788954Silentrs772770482S883S0.13
COADchr2051791490SilentnovelP331P0.31
COADchr2051790040Missense_MutationNAS815G0.21
COADchr2051790493Missense_MutationNAD664Y0.24
COADchr2051791325SilentNAY386Y0.21
COADchr2051791350Missense_MutationNAA378V0.22
COADchr2051791380Missense_Mutationrs770743300A368V0.46
COADchr2051791211SilentNAN424N0.16
COADchr2051791871Frame_Shift_DelNAV205Cfs*350.25
COADchr2051790227SilentNAG752G0.36
COADchr2051790249Missense_Mutationrs202211021R745H0.45
COADchr2051802318Missense_MutationNAA31S0.31
DLBCchr2051791657Missense_MutationnovelS276R0.28
ESCAchr2051789057Missense_Mutationrs747787961S849L0.43
ESCAchr2051784662Missense_Mutationrs755288586A922V0.49
GBMchr2051792181Missense_MutationnovelL101P0.07
GBMchr2051790987Missense_MutationnovelT499R0.13
GBMchr2051788982Frame_Shift_InsnovelR874Qfs*100.1
GBMchr2051788984SilentnovelT873T0.07
GBMchr2051784371Missense_MutationNAS1019C0.25
GBMchr2051791448SilentNAQ345Q0.28
GBMchr2051791895SilentNAR196R0.3
GBMchr2051788964Missense_MutationNAS880L0.49
GBMchr2051790419Silentrs774342189I688I0.5
GBMchr20518024675'UTRnovel0.3
GBMchr2051791758Missense_MutationnovelW242S0.11
GBMchr2051791839Missense_MutationnovelL215P0.29
GBMchr2051789141Missense_MutationnovelG821D0.09
GBMchr2051792290Missense_MutationNAR65W0.21
GBMchr2051784338Missense_MutationnovelP1030Q0.11
GBMchr2051784339Missense_MutationnovelP1030A0.1
GBMchr2051791038Missense_MutationNAS482Y0.21
GBMchr2051791969Missense_Mutationrs747313972A172T0.46
GBMchr2051792138Missense_MutationNAF115L0.24
GBMchr2051784662Missense_Mutationrs755288586A922V0.29
GBMchr2051790971Silentrs138804604P504P0.25
GBMchr2051790503Missense_MutationnovelE660D0.4
GBMchr2051791946SilentnovelT179T0.18
GBMchr2051790970Missense_Mutationrs200920825G505S0.28
GBMchr2051790829Missense_MutationnovelQ552K0.13
GBMchr2051791153Missense_Mutationrs765004478E444K0.26
HNSCchr2051791419Frame_Shift_DelnovelV351Ifs*300.3
HNSCchr2051791183Missense_MutationnovelQ434K0.16
HNSCchr2051791380Missense_Mutationrs770743300A368V0.13
HNSCchr2051790432Missense_MutationnovelH684P0.1
HNSCchr2051802298SilentnovelA37A0.19
HNSCchr2051790874Nonsense_MutationnovelQ537*0.41
KIRCchr2051792323Missense_Mutationrs757354140E54K0.13
KIRCchr20518024725'UTRnovel0.15
KIRCchr2051791376SilentNAV369V0.33
KIRCchr2051788906SilentnovelV899V0.28
KIRCchr2051790261Missense_MutationNAF741S0.2
KIRPchr2051789047SilentNAS852S0.33
KIRPchr2051784467Frame_Shift_DelnovelI987Tfs*30.54
KIRPchr2051791358Missense_MutationNAD375E0.35
LAMLchr2051792309SilentNAE58E0.04
LGGchr2051784493Silentrs369618385G978G0.28
LGGchr2051790253Nonsense_MutationnovelQ744*0.37
LIHCchr2051791847Silentrs750424449P212P0.57
LIHCchr2051792138Frame_Shift_InsnovelS116Lfs*150.4
LIHCchr2051791968Missense_MutationnovelA172G0.19
LIHCchr2051791971Frame_Shift_DelnovelL171*0.19
LIHCchr2051790778Missense_MutationNAL569F0.48
LIHCchr2051790197Missense_MutationnovelD762E0.28
LIHCchr2051792097Missense_MutationNAS129I0.3
LUADchr2051790536Missense_MutationNAM649I0.47
LUADchr20518024585'UTRnovel0.25
LUADchr2051790788SilentnovelP565P0.11
LUADchr2051790320SilentNAT721T0.91
LUADchr2051791404Missense_MutationnovelK360R0.06
LUADchr2051790192Missense_MutationNAS764Y0.28
LUADchr2051791054Missense_MutationnovelV477L0.2
LUADchr2051791464Missense_MutationNAG340D0.06
LUADchr2051791308Missense_MutationNAG392V0.11
LUADchr2051792284Missense_Mutationrs765869556R67C0.22
LUADchr2051791253SilentNAF410F0.09
LUADchr2051784656Missense_MutationnovelN924S0.23
LUADchr2051788861Missense_MutationNAK914N0.1
LUADchr2051792082Missense_MutationnovelR134M0.23
LUADchr2051784456Nonsense_MutationnovelQ991*0.23
LUADchr2051791221Missense_MutationnovelT421I0.2
LUADchr2051784591Nonsense_MutationnovelG946*0.27
LUADchr2051791121SilentnovelG454G0.09
LUADchr2051791526SilentnovelG319G0.13
LUADchr20517842013'UTRnovel0.21
LUADchr2051790422SilentnovelV687V0.19
LUADchr2051791038Missense_MutationnovelS482C0.09
LUADchr2051791096Missense_Mutationrs770056012D463H0.14
LUADchr2051789102Missense_MutationNAP834L0.19
LUADchr2051791879Missense_MutationNAP202S0.33
LUADchr2051791597Missense_MutationNAH296Y0.66
LUADchr2051792317Missense_MutationNAA56S0.25
LUADchr2051792270SilentnovelT71T0.2
LUADchr2051791269Missense_MutationNAT405N0.19
LUADchr2051790836SilentnovelL549L0.07
LUADchr2051790509SilentnovelL658L0.1
LUADchr2051790516Missense_MutationNAT656M0.08
LUADchr2051791884Missense_MutationnovelA200G0.05
LUADchr2051791152Missense_MutationNAE444V0.39
LUSCchr2051791153Missense_Mutationrs765004478E444K0.19
LUSCchr2051784622Silentrs146025163I935I0.51
LUSCchr2051791186Missense_MutationnovelP433S0.12
LUSCchr2051791789Missense_MutationnovelT232A0.22
LUSCchr2051791474Missense_MutationnovelQ337E0.72
LUSCchr2051791424SilentnovelL353L0.08
LUSCchr2051784520Missense_MutationNAW969C0.49
LUSCchr2051791685Frame_Shift_DelnovelQ266Hfs*240.19
LUSCchr2051790970Missense_Mutationrs200920825G505S0.12
LUSCchr2051784453Missense_MutationNAS992R0.55
LUSCchr2051792313In_Frame_DelnovelS57del0.32
LUSCchr2051791558Missense_MutationNAG309W0.35
LUSCchr2051784274SilentnovelA1051A0.45
LUSCchr2051790285Missense_MutationNAP733L0.42
LUSCchr2051790286Missense_MutationNAP733S0.43
LUSCchr2051790916Missense_Mutationrs113920122G523R0.37
LUSCchr2051792041Frame_Shift_DelnovelD148Mfs*80.41
LUSCchr20517842613'UTRnovel0.17
LUSCchr2051791324Missense_MutationnovelC387R0.39
LUSCchr2051791473Missense_MutationnovelQ337P0.2
MESOchr2051791629Missense_MutationnovelS285F0.29
OVchr2051792321SilentnovelE54E0.23
OVchr2051791867Missense_MutationnovelP206T0.27
OVchr2051792320Missense_MutationnovelV55L0.15
OVchr2051790829Nonsense_MutationnovelL551_Q552delins*0.12
OVchr2051791763Missense_MutationnovelN240K0.44
OVchr2051792156SilentnovelP109P0.04
OVchr2051791527Missense_MutationnovelG319E0.19
OVchr2051790875Missense_MutationNAF536L0.39
OVchr2051791956Missense_MutationnovelV176E0.07
OVchr2051789076Missense_MutationnovelG843S0.34
OVchr2051790172Missense_MutationNAE771K0.21
OVchr2051791854Missense_MutationnovelS210I0.08
OVchr2051789131Missense_MutationNAS824R0.53
OVchr2051791717Missense_MutationnovelT256S0.26
OVchr2051784444Frame_Shift_Delrs753320334V995Ffs*140.66
OVchr2051792242Missense_MutationnovelF81L0.08
OVchr2051791841SilentnovelV214V0.07
OVchr2051791911Missense_MutationnovelV191E0.1
OVchr2051791848Missense_MutationNAP212Q0.31
OVchr2051791783Missense_MutationnovelQ234E0.32
PAADchr2051790097Missense_MutationnovelE796K0.19
PAADchr2051790273Missense_MutationnovelG737D0.09
PAADchr2051792271Missense_Mutationrs374255657T71M0.23
PCPGchr2051790771Missense_MutationnovelC571Y0.46
PRADchr2051784492Missense_Mutationrs779372301G979S0.12
PRADchr2051790716Silentrs201329321T589T0.28
PRADchr2051791721Silentrs141546409A254A0.33
PRADchr2051784537Missense_MutationnovelV964M0.42
PRADchr2051791236Missense_MutationnovelG416D0.43
READchr2051802289SilentNAA40A0.43
READchr2051791794Missense_MutationnovelQ230R0.17
READchr2051784280Missense_MutationNAK1049N0.39
READchr2051791801Missense_MutationnovelQ228E0.21
READchr20517840543'UTRnovel0.54
SKCMchr2051791308Missense_MutationNAG392E0.34
SKCMchr2051790683SilentNAG600G0.48
SKCMchr2051790817Frame_Shift_DelnovelE556Rfs*200.3
SKCMchr2051790345Missense_MutationnovelP713L0.44
SKCMchr2051791832SilentnovelQ217Q0.16
SKCMchr2051790817Missense_MutationNAE556K0.19
SKCMchr2051791274SilentnovelS403S0.2
SKCMchr20517842603'UTRnovel0.29
SKCMchr2051784675Nonsense_MutationnovelY917_M918insLSVLFP*VHY0.04
SKCMchr2051791477Missense_MutationNAP336S0.43
SKCMchr2051791056Missense_MutationNAP476L0.47
SKCMchr2051791786Missense_MutationnovelE233K0.33
SKCMchr2051791850SilentnovelI211I0.08
SKCMchr2051791400SilentnovelG361G0.18
SKCMchr2051791011Missense_Mutationrs141604488S491L0.25
SKCMchr20517841533'UTRnovel0.21
SKCMchr2051790261Missense_MutationnovelF741Y0.23
SKCMchr2051784683Missense_MutationnovelV915A0.29
SKCMchr2051791849Missense_MutationnovelP212S0.35
SKCMchr2051792011Missense_MutationNAE158K0.57
SKCMchr2051791253SilentNAF410F0.21
SKCMchr2051784425Missense_MutationNAS1001F0.25
SKCMchr2051791491Missense_MutationNAP331L0.18
SKCMchr2051791296Missense_Mutationrs756467626S396F0.32
SKCMchr2051790244Missense_MutationNAG747S0.48
SKCMchr2051792342SilentNAV47V0.33
SKCMchr2051792177SilentNAI102I0.54
SKCMchr2051791615Missense_MutationNAK290E0.2
SKCMchr2051792009SilentnovelE158E0.36
SKCMchr2051790869SilentnovelG538G0.19
SKCMchr2051790369Missense_MutationnovelS705F0.1
SKCMchr2051784441Missense_MutationNAP996S0.28
SKCMchr2051802285Missense_Mutationrs200440024E42K0.42
SKCMchr2051791375Missense_MutationNAD370N0.1
SKCMchr2051791521Missense_Mutationrs373872511R321Q0.24
SKCMchr2051791038Missense_MutationNAS482F0.46
SKCMchr2051790297Missense_Mutationrs753135483S729F0.13
SKCMchr2051790138Missense_MutationnovelT782I0.29
SKCMchr2051791754SilentnovelA243A0.18
SKCMchr2051784621Missense_Mutationrs771797918E936K0.32
SKCMchr2051784556Silentrs763706687I957I0.41
SKCMchr2051788992Missense_MutationnovelG871S0.41
SKCMchr2051790410SilentNAI691I0.25
SKCMchr2051784441Missense_MutationNAP996S0.35
SKCMchr2051790370Missense_MutationNAS705T0.38
SKCMchr2051790959SilentnovelQ508Q0.19
SKCMchr2051802382SilentNAP9P0.08
SKCMchr2051790369Missense_MutationnovelS705F0.31
SKCMchr2051792161Missense_MutationnovelG108R0.3
SKCMchr2051802380Missense_MutationNAQ10L0.48
SKCMchr2051792339SilentnovelN48N0.37
SKCMchr2051791546Missense_MutationNAF313L0.59
SKCMchr20518024315'UTRrs3691712530.39
SKCMchr2051790271Missense_MutationNAP738S0.55
SKCMchr2051792190Missense_MutationnovelP98L0.24
SKCMchr2051791040SilentnovelT481T0.21
SKCMchr2051790522Missense_MutationNAP654L0.44
SKCMchr2051790270Missense_MutationNAP738L0.34
SKCMchr2051791253SilentNAF410F0.46
SKCMchr20517841923'UTRnovel0.31
SKCMchr2051792284Missense_Mutationrs765869556R67C0.4
STADchr2051791346SilentNAL379L0.05
STADchr2051790354Missense_Mutationrs761020459T710M0.47
STADchr2051791428Missense_Mutationrs754206289A352V0.19
STADchr2051784444Frame_Shift_Delrs753320334V995Ffs*140.32
STADchr2051791192Nonsense_MutationNAR431*0.1
STADchr2051790332SilentNAS717S0.28
STADchr2051791252Missense_MutationNAV411M0.08
STADchr2051784444Frame_Shift_Delrs753320334V995Ffs*140.39
STADchr2051790189Missense_MutationnovelS765L0.35
STADchr2051788939Silentrs11698418H888H0.2
STADchr20518024165'UTRnovel0.17
STADchr2051791110Missense_MutationNAA458V0.06
STADchr2051784444Frame_Shift_Delrs753320334V995Ffs*140.35
STADchr2051791396Missense_Mutationrs759061679P363S0.23
STADchr2051791487Silentrs137963401S332S0.67
STADchr2051792299Missense_Mutationrs767807086T62A0.14
STADchr2051792073Missense_MutationNAG137D0.21
STADchr2051790255Missense_MutationNAL743P0.1
STADchr2051802352SilentNAG19G0.09
STADchr2051784397Silentrs748658171N1010N0.26
STADchr2051790344SilentnovelP713P0.29
STADchr2051791341Missense_MutationNAK381T0.14
STADchr2051791033Missense_MutationnovelG484W0.05
STADchr2051791534Missense_MutationNAP317S0.4
STADchr2051790108Missense_Mutationrs779778006N792S0.57
STADchr2051784483Missense_Mutationrs778170676V982M0.37
STADchr2051784444Frame_Shift_Delrs753320334V995Ffs*140.46
STADchr2051790087Missense_MutationNAK799R0.08
STADchr2051784408Missense_MutationnovelV1007I0.3
STADchr2051790286Missense_MutationNAP733T0.24
STADchr2051784443Frame_Shift_Insrs765680621V995Gfs*160.4
STADchr2051791382Silentrs773682459S367S0.17
STADchr2051789057Missense_Mutationrs747787961S849L0.22
STADchr20517841313'UTRnovel0.23
STADchr2051790634SilentNAR617R0.19
STADchr2051791908Missense_MutationNAA192V0.21
STADchr2051792301Missense_MutationNAA61V0.07
TGCTchr2051791656Missense_MutationnovelS276N0.11
UCECchr2051790418Missense_MutationNAE689K0.39
UCECchr2051792281Missense_Mutationrs202087308R68W0.42
UCECchr2051791191Missense_Mutationrs781349487R431Q0.28
UCECchr2051791636Missense_MutationNAG283C0.21
UCECchr2051790351Missense_MutationnovelP711H0.33
UCECchr2051790503Missense_MutationNAE660D0.45
UCECchr2051791191Missense_Mutationrs781349487R431Q0.3
UCECchr2051791461Missense_MutationNAS341L0.4
UCECchr2051791310Missense_MutationNAF391L0.38
UCECchr2051791133Silentrs768322315A450A0.33
UCECchr2051790419Silentrs774342189I688I0.4
UCECchr2051790547Missense_MutationNAR646W0.42zf-C2H2
UCECchr2051792072Silentrs201560082G137G0.52
UCECchr2051791381Missense_MutationNAA368T0.12
UCECchr2051789137SilentNAR822R0.19
UCECchr2051784444Frame_Shift_Delrs753320334V995Ffs*140.36
UCECchr2051791026Missense_MutationnovelP486H0.12
UCECchr2051792210Missense_MutationnovelK91N0.47
UCECchr2051788953Missense_Mutationrs769292363A884T0.16
UCECchr2051790333Missense_MutationNAS717L0.24
UCECchr2051791310Frame_Shift_DelnovelF391Lfs*450.38
UCECchr2051784451SilentNAS992S0.48
UCECchr2051791038Missense_MutationNAS482Y0.17
UCECchr2051791891Missense_Mutationrs543674194A198T0.3
UCECchr2051784641Missense_Mutationrs200956651R929H0.5
UCECchr2051790057Missense_MutationNAA809V0.6
UCECchr2051791381Missense_MutationNAA368T0.24
UCECchr2051791382Silentrs773682459S367S0.28
UCECchr2051791987Frame_Shift_Delrs797044509Q166Rfs*30.38
UCECchr2051790248SilentnovelR745R0.47
UCECchr2051791011Missense_Mutationrs141604488S491L0.17
UCECchr2051791403SilentnovelK360K0.2
UCECchr2051784444Frame_Shift_Delrs753320334V995Ffs*140.38
UCECchr2051791961SilentnovelG174G0.52
UCECchr2051792042Silentrs529358559P147P0.41
UCECchr2051790834Missense_MutationnovelK550T0.56
UCECchr2051791498Missense_MutationNAR329S0.29
UCECchr2051791987Frame_Shift_Delrs797044509Q166Rfs*30.3
UCECchr2051790562Missense_MutationnovelL641M0.41zf-C2H2
UCECchr2051790784Missense_MutationnovelE567K0.45
UCECchr2051792136Missense_Mutationrs755344745S116F0.61
UCECchr2051792323Missense_Mutationrs757354140E54K0.5
UCECchr2051789139Missense_MutationNAR822W0.41
UCECchr2051790871Missense_MutationNAG538W0.32
UCECchr2051790339Missense_MutationnovelI715N0.28
UCECchr2051791816Nonsense_MutationnovelQ223*0.19
UCECchr2051784444Frame_Shift_Delrs753320334V995Ffs*140.58
UCECchr2051784444Frame_Shift_Delrs753320334V995Ffs*140.35
UCECchr2051790097Missense_MutationnovelE796K0.41
UCECchr2051792036Silentrs147838161A149A0.42
UCECchr2051791153Missense_Mutationrs765004478E444K0.16
UCECchr2051791776Missense_MutationNAR236H0.33
UCECchr2051790036Missense_Mutationrs747560279R816H0.4
UCECchr2051790515Silentrs371853419T656T0.45
UCECchr2051784300Missense_MutationnovelH1043Y0.34
UCECchr2051791352SilentNAA377A0.39
UCECchr2051784444Frame_Shift_Delrs753320334V995Ffs*140.47
UCECchr2051784275Missense_MutationnovelA1051E0.4
UCECchr2051788966Missense_MutationnovelF879L0.49
UCECchr2051791428Missense_Mutationrs754206289A352V0.33
UCECchr2051790020Splice_SitenovelX821_splice0.39
UCECchr2051791621Missense_MutationnovelA288T0.48
UCECchr2051784491Missense_MutationNAG979D0.08
UCECchr2051791352SilentNAA377A0.21
UCECchr2051791392Missense_MutationNAP364L0.4
UCECchr2051791003Missense_MutationnovelN494D0.19
UCECchr2051790362Silentrs754151224K707K0.35
UCECchr2051784443Frame_Shift_Insrs765680621V995Gfs*160.38
UCECchr2051791279Missense_Mutationrs751089738R402C0.35
UCECchr2051790250Missense_Mutationrs111502708R745C0.5
UCECchr2051784444Frame_Shift_Delrs753320334V995Ffs*140.3
UCECchr2051788887Missense_MutationNAA906T0.3
UCECchr2051789106Missense_MutationNAP833S0.36
UCECchr2051784285Missense_MutationnovelN1048D0.08
UCECchr2051791396Missense_Mutationrs759061679P363S0.34
UCECchr2051790826Nonsense_MutationnovelQ553*0.33
UCECchr2051791555SilentnovelL310L0.33
UCECchr2051790245Missense_MutationnovelQ746H0.4
UCECchr2051792177SilentNAI102I0.36
UCECchr2051792138Missense_MutationNAF115L0.31
UCECchr2051784369Missense_MutationnovelQ1020K0.2
UCECchr2051790215Silentrs145078336S756S0.18
UCECchr2051790399Missense_MutationnovelE695A0.18
UCECchr2051790770Nonsense_MutationnovelC571*0.26
UCECchr2051790920SilentnovelL521L0.19
UCECchr2051791278Missense_Mutationrs145735478R402H0.14
UCECchr2051791706SilentnovelT259T0.1
UCECchr2051792315Silentrs370634519A56A0.19
UCECchr2051792258Missense_MutationnovelE75D0.41
UCECchr2051790774Missense_MutationnovelI570N0.35
UCECchr2051790546Missense_MutationnovelR646Q0.1zf-C2H2
UCECchr2051790766Nonsense_MutationnovelR573*0.13
UCECchr2051791697SilentnovelS262S0.46
UCECchr2051791122Missense_MutationnovelG454D0.38
UCECchr2051791586SilentnovelI299I0.25
UCECchr2051790529Nonsense_Mutationrs74315424Q652*0.48
UCSchr2051791108Missense_MutationnovelL459F0.29

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
LAMLDEL0.01050.14746
PRADAMP0.05280.07085

Survival Analysis
CancerP-value Q-value
KIRC0.00013

Kaplan-Meier Survival Analysis

STAD0.02

Kaplan-Meier Survival Analysis

SARC0.00059

Kaplan-Meier Survival Analysis

HNSC0.041

Kaplan-Meier Survival Analysis

PRAD0.024

Kaplan-Meier Survival Analysis

KIRP0.00063

Kaplan-Meier Survival Analysis

PAAD0.018

Kaplan-Meier Survival Analysis

LAML0.026

Kaplan-Meier Survival Analysis

UCEC0.00041

Kaplan-Meier Survival Analysis

LGG0.00011

Kaplan-Meier Survival Analysis

THCA0.00027

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000101115 (Gene tree)
Gene ID
57167
Gene Symbol
SALL4
Alias
dJ1112F19.1|ZNF797
Full Name
spalt like transcription factor 4
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
130,915 bases
Position
chr20:51,782,331-51,913,245
Accession
15924
RBP type
canonical RBP
Summary
This gene encodes a zinc finger transcription factor thought to play a role in the development of abducens motor neurons. Defects in this gene are a cause of Duane-radial ray syndrome (DRRS). Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2015]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000217086zf-C2H2PF00096.264.2e-2716
ENSP00000217086zf-C2H2PF00096.264.2e-2726
ENSP00000217086zf-C2H2PF00096.264.2e-2736
ENSP00000217086zf-C2H2PF00096.264.2e-2746
ENSP00000217086zf-C2H2PF00096.264.2e-2756
ENSP00000217086zf-C2H2PF00096.264.2e-2766
ENSP00000360594zf-C2H2PF00096.268.3e-1212
ENSP00000360594zf-C2H2PF00096.268.3e-1222
ENSP00000379319zf-C2H2PF00096.269.4e-0912
ENSP00000379319zf-C2H2PF00096.269.4e-0922
ENSP00000217086zf-metPF12874.71e-0911

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
30196987Expression of RNA-binding protein LIN28 in classic gastric hepatoid carcinomas, gastric fetal type gastrointestinal adenocarcinomas, and hepatocellular carcinomas: An immunohistochemical study with comparison to SALL4, alpha-fetoprotein, glypican-3, and Hep Par1.Pathol Res Pract2018 OctZhao Mdoi: 10.1016/j.prp.2018.07.037
27797380DNA demethylation induces SALL4 gene re-expression in subgroups of hepatocellular carcinoma associated with Hepatitis B or C virus infection.Oncogene2017 Apr 27Fan Hdoi: 10.1038/onc.2016.399
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000481363SALL4-204605--- (aa)--
ENST00000217086SALL4-2015208XM_005260467ENSP000002170861053 (aa)XP_005260524Q9UJQ4
ENST00000395997SALL4-2031918-ENSP00000379319616 (aa)-Q9UJQ4
ENST00000483130SALL4-205782--- (aa)--
ENST00000371539SALL4-2021151-ENSP00000360594276 (aa)-Q6Y8G5
Gene Model
Click here to download ENSG00000101115's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000101115Myocardial Infarction6.6149326E-004-
ENSG00000101115Cleft Lip6E-828232668
ENSG00000101115Cleft Palate6E-828232668
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000101115rs61263442051790963CNonsyndromic cleft lip with cleft palate28232668[NR]1.1764705HP_0000175|EFO_0003959
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000101115's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000101115SALL410053.333ENSAPOG00000002465sall410044.221Acanthochromis_polyacanthus
ENSG00000101115SALL493100.000ENSAMEG00000013250-10087.051Ailuropoda_melanoleuca
ENSG00000101115SALL410059.615ENSACIG00000017298sall410042.907Amphilophus_citrinellus
ENSG00000101115SALL410053.333ENSAOCG00000023678sall410044.000Amphiprion_ocellaris
ENSG00000101115SALL410053.333ENSAPEG00000000751sall410044.000Amphiprion_percula
ENSG00000101115SALL49167.308ENSATEG00000024480sall410043.336Anabas_testudineus
ENSG00000101115SALL410066.667ENSAPLG00000006498SALL410057.456Anas_platyrhynchos
ENSG00000101115SALL410064.372ENSACAG00000012748SALL410055.916Anolis_carolinensis
ENSG00000101115SALL410097.464ENSANAG00000023352SALL410097.464Aotus_nancymaae
ENSG00000101115SALL410059.615ENSACLG00000017851sall410043.975Astatotilapia_calliptera
ENSG00000101115SALL49953.333ENSAMXG00000001254sall49945.909Astyanax_mexicanus
ENSG00000101115SALL49396.000ENSBTAG00000003101SALL410079.793Bos_taurus
ENSG00000101115SALL48496.567ENSCJAG00000000591SALL49995.745Callithrix_jacchus
ENSG00000101115SALL410090.517ENSCAFG00000011738-10086.837Canis_familiaris
ENSG00000101115SALL410090.517ENSCAFG00020021870SALL410086.742Canis_lupus_dingo
ENSG00000101115SALL410096.000ENSCHIG00000026270SALL410078.518Capra_hircus
ENSG00000101115SALL410091.845ENSTSYG00000007359SALL410090.580Carlito_syrichta
ENSG00000101115SALL49986.207ENSCAPG00000012135SALL49780.864Cavia_aperea
ENSG00000101115SALL410085.870ENSCPOG00000036300-10085.870Cavia_porcellus
ENSG00000101115SALL410089.079ENSCCAG00000029512-10089.352Cebus_capucinus
ENSG00000101115SALL410098.712ENSCATG00000030757SALL410098.551Cercocebus_atys
ENSG00000101115SALL410088.043ENSCLAG00000010479SALL410088.043Chinchilla_lanigera
ENSG00000101115SALL410098.712ENSCSAG00000015269SALL410097.911Chlorocebus_sabaeus
ENSG00000101115SALL410067.078ENSCPBG00000014995SALL49959.349Chrysemys_picta_bellii
ENSG00000101115SALL410097.854ENSCANG00000036463SALL410097.626Colobus_angolensis_palliatus
ENSG00000101115SALL410078.632ENSCGRG00001019569Sall410076.087Cricetulus_griseus_chok1gshd
ENSG00000101115SALL410078.632ENSCGRG00000000462Sall410085.185Cricetulus_griseus_crigri
ENSG00000101115SALL410059.615ENSCSEG00000014604sall410044.803Cynoglossus_semilaevis
ENSG00000101115SALL410049.383ENSCVAG00000010815sall410044.454Cyprinodon_variegatus
ENSG00000101115SALL49953.333ENSDARG00000044485sall49944.974Danio_rerio
ENSG00000101115SALL410087.660ENSDNOG00000040633SALL410087.512Dasypus_novemcinctus
ENSG00000101115SALL410081.223ENSDORG00000012841Sall410085.714Dipodomys_ordii
ENSG00000101115SALL48480.851ENSETEG00000012475-6678.595Echinops_telfairi
ENSG00000101115SALL410089.394ENSECAG00000018533SALL410089.394Equus_caballus
ENSG00000101115SALL49995.455ENSEEUG00000003649SALL49981.611Erinaceus_europaeus
ENSG00000101115SALL410059.615ENSELUG00000005696sall410044.331Esox_lucius
ENSG00000101115SALL410089.270ENSFCAG00000002822SALL410088.406Felis_catus
ENSG00000101115SALL410062.963ENSFALG00000013149SALL410057.055Ficedula_albicollis
ENSG00000101115SALL410087.681ENSFDAG00000017812SALL410087.681Fukomys_damarensis
ENSG00000101115SALL48567.308ENSFHEG00000014187sall410044.638Fundulus_heteroclitus
ENSG00000101115SALL49267.308ENSGMOG00000003822sall410042.807Gadus_morhua
ENSG00000101115SALL410066.255ENSGALG00000041365SALL49958.202Gallus_gallus
ENSG00000101115SALL410053.333ENSGAFG00000019925sall410044.080Gambusia_affinis
ENSG00000101115SALL49067.308ENSGACG00000011124sall410042.623Gasterosteus_aculeatus
ENSG00000101115SALL410067.901ENSGAGG00000002297SALL410057.293Gopherus_agassizii
ENSG00000101115SALL410099.638ENSGGOG00000001832SALL410099.638Gorilla_gorilla
ENSG00000101115SALL410059.615ENSHBUG00000007327sall410043.783Haplochromis_burtoni
ENSG00000101115SALL49390.086ENSHGLG00000009043SALL49684.684Heterocephalus_glaber_female
ENSG00000101115SALL49390.086ENSHGLG00100002722SALL49684.585Heterocephalus_glaber_male
ENSG00000101115SALL410059.615ENSHCOG00000008519sall410043.646Hippocampus_comes
ENSG00000101115SALL49959.615ENSIPUG00000019170sall49945.934Ictalurus_punctatus
ENSG00000101115SALL410085.599ENSSTOG00000025002SALL410092.958Ictidomys_tridecemlineatus
ENSG00000101115SALL410085.776ENSJJAG00000020688Sall49997.183Jaculus_jaculus
ENSG00000101115SALL410053.333ENSKMAG00000002501sall410044.309Kryptolebias_marmoratus
ENSG00000101115SALL410053.333ENSLBEG00000019951sall410044.444Labrus_bergylta
ENSG00000101115SALL49448.138ENSLACG00000013898SALL410060.106Latimeria_chalumnae
ENSG00000101115SALL410059.615ENSLOCG00000002427sall410047.871Lepisosteus_oculatus
ENSG00000101115SALL410090.517ENSLAFG00000004309SALL410086.944Loxodonta_africana
ENSG00000101115SALL410098.712ENSMFAG00000027169SALL410098.006Macaca_fascicularis
ENSG00000101115SALL410098.707ENSMMUG00000003870SALL410098.551Macaca_mulatta
ENSG00000101115SALL410098.551ENSMNEG00000035995SALL410098.551Macaca_nemestrina
ENSG00000101115SALL410098.283ENSMLEG00000030467SALL410097.911Mandrillus_leucophaeus
ENSG00000101115SALL410053.333ENSMAMG00000005223sall410044.204Mastacembelus_armatus
ENSG00000101115SALL410059.615ENSMZEG00005023418sall410043.975Maylandia_zebra
ENSG00000101115SALL47965.385ENSMGAG00000009344SALL49965.385Meleagris_gallopavo
ENSG00000101115SALL410078.879ENSMAUG00000015814Sall410078.313Mesocricetus_auratus
ENSG00000101115SALL410092.241ENSMICG00000000027SALL410090.942Microcebus_murinus
ENSG00000101115SALL410083.761ENSMOCG00000018245Sall410091.781Microtus_ochrogaster
ENSG00000101115SALL49067.308ENSMMOG00000014929sall410044.248Mola_mola
ENSG00000101115SALL410070.124ENSMODG00000016387SALL49762.206Monodelphis_domestica
ENSG00000101115SALL410053.333ENSMALG00000018709sall410043.805Monopterus_albus
ENSG00000101115SALL410078.571MGP_CAROLIEiJ_G0024723Sall410095.833Mus_caroli
ENSG00000101115SALL410078.333ENSMUSG00000027547Sall410095.833Mus_musculus
ENSG00000101115SALL410075.200MGP_PahariEiJ_G0026164Sall410095.833Mus_pahari
ENSG00000101115SALL410078.151MGP_SPRETEiJ_G0025643Sall410095.833Mus_spretus
ENSG00000101115SALL410090.517ENSMPUG00000017543SALL49686.038Mustela_putorius_furo
ENSG00000101115SALL49684.995ENSMLUG00000007060-10084.995Myotis_lucifugus
ENSG00000101115SALL410078.879ENSMLUG00000008405-10075.545Myotis_lucifugus
ENSG00000101115SALL49192.000ENSMLUG00000028073-9962.595Myotis_lucifugus
ENSG00000101115SALL410087.607ENSNGAG00000017833Sall410082.671Nannospalax_galili
ENSG00000101115SALL410059.615ENSNBRG00000001829sall410043.849Neolamprologus_brichardi
ENSG00000101115SALL410097.911ENSNLEG00000007013SALL410097.911Nomascus_leucogenys
ENSG00000101115SALL48365.385ENSMEUG00000005793-10065.385Notamacropus_eugenii
ENSG00000101115SALL410090.638ENSOPRG00000011640SALL410082.674Ochotona_princeps
ENSG00000101115SALL410059.615ENSONIG00000016557sall410043.700Oreochromis_niloticus
ENSG00000101115SALL410072.803ENSOANG00000008667SALL49762.979Ornithorhynchus_anatinus
ENSG00000101115SALL49682.891ENSOCUG00000011797SALL410082.891Oryctolagus_cuniculus
ENSG00000101115SALL410053.333ENSORLG00000016130sall410043.700Oryzias_latipes
ENSG00000101115SALL49167.308ENSORLG00020007339sall410043.662Oryzias_latipes_hni
ENSG00000101115SALL410053.333ENSORLG00015002265sall410043.761Oryzias_latipes_hsok
ENSG00000101115SALL410053.333ENSOMEG00000017344sall410043.284Oryzias_melastigma
ENSG00000101115SALL49489.107ENSOGAG00000013799SALL410089.107Otolemur_garnettii
ENSG00000101115SALL410080.687ENSOARG00000014570SALL410073.699Ovis_aries
ENSG00000101115SALL410099.638ENSPPAG00000038064SALL410099.638Pan_paniscus
ENSG00000101115SALL410089.270ENSPPRG00000008677SALL410088.406Panthera_pardus
ENSG00000101115SALL410099.638ENSPTRG00000013631SALL410099.638Pan_troglodytes
ENSG00000101115SALL410098.551ENSPANG00000021792SALL410098.551Papio_anubis
ENSG00000101115SALL410053.498ENSPKIG00000007074sall410044.755Paramormyrops_kingsleyae
ENSG00000101115SALL410066.803ENSPSIG00000009066SALL410057.243Pelodiscus_sinensis
ENSG00000101115SALL410053.333ENSPMGG00000022551sall410043.202Periophthalmus_magnuspinnatus
ENSG00000101115SALL410084.615ENSPEMG00000022706Sall410097.222Peromyscus_maniculatus_bairdii
ENSG00000101115SALL410070.539ENSPCIG00000022838SALL49760.758Phascolarctos_cinereus
ENSG00000101115SALL48667.308ENSPFOG00000001442sall410044.310Poecilia_formosa
ENSG00000101115SALL48667.308ENSPLAG00000008760sall410044.224Poecilia_latipinna
ENSG00000101115SALL48667.308ENSPMEG00000008497sall410044.340Poecilia_mexicana
ENSG00000101115SALL48667.308ENSPREG00000021140sall410044.252Poecilia_reticulata
ENSG00000101115SALL410097.911ENSPPYG00000011138SALL410097.911Pongo_abelii
ENSG00000101115SALL410081.439ENSPCAG00000004726SALL49981.439Procavia_capensis
ENSG00000101115SALL410094.828ENSPCOG00000016321SALL410093.478Propithecus_coquereli
ENSG00000101115SALL49485.873ENSPVAG00000002075SALL49486.075Pteropus_vampyrus
ENSG00000101115SALL410059.615ENSPNYG00000021738sall410043.734Pundamilia_nyererei
ENSG00000101115SALL49953.333ENSPNAG00000020929sall49945.113Pygocentrus_nattereri
ENSG00000101115SALL4