EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
27477906ZMYND8 Reads the Dual Histone Mark H3K4me1-H3K14ac to Antagonize the Expression of Metastasis-Linked Genes.Mol Cell2016 Aug 4Li Ndoi: 10.1016/j.molcel.2016.06.035
28432260Dual histone reader ZMYND8 inhibits cancer cell invasion by positively regulating epithelial genes.Biochem J2017 May 19Basu Mdoi: 10.1042/BCJ20170223.
25117453Zinc finger MYND-type containing 8 promotes tumour angiogenesis via induction of vascular endothelial growth factor-A expression.FEBS Lett2014 Sep 17Kuroyanagi Jdoi: 10.1016/j.febslet.2014.07.033

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr2047236497SilentnovelI875I0.47
ACCchr2047347872Missense_MutationnovelI3M0.31
BLCAchr2047221460Nonsense_MutationnovelQ1071*0.64
BLCAchr2047238929Missense_MutationnovelP812T0.1
BLCAchr2047224380Missense_MutationNAY1045H0.21
BLCAchr2047239090Missense_Mutationrs780491504P758L0.06
BLCAchr2047246187Nonsense_MutationnovelS682*0.46
BLCAchr2047221407SilentNAG1088G0.36
BLCAchr2047319078Intronnovel0.27
BLCAchr2047276717Missense_MutationnovelF339L0.14
BLCAchr2047283613SilentNAL260L0.13
BLCAchr2047298775Missense_MutationNAR116I0.62
BLCAchr2047291807Missense_MutationnovelT197A0.52
BLCAchr2047298929Missense_MutationnovelP65S0.2
BLCAchr2047291837Nonsense_MutationnovelE187*0.26
BLCAchr2047276530Missense_MutationNAD402H0.25
BLCAchr2047283637Missense_MutationnovelI252M0.08
BLCAchr2047294764Missense_MutationNAE137K0.29
BLCAchr2047221463Nonsense_MutationNAQ1070*0.21
BLCAchr2047246303Missense_MutationNAE643D0.22
BLCAchr2047224501SilentNAI1004I0.34
BLCAchr2047347861Missense_MutationNAS7F0.36
BLCAchr2047276742Missense_MutationnovelS331C0.16
BLCAchr2047236395SilentnovelV909V0.05
BRCAchr20473566995'Flanknovel0.25
BRCAchr2047262341Missense_Mutationrs143023321T503M0.37
BRCAchr2047238988Missense_MutationNAP792L0.24
BRCAchr2047276758Missense_MutationnovelK326E0.05
BRCAchr2047227221Missense_MutationNAE980K0.24
BRCAchr2047246328Frame_Shift_DelNAK635Sfs*140.14
BRCAchr20472104973'UTRnovel0.38
BRCAchr2047236399Missense_MutationNAS908L0.13
BRCAchr2047249368Missense_MutationNAL545F0.18
BRCAchr2047238942SilentNAP807P0.24
BRCAchr2047249436Missense_MutationnovelR522Q0.07
BRCAchr2047310171Missense_MutationNAR20I0.23
BRCAchr2047236353Silentrs149945102A923A0.41
BRCAchr2047262367Missense_MutationNAF494L0.2
BRCAchr2047246328Frame_Shift_DelNAK635Sfs*140.08
CESCchr2047227221Missense_MutationNAE980K0.44
CESCchr2047224452Missense_MutationNAE1021K0.37
CESCchr2047310153Missense_MutationnovelP26Q0.08
CESCchr20472097433'UTRnovel0.22
CESCchr2047246423In_Frame_InsnovelI603delinsMA0.07
CESCchr2047246425Frame_Shift_InsnovelI603Ffs*50.03
CESCchr2047224385Missense_MutationnovelT1043I0.07
CESCchr2047294764Missense_MutationNAE137Q0.24
CESCchr2047318978IntronNA0.66
CESCchr2047239066Missense_MutationnovelS766F0.05
CHOLchr20472102673'UTRnovel0.37
COADchr20472106653'UTRnovel0.46
COADchr2047224409Missense_MutationNAA1035V0.44
COADchr2047246171Missense_MutationNAK687N0.38
COADchr2047276367Missense_Mutationrs748590284S456L0.22
COADchr2047249397Missense_MutationNAS535L0.26
COADchr2047236480Missense_Mutationrs373435522T881M0.19
COADchr2047246512Missense_MutationnovelN574H0.35
COADchr2047227217Missense_MutationnovelM981T0.04
COADchr2047276674Missense_Mutationrs746337186R354C0.41
COADchr20473567325'Flanknovel0.24
COADchr20473566945'Flanknovel0.28
COADchr2047246099Silentrs141781562S711S0.33
COADchr2047224536Missense_Mutationrs541703317R993W0.15
COADchr2047246328Frame_Shift_DelNAK635Sfs*140.17
COADchr2047238666Intronnovel0.28
COADchr2047246284Frame_Shift_DelNAS650Afs*370.3
COADchr2047224498SilentnovelA1005A0.09
COADchr2047220325Splice_SiteNAX1120_splice0.22
COADchr2047238837Missense_MutationnovelQ842H0.38
COADchr2047238838Missense_MutationnovelQ842R0.35
COADchr2047276569Missense_MutationnovelA389T0.16
COADchr2047276629Missense_MutationnovelY369H0.05
COADchr2047236352Missense_Mutationrs371544404A924T0.37
COADchr2047276576Silentrs375904065A386A0.32
COADchr2047239114Missense_MutationnovelT750M0.45
COADchr2047276453Silentrs112232405S427S0.38
COADchr2047227221Missense_MutationNAE980K0.29
COADchr2047276409Missense_MutationNAT442M0.12
COADchr2047246173Missense_MutationNAK687Q0.29
COADchr2047246195SilentNAA679A0.1
COADchr2047224424Missense_MutationNAN1030I0.53
COADchr2047246098Missense_Mutationrs772025610E712K0.25
COADchr2047290270Missense_Mutationrs762314721A202V0.49
COADchr2047212652IntronNA0.5
COADchr2047224428Missense_MutationNAA1029T0.5
ESCAchr20472098603'UTRnovel0.2
ESCAchr2047238339Intronnovel0.25
ESCAchr2047294702SilentnovelL157L0.11
ESCAchr2047236488SilentnovelS878S0.11
GBMchr2047236457Missense_MutationnovelS889G0.33
GBMchr2047246312Missense_MutationnovelN640K0.07
GBMchr2047276479Frame_Shift_InsnovelG419Rfs*330.07
GBMchr2047229761Missense_MutationnovelL948I0.14
GBMchr2047249396Silentrs111541617S535S0.35
GBMchr2047210815Frame_Shift_DelnovelS1170Afs*520.25
GBMchr2047291829SilentnovelI189I0.04
GBMchr2047262400Frame_Shift_DelnovelA484Qfs*330.08
GBMchr20472106743'UTRnovel0.25
GBMchr2047227268Missense_MutationnovelR964M0.12
GBMchr2047238834Missense_MutationnovelQ843H0.29
GBMchr2047246155Frame_Shift_InsnovelK693Gfs*240.04
GBMchr2047239089Silentrs770713974P758P0.19
HNSCchr2047236399Missense_MutationNAS908L0.11
HNSCchr2047210810Missense_MutationnovelT1171M0.12
HNSCchr2047246267Silentrs771468548S655S0.16
HNSCchr2047298907Missense_MutationnovelP72L0.37
HNSCchr2047239012Missense_Mutationrs369116353T784M0.28
HNSCchr2047298906SilentnovelP72P0.1
HNSCchr2047246204Silentrs143651717S676S0.14
KIRCchr2047224443Missense_MutationNAK1024E0.26
KIRCchr2047224417SilentnovelK1032K0.21
KIRPchr2047249373Missense_MutationnovelV543G0.31
LAMLchr2047276569Missense_MutationnovelA389T0.03
LAMLchr2047212709Intronnovel0.14
LIHCchr2047276552SilentnovelQ394Q0.26
LIHCchr2047291835SilentNAE187E0.38
LUADchr2047298865Missense_MutationnovelR86P0.18
LUADchr20473567055'Flanknovel0.16
LUADchr2047224349Missense_MutationnovelW1055L0.23
LUADchr2047283603Frame_Shift_DelnovelQ264Kfs*220.19
LUADchr2047291875Missense_MutationNAQ174L0.12
LUADchr2047221396Missense_MutationNAS1092I0.31
LUADchr2047283616Frame_Shift_DelnovelC255*0.08
LUADchr2047276472Missense_MutationNAG421V0.11
LUADchr2047290249Missense_MutationNAC209F0.13
LUADchr2047224546Missense_Mutationrs529642788M989I0.2
LUADchr2047236510Missense_MutationnovelQ871L0.29
LUADchr2047246257Missense_MutationnovelD659Y0.47
LUADchr20473566885'Flanknovel0.09
LUADchr2047291846Missense_MutationNAD184Y0.59
LUADchr2047276330Silentrs778893637F468F0.2
LUADchr2047283637Silentrs768524845I252I0.23
LUADchr2047246275Missense_MutationNAP653A0.22
LUADchr2047276664Missense_MutationnovelF357C0.43
LUSCchr2047347872SilentNAI3I0.15
LUSCchr2047236476SilentNAS882S0.34
LUSCchr2047276320Missense_MutationNAS472G0.64
LUSCchr20472106423'UTRnovel0.13
LUSCchr2047236392Silentrs779785588N910N0.1
LUSCchr2047246448Missense_MutationnovelS595L0.11
LUSCchr2047276537SilentnovelL399L0.16
LUSCchr2047276760Missense_MutationnovelS325C0.21
LUSCchr2047224341Missense_MutationnovelH1058Y0.12
LUSCchr2047238698Intronnovel0.31
LUSCchr2047276314Missense_MutationNAA474S0.41
LUSCchr2047236437SilentnovelL895L0.9
LUSCchr2047298845Frame_Shift_DelnovelV93Ffs*230.39
LUSCchr2047229806Frame_Shift_InsnovelM933Pfs*70.09
LUSCchr2047239115Missense_MutationnovelT750S0.04
MESOchr2047276757Missense_MutationNAK326R0.57
OVchr2047319059Intronnovel0.14
OVchr2047210859Frame_Shift_InsnovelD1155Pfs*680.03
OVchr2047262418SilentNAA477A0.48
OVchr2047262399Missense_MutationNAA484T0.66
OVchr2047318944Intronnovel0.16
OVchr2047224357Missense_MutationnovelQ1052H0.05
OVchr2047224359Missense_MutationnovelQ1052K0.04
OVchr2047276466Missense_Mutationrs568551781R423Q0.09
OVchr2047224338Missense_MutationnovelM1059L0.09
OVchr2047224543Silentrs778041374A990A0.55
OVchr2047318852Intronnovel0.63
OVchr20472105333'UTRnovel0.14
PAADchr2047210832Missense_Mutationrs750833798D1164N0.1
PAADchr2047221344Silentrs762469626T1109T0.19
PAADchr2047227278Missense_Mutationrs749035523R961C0.15
PAADchr2047238882Silentrs190889041T827T0.17
PAADchr2047246171Missense_MutationNAK687N0.08
PAADchr2047291867Missense_MutationNAV177I0.04
PCPGchr2047282126Missense_MutationNAA305V0.07
PCPGchr2047282127Missense_MutationnovelA305T0.07
READchr2047287259Silentrs376502713A238A0.27
READchr2047210879Missense_MutationNAK1148T0.23
READchr2047246502Missense_Mutationrs760696325S577L0.04
READchr2047221412Nonsense_MutationNAQ1087*0.11
READchr20472107233'UTRnovel0.38
READchr2047290263Missense_MutationnovelK204N0.31
SARCchr2047238783SilentnovelR860R0.39
SARCchr2047282139Missense_MutationnovelG301R0.36
SARCchr2047262412SilentnovelT479T0.27
SARCchr2047282156Missense_MutationnovelA295D0.08
SKCMchr2047249287Missense_MutationnovelG572S0.18
SKCMchr2047239005Silentrs771098315T786T0.47
SKCMchr2047246149Missense_MutationnovelE695K0.07
SKCMchr2047210801Missense_MutationNAL1174R0.15
SKCMchr2047246137Missense_MutationNAP699S0.42
SKCMchr2047239093Missense_MutationnovelP757L0.28
SKCMchr2047239094Missense_MutationnovelP757S0.28
SKCMchr2047236339Missense_MutationNAK928M0.16
SKCMchr2047239086Missense_MutationNAE759D0.21
SKCMchr2047298839Missense_MutationNAH95Y0.24
SKCMchr2047287285Splice_SiteNAX230_splice0.27
SKCMchr2047224459Silentrs745982385A1018A0.08
SKCMchr2047298878Missense_MutationNAP82S0.28
SKCMchr2047319110Intronnovel0.53
SKCMchr2047221398Silentrs778498926S1091S0.35
SKCMchr2047236465Missense_MutationnovelL886Q0.33
SKCMchr2047276460Missense_Mutationrs370213736S425F0.17
SKCMchr2047246296Missense_MutationNAE646K0.23
SKCMchr2047224501SilentNAI1004I0.24
SKCMchr2047221432Frame_Shift_DelnovelE1080Nfs*40.25
SKCMchr2047246466Missense_Mutationrs779100956S589L0.45
SKCMchr2047249437Nonsense_MutationNAR522*0.21
SKCMchr2047294709Missense_MutationNAS155F0.07
SKCMchr20472107323'UTRnovel0.38
SKCMchr2047239124Missense_MutationNAP747S0.48
SKCMchr2047221416SilentNAS1085S0.4
SKCMchr20472106253'UTRnovel0.53
SKCMchr2047224390Nonsense_MutationNAW1041*0.23
SKCMchr2047239124Missense_MutationNAP747S0.1
SKCMchr2047262319SilentnovelS510S0.44
SKCMchr2047298928Missense_MutationNAP65L0.18
SKCMchr20472106453'UTRnovel0.25
SKCMchr2047276462SilentnovelI424I0.25
STADchr2047282204Missense_MutationnovelP279L0.08
STADchr2047246328Frame_Shift_DelNAK635Sfs*140.17
STADchr2047246481Missense_MutationNAV584A0.23
STADchr2047318996Intronrs3729584130.24
STADchr2047224463Missense_MutationNAQ1017R0.17
STADchr2047224544Missense_MutationNAA990V0.23
STADchr2047239008SilentNAV785V0.08
STADchr2047246492SilentNAV580V0.08
STADchr2047236480Missense_Mutationrs373435522T881M0.32
STADchr2047246062Missense_Mutationrs369749556R724W0.18
STADchr2047246328Frame_Shift_DelNAK635Sfs*140.22
STADchr2047283600Missense_MutationNAK265Q0.4
STADchr2047276577Missense_MutationnovelA386V0.05
STADchr2047246328Frame_Shift_DelNAK635Sfs*140.19
STADchr2047262286Splice_SitenovelX521_splice0.33
STADchr2047238984Silentrs765241161A793A0.39
STADchr2047249409Missense_MutationNAE531V0.42
STADchr2047262358Silentrs769763992Q497Q0.2
STADchr20472107113'UTRrs3751129620.04
STADchr2047238951Silentrs768512649P804P0.22
STADchr2047246328Frame_Shift_DelNAK635Sfs*140.42
STADchr20472107603'UTRnovel0.06
STADchr2047221452SilentNAA1073A0.11
STADchr2047246098Missense_Mutationrs772025610E712K0.32
STADchr2047276352Missense_MutationNAA461V0.13
STADchr2047246046Frame_Shift_DelnovelN729Ifs*150.11
STADchr2047283581Missense_MutationNAC271Y0.08
STADchr2047291867Missense_MutationNAV177I0.15
STADchr2047224327Nonsense_MutationNAC1062*0.25
STADchr2047246328Frame_Shift_DelNAK635Sfs*140.12
STADchr20472107103'UTRrs3707345920.12
STADchr2047282126Missense_MutationNAA305V0.06
STADchr2047294721Missense_Mutationrs373916187I151T0.47
TGCTchr2047276318Missense_MutationnovelS472R0.27
TGCTchr2047246120SilentnovelG704G0.17
THCAchr2047262385Silentrs773877846S488S0.06
UCECchr2047246328Frame_Shift_DelNAK635Sfs*140.47
UCECchr20472103973'UTRnovel0.42
UCECchr2047238986Missense_MutationnovelA793T0.14
UCECchr20473566675'Flanknovel0.36
UCECchr2047249343Missense_MutationNAR553P0.36
UCECchr2047282122SilentNAR306R0.42
UCECchr2047210813Missense_MutationNAS1170N0.31
UCECchr2047224428Missense_MutationNAA1029T0.45
UCECchr2047246328Frame_Shift_DelNAK635Sfs*140.2
UCECchr2047262341Missense_Mutationrs143023321T503M0.08
UCECchr2047276526Missense_MutationnovelM403T0.11
UCECchr20472106183'UTRrs5615094190.37
UCECchr2047283600Missense_MutationNAK265E0.26
UCECchr2047238658Intronnovel0.56
UCECchr2047282114Missense_MutationnovelG309V0.38
UCECchr2047290187Missense_Mutationrs112503437G230R0.41
UCECchr2047238977Nonsense_MutationnovelG796*0.39
UCECchr2047298860Missense_MutationNAD88Y0.4
UCECchr20472098263'UTRrs1883825310.48
UCECchr2047236355Missense_MutationnovelA923T0.47
UCECchr2047238912Silentrs779642631V817V0.44
UCECchr2047310098Missense_MutationnovelK44N0.34
UCECchr2047212667Intronrs7685622220.04
UCECchr2047282102Missense_MutationNAR313M0.13
UCECchr2047238339Intronnovel0.36
UCECchr2047238986Missense_MutationnovelA793T0.33
UCECchr2047246481Missense_MutationNAV584A0.19
UCECchr2047298765SilentnovelS119S0.12
UCECchr2047298732SilentNAC130C0.13
UCECchr2047310131Silentrs550379713S33S0.43
UCECchr2047291886In_Frame_InsnovelT170_D171insLYIGK0.08
UCECchr2047276347Missense_MutationnovelE463K0.31
UCECchr20472101513'UTRrs60121350.4
UCECchr20472105573'UTRnovel0.46
UCECchr2047221364Missense_Mutationrs143716806A1103T0.38
UCECchr2047236438Missense_MutationnovelL895Q0.39
UCECchr2047239024Missense_Mutationrs761740673S780N0.18
UCECchr2047220295Silentrs768047560T1129T0.29
UCECchr2047236391Missense_Mutationrs757483496A911T0.32
UCECchr2047246327Frame_Shift_Insrs776813452P636Afs*100.42
UCECchr2047276686Missense_MutationNAV350M0.41
UCECchr2047246328Frame_Shift_DelNAK635Sfs*140.31
UCECchr2047276673Missense_MutationnovelR354H0.46
UCECchr2047246340Missense_MutationNAA631V0.34
UCECchr2047221471Missense_MutationnovelT1067N0.38
UCECchr2047290275Splice_SiteNAX201_splice0.26
UCECchr2047310099Frame_Shift_DelnovelK44Rfs*80.33
UCECchr2047210810Missense_MutationnovelT1171K0.42
UCECchr2047221396Missense_MutationNAS1092N0.19
UCECchr2047236324Splice_SiteNAX932_splice0.32
UCECchr2047249352Missense_MutationNAR550H0.14
UCECchr2047236391Missense_Mutationrs757483496A911T0.16
UCECchr2047238424Intronnovel0.16
UCECchr2047238703Intronnovel0.11
UCECchr2047290269Silentrs141430390A202A0.22
UCECchr2047246099Silentrs141781562S711S0.43
UCECchr2047246280Missense_Mutationrs367967090T651M0.34
UCECchr2047238863Missense_MutationNAM834V0.5
UCECchr2047238951Silentrs768512649P804P0.39
UCECchr2047227221Missense_MutationNAE980K0.39
UCECchr2047348028Intronnovel0.46
UCECchr20472099653'UTRnovel0.34
UCECchr2047238355Intronnovel0.28
UCECchr2047249436Missense_MutationnovelR522Q0.47
UCECchr2047319062Intronnovel0.7
UCECchr2047239090Missense_Mutationrs780491504P758L0.28
UCECchr2047246328Frame_Shift_DelNAK635Sfs*140.37
UCECchr2047298928Missense_MutationNAP65L0.08
UCECchr2047246328Frame_Shift_DelNAK635Sfs*140.47
UCECchr2047227221Missense_MutationNAE980K0.24
UCECchr2047210767Nonsense_MutationnovelW1185*0.24
UCECchr2047224428Missense_MutationNAA1029T0.28
UCECchr2047298756Missense_MutationnovelE122D0.36
UCECchr2047310059Missense_MutationnovelE57D0.12
UCECchr20473567175'Flanknovel0.05
UCECchr2047238553Intronnovel0.44
UCECchr2047246328Frame_Shift_DelNAK635Sfs*140.28
UCECchr2047246486Silentrs535541680T582T0.48
UCECchr2047238460Intronnovel0.31
UCECchr20472102133'UTRnovel0.35
UCECchr2047220292SilentnovelP1130P0.35
UCECchr2047246413Frame_Shift_InsnovelE607*0.04
UCECchr2047246415Nonsense_MutationnovelD606Afs*70.04
UCECchr2047227283Splice_SitenovelX960_splice0.36
UCECchr2047224550Missense_MutationnovelT988I0.23
UCECchr2047236500Missense_MutationNAE874D0.13
UCECchr2047262377Missense_MutationNAP491L0.11
UCECchr2047246171Missense_MutationNAK687N0.04
UCECchr2047224500Missense_Mutationrs367618268A1005T0.15
UCECchr2047224501SilentNAI1004I0.16
UCECchr2047229800Missense_MutationnovelD935N0.29
UCECchr2047236428SilentnovelS898S0.14
UCECchr2047249402Silentrs373193167S533S0.13
UCECchr2047290275Splice_SitenovelX201_splice0.16
UCECchr2047298829Missense_MutationnovelG98V0.11
UCECchr20473478955'UTRnovel0.21
UCECchr2047246328Frame_Shift_DelNAK635Sfs*140.16
UCECchr2047294767Missense_MutationnovelA136T0.29
UCECchr2047318944Intronrs7811664790.25
UCECchr2047210887SilentNAR1145R0.1
UCECchr2047246086Missense_MutationNAD716Y0.29
UCECchr2047246378Missense_MutationNAE618D0.27
UCECchr2047291867Missense_MutationNAV177I0.3
UCECchr2047249285Splice_SiteNAX572_splice0.36
UCECchr2047287268Silentrs139817127T235T0.36
UCECchr2047298865Missense_MutationnovelR86Q0.29
UCECchr2047221422SilentnovelN1083N0.32
UCECchr2047282131SilentnovelV303V0.41
UCECchr20473479125'UTRnovel0.26
UCSchr2047224488Missense_MutationnovelK1009E0.34

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
LAMLDEL0.02090.14746
LUADDEL0.10850.18308
PRADAMP0.05080.07085
UCECAMP0.23012.4177e-07

Survival Analysis
CancerP-value Q-value
THYM0.022

Kaplan-Meier Survival Analysis

KIRC0.00012

Kaplan-Meier Survival Analysis

MESO0.028

Kaplan-Meier Survival Analysis

ACC0.0098

Kaplan-Meier Survival Analysis

UCS0.028

Kaplan-Meier Survival Analysis

BRCA0.0099

Kaplan-Meier Survival Analysis

ESCA0.008

Kaplan-Meier Survival Analysis

BLCA0.0042

Kaplan-Meier Survival Analysis

LIHC0.0007

Kaplan-Meier Survival Analysis

DLBC0.023

Kaplan-Meier Survival Analysis

LGG0.0001

Kaplan-Meier Survival Analysis

UVM0.0016

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000101040 (Gene tree)
Gene ID
23613
Gene Symbol
ZMYND8
Alias
RACK7|PRKCBP1
Full Name
zinc finger MYND-type containing 8
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
147,676 bases
Position
chr20:47,209,214-47,356,889
Accession
9397
RBP type
non-canonical RBP
Summary
The protein encoded by this gene is a receptor for activated C-kinase (RACK) protein. The encoded protein has been shown to bind in vitro to activated protein kinase C beta I. In addition, this protein is a cutaneous T-cell lymphoma-associated antigen. Finally, the protein contains a bromodomain and two zinc fingers, and is thought to be a transcriptional regulator. Multiple transcript variants encoding several different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000262975ZMYND8-2014139XM_017027775ENSP000002629751168 (aa)XP_016883264Q9ULU4
ENST00000352431ZMYND8-2033832XM_017027760ENSP000003355371160 (aa)XP_016883249Q9ULU4
ENST00000396281ZMYND8-2075511XM_011528749ENSP000003795771186 (aa)XP_011527051Q9ULU4
ENST00000441977ZMYND8-209175-ENSP0000039380624 (aa)-Q5TH07
ENST00000540497ZMYND8-2183405-ENSP000004430861134 (aa)-Q9ULU4
ENST00000446894ZMYND8-210341-ENSP0000039437942 (aa)-Q5TH08
ENST00000360911ZMYND8-2054991XM_017027765ENSP000003541661135 (aa)XP_016883254Q9ULU4
ENST00000435836ZMYND8-208670-ENSP00000413727175 (aa)-Q5TH12
ENST00000355972ZMYND8-2045542XM_011528753ENSP000003482461214 (aa)XP_011527055Q9ULU4
ENST00000611941ZMYND8-2195090XM_017027779ENSP000004820481087 (aa)XP_016883268A0A087WYS3
ENST00000471951ZMYND8-2164053XM_005260362ENSP000004200951234 (aa)XP_005260419Q9ULU4
ENST00000311275ZMYND8-2025362XM_005260366ENSP000003122371186 (aa)XP_005260423Q9ULU4
ENST00000458360ZMYND8-2123729XM_017027780ENSP000003929641054 (aa)XP_016883269Q9ULU4
ENST00000372023ZMYND8-2065144-ENSP000003610931105 (aa)-Q9ULU4
ENST00000461685ZMYND8-2133567-ENSP000004182101188 (aa)-Q9ULU4
ENST00000468376ZMYND8-2154064--- (aa)--
ENST00000536340ZMYND8-2175273XM_005260356ENSP000004398001241 (aa)XP_005260413Q9ULU4
ENST00000617418ZMYND8-2203411-ENSP000004798061136 (aa)-A0A087WVZ6
ENST00000467200ZMYND8-2143634XM_017027774ENSP000004184951095 (aa)XP_016883263H7C4X9
ENST00000619049ZMYND8-2214027-ENSP00000479197767 (aa)-A0A087WV57
ENST00000446994ZMYND8-2115471XM_005260358ENSP000003967251214 (aa)XP_005260415Q9ULU4
Gene Model
Click here to download ENSG00000101040's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000101040Asthma9.434312E-0611022011
ENSG00000101040Coronary Disease1.2510000E-005-
ENSG00000101040Platelet Function Tests4.3000000E-007-
ENSG00000101040Platelet Function Tests4.2900000E-006-
ENSG00000101040Platelet Function Tests1.6007200E-005-
ENSG00000101040Platelet Function Tests1.7432400E-005-
ENSG00000101040Child Development Disorders, Pervasive4.0000000E-005-
ENSG00000101040Osteoarthritis2E-1023989986
ENSG00000101040Migraine Disorders4E-827182965
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000101040rs177263372047315915CMean platelet volume27863252[0.069-0.107] unit decrease0.08812654EFO_0004584
ENSG00000101040rs60630852047211814ADepressive symptoms (MTAG)29292387[0.0085-0.0171] unit increase0.0128EFO_0007006
ENSG00000101040rs60630852047211814ASubjective well-being (MTAG)29292387[0.0088-0.0162] unit decrease0.0125EFO_0007869
ENSG00000101040rs9101872047212407?Migraine27182965[1.029-1.061]1.045EFO_0003821
ENSG00000101040rs578081072047232164?Plasma factor VII activating protease levels30070759[60.14-142.86] unit increase101.5EFO_0009368
ENSG00000101040rs9101872047212407ANeuroticism30643256[0.0067-0.0128] unit decrease0.009757282EFO_0007660
ENSG00000101040rs9101872047212407ADepressive symptoms30643256[0.0043-0.0082] unit decrease0.006215197EFO_0007006
ENSG00000101040rs9101872047212407?Neuroticism30595370EFO_0007660
ENSG00000101040rs9101872047212407AWell-being spectrum (multivariate analysis)30643256[0.0045-0.0082] unit decrease0.006336388EFO_0007869
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000101040's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000101040ZMYND810096.000ENSMUSG00000039671Zmynd89992.569Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003714transcription corepressor activity27477906.IMPFunction
GO:0003714transcription corepressor activity-ISSFunction
GO:0005515protein binding15095401.16147992.28966017.IPIFunction
GO:0005634nucleus27477906.28966017.IDAComponent
GO:0005634nucleus-ISSComponent
GO:0005737cytoplasm28966017.IMPComponent
GO:0006355regulation of transcription, DNA-templated-IEAProcess
GO:0008270zinc ion binding28966017.IDAFunction
GO:0019904protein domain specific binding28966017.IDAFunction
GO:0030336negative regulation of cell migration27477906.IMPProcess
GO:0035064methylated histone binding27477906.IDAFunction
GO:0043197dendritic spine-IEAComponent
GO:0043198dendritic shaft-IEAComponent
GO:0047485protein N-terminus binding-IEAFunction
GO:0051491positive regulation of filopodium assembly-IEAProcess
GO:0060999positive regulation of dendritic spine development-IEAProcess
GO:0070491repressing transcription factor binding-ISSFunction
GO:0070577lysine-acetylated histone binding27477906.IDAFunction
GO:0098815modulation of excitatory postsynaptic potential-IEAProcess
GO:1902897regulation of postsynaptic density protein 95 clustering-IEAProcess
GO:1902952positive regulation of dendritic spine maintenance-IEAProcess
GO:1903507negative regulation of nucleic acid-templated transcription-IEAProcess
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