EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact
TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
27748896Identification of a novel transcript isoform of the TTLL12 gene in human cancers.Oncol Rep2016 DecWen Rdoi: 10.3892/or.2016.5135

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr2243174518Missense_MutationNAS339A0.37
BLCAchr2243183134Missense_MutationnovelE65K0.16
BLCAchr2243183086Missense_MutationnovelE81K0.12
BLCAchr2243169657Intronnovel0.43
BLCAchr2243174524Missense_MutationnovelN337H0.56
BLCAchr2243179860SilentnovelL229L0.15
BLCAchr2243173757Missense_MutationnovelK433N0.29
BLCAchr2243179727Silentrs773107251Y244Y0.29
BLCAchr2243174548Missense_MutationNAE329K0.24
BRCAchr2243172483SilentnovelI471I0.37
BRCAchr2243173732Nonsense_Mutationrs767704612R442*0.31
BRCAchr2243168152SilentnovelR597R0.21
BRCAchr22431679643'UTRnovel0.13
BRCAchr22431673233'UTRnovel0.21
CESCchr2243180739Splice_Regionrs7726163250.5
CESCchr2243179740Missense_Mutationrs759732112R240Q0.36
CESCchr2243169915Intronnovel0.38
CESCchr2243174570Silentrs766644678P321P0.19
CESCchr22431675163'UTRnovel0.5
CESCchr2243169556Missense_MutationNAE530Q0.68
CESCchr2243169509Silentrs199507307T545T0.15
CESCchr2243179705Missense_Mutationrs767983108R252W0.1
COADchr2243172485Missense_MutationNAI471V0.33
COADchr22431673443'UTRnovel0.33
COADchr2243179947SilentnovelR200R0.35
COADchr2243183121Missense_MutationnovelI69T0.09
COADchr2243180887Missense_MutationnovelQ134R0.18
COADchr2243174242Missense_MutationNAQ399R0.47
COADchr2243180933Missense_Mutationrs745511521L119F0.24
COADchr2243180803Missense_MutationnovelA162V0.1
COADchr2243174379Silentrs768212577G353G0.55
COADchr2243168841Silentrs781032496C572C0.3
COADchr2243180896Missense_Mutationrs771565831A131V0.17
COADchr2243179980Silentrs139884471P189P0.36
COADchr2243183141SilentnovelD62D0.3
COADchr2243180858Missense_MutationnovelR144C0.13
COADchr2243179948Missense_Mutationrs148175933R200Q0.29
COADchr2243174606Silentrs778999708T309T0.24
COADchr2243180767Missense_MutationnovelN174S0.24
COADchr2243169510Missense_Mutationrs138428335T545M0.1
COADchr2243168145Nonsense_Mutationrs755655409Q600*0.15
COADchr22431670773'UTRnovel0.4
COADchr2243179963Missense_MutationnovelD195G0.2
COADchr2243172407Missense_MutationNAN497D0.35
GBMchr2243179866Nonsense_MutationNAW227*0.29
GBMchr2243174219Missense_Mutationrs763918205R407W0.28
GBMchr2243176366Missense_MutationnovelP291S0.35
GBMchr2243183003SilentnovelG108G0.16
GBMchr2243172422Missense_MutationnovelW492G0.07
HNSCchr2243169669Intronnovel0.43
HNSCchr2243169670Intronnovel0.43
HNSCchr2243179701Missense_MutationnovelK253R0.27
HNSCchr2243180765Nonsense_MutationnovelQ175*0.38
HNSCchr2243180829Missense_MutationnovelF153L0.16
KICHchr2243169500Splice_RegionnovelQ548Q0.16
KIRPchr2243183129In_Frame_DelnovelD62_V66del0.16
LAMLchr2243169582Intronnovel1
LAMLchr2243171836Missense_MutationnovelD520N0.08
LGGchr22431672033'UTRrs1999861760.23
LGGchr2243172464Missense_Mutationrs11554504R478W0.1
LGGchr2243180893Missense_MutationnovelR132H0.43
LIHCchr2243174524Missense_MutationNAN337Y0.5
LIHCchr2243179631Silentrs745511557A276A0.45
LUADchr2243168112Missense_MutationNAD611N0.22
LUADchr2243180784SilentNAE168E0.35
LUSCchr2243179725Missense_MutationnovelG245E0.07
LUSCchr2243168140Silentrs142420296P601P0.39
LUSCchr2243179982Missense_MutationNAP189S0.11
LUSCchr22431678823'UTRnovel0.25
MESOchr2243168787Missense_MutationnovelD590E0.6
MESOchr22431674723'UTRnovel1
OVchr2243174511Missense_MutationNAF341C0.25
OVchr2243171850Missense_MutationnovelM515K0.17
OVchr2243174274SilentNAP388P0.26
PRADchr2243182984Frame_Shift_Insrs34872708N115Qfs*380.38
PRADchr2243172515Nonsense_MutationNAR461*0.17
READchr2243174378Missense_Mutationrs746660164V354M0.16
SKCMchr2243179956Silentrs776357499F197F0.75
SKCMchr2243169517Missense_MutationnovelP543T0.28
SKCMchr2243174361SilentNAF359F0.28
SKCMchr2243183104Missense_Mutationrs143398079V75I0.42
SKCMchr2243171867In_Frame_InsnovelD504_Y508dup0.06
SKCMchr2243179908Silentrs141963658P213P0.38
SKCMchr2243171898Missense_MutationnovelA499V0.18
SKCMchr2243174226SilentNAF404F0.35
SKCMchr2243172519SilentNAF459F0.11
SKCMchr2243174576SilentNAT319T0.06
SKCMchr2243172482Missense_Mutationrs776325002R472C0.23
SKCMchr2243179634Silentrs150151819P275P0.45
STADchr2243180909Missense_Mutationrs751449431R127C0.36
STADchr2243173782Missense_Mutationrs774841476R425H0.19
STADchr2243174372SilentnovelL356L0.15
STADchr2243179864Missense_MutationnovelP228H0.31
STADchr2243173731Missense_Mutationrs755433997R442Q0.09
STADchr2243183056Missense_Mutationrs779062023P91S0.33
STADchr22431672023'UTRrs7729113240.26
UCECchr2243179956Silentrs776357499F197F0.42
UCECchr22431673573'UTRnovel0.36
UCECchr2243169774Intronnovel0.16
UCECchr2243172489Silentrs141545045F469F0.1
UCECchr2243172474Silentrs746285212I474I0.4
UCECchr22431669933'UTRnovel0.48
UCECchr2243180825Missense_Mutationrs138301138G155S0.33
UCECchr2243179638Missense_Mutationrs148865013P274L0.11
UCECchr2243179949Missense_Mutationrs774813503R200W0.31
UCECchr2243180803Missense_MutationnovelA162D0.12
UCECchr2243171839Missense_MutationNAP519S0.24
UCECchr2243174536Missense_Mutationrs375493928D333N0.24
UCECchr22431680023'UTRnovel0.31
UCECchr2243171846Missense_MutationnovelN516K0.13
UCECchr2243169569Splice_SitenovelX526_splice0.21
UCECchr2243173747Missense_MutationnovelS437G0.27
UCECchr2243180931SilentnovelL119L0.63
UCECchr22431674723'UTRnovel1
UCECchr2243169722Intronnovel0.41
UCECchr2243168123Missense_MutationNAN607S0.29
UCECchr22431678223'UTRnovel0.24
UCECchr2243179687Missense_MutationNAP258S0.41
UCECchr2243179936Missense_MutationnovelA204V0.09
UCECchr2243176390Missense_MutationnovelL283M0.12
UCECchr2243173812Missense_MutationnovelH415R0.36
UCECchr2243179915Missense_Mutationrs756769700T211M0.21
UCECchr2243172528Silentrs199949209P456P0.37
UCECchr22431674773'UTRnovel0.3
UCECchr2243168113SilentnovelP610P0.3
UCECchr2243173789Missense_MutationnovelL423M0.3
UCECchr22431673533'UTRnovel0.43
UCECchr22431678373'UTRnovel0.58
UCECchr2243168900Missense_Mutationrs772385669R553W0.64
UCECchr2243172488Missense_Mutationrs185610797D470N0.37
UCECchr2243183056Missense_Mutationrs779062023P91S0.27
UCECchr22431679563'UTRnovel0.36
UCECchr2243179951Missense_Mutationrs369673894S199L0.29
UCECchr22431670563'UTRnovel0.42
UCECchr2243169506Silentrs200517252D546D0.5
UCECchr2243172474Silentrs746285212I474I0.4
UCSchr2243174298SilentnovelG380G0.35

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
DLBCDEL0.08330.21158
LGGDEL0.12280.0042376
PCPGDEL0.33950.044123
THCADEL0.15630.046486
THYMDEL0.0650.063154
UCSDEL0.58930.0013619

Survival Analysis
CancerP-value Q-value
STAD0.0021

Kaplan-Meier Survival Analysis

SARC0.00012

Kaplan-Meier Survival Analysis

MESO0.017

Kaplan-Meier Survival Analysis

ACC0.011

Kaplan-Meier Survival Analysis

SKCM0.0012

Kaplan-Meier Survival Analysis

LUSC0.0082

Kaplan-Meier Survival Analysis

ESCA0.00039

Kaplan-Meier Survival Analysis

PAAD0.05

Kaplan-Meier Survival Analysis

PCPG0.022

Kaplan-Meier Survival Analysis

LAML0.012

Kaplan-Meier Survival Analysis

LIHC0.00058

Kaplan-Meier Survival Analysis

CHOL0.027

Kaplan-Meier Survival Analysis

LUAD0.00028

Kaplan-Meier Survival Analysis

OV0.048

Kaplan-Meier Survival Analysis

Drugs

Select Dataset :


Input Drug :


Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000100304 (Gene tree)
Gene ID
23170
Gene Symbol
TTLL12
Alias
KIAA0153
Full Name
tubulin tyrosine ligase like 12
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
20,512 bases
Position
chr22:43,166,622-43,187,133
Accession
28974
RBP type
non-canonical RBP
Summary
(Tubulin Tyrosine Ligase Like 12) is a Protein Coding gene. An important paralog of this gene is TTLL13P.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000216129TTLL12-2013385-ENSP00000216129644 (aa)-Q14166
ENST00000494035TTLL12-204888-ENSP0000047629765 (aa)-V9GY16
ENST00000484711TTLL12-2032451--- (aa)--
ENST00000484118TTLL12-202636--- (aa)--
Gene Model
Click here to download ENSG00000100304's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000100304Tooth Demineralization4E-723918034
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000100304rs130584672243183043CMolar-incisor hypomineralization23918034[2.5-7.8]4.4EFO_0005321
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000100304's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000100304TTLL129545.161WBGene00008405ttll-129934.009Caenorhabditis_elegans
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005524ATP binding-IEAFunction
GO:0006464cellular protein modification process-IEAProcess
To top

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us