EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
29867202Epithelial membrane protein 1 promotes tumor metastasis by enhancing cell migration via copine-III and Rac1.Oncogene2018 OctAhmat Amin MKBdoi: 10.1038/s41388-018-0286-0
18264096Multiple loci identified in a genome-wide association study of prostate cancer.Nat Genet2008 MarThomas Gdoi: 10.1038/ng.91
20010870Copine-III interacts with ErbB2 and promotes tumor cell migration.Oncogene2010 Mar 18Heinrich Cdoi: 10.1038/onc.2009.456
26719032Direct binding of Copine3 with Jab1 activates downstream ErbB2 signaling and motility in SKBr3 breast cancer cells.Oncol Rep2016 FebChoi HYdoi: 10.3892/or.2015.4472

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr886548434Missense_Mutationrs781021543A338V0.24
BLCAchr886548343Missense_MutationnovelP308A0.23
BLCAchr8865585223'UTRnovel0.22
BLCAchr8865584753'UTRnovel0.15
BLCAchr886551052SilentnovelK340K0.23
BLCAchr886540293Missense_MutationnovelL198V0.1
BLCAchr886556176Missense_MutationNAN443K0.48
BLCAchr886556119SilentnovelL424L0.42
BLCAchr886556181Missense_MutationnovelS445F0.43
BLCAchr886546642Missense_MutationnovelS260R0.19
BLCAchr886528587SilentnovelS14S0.1
BLCAchr886540282Missense_MutationnovelF194S0.07
BRCAchr886537582Missense_MutationNAD160V0.18
BRCAchr886531196In_Frame_DelnovelK118_T119delinsN0.05
BRCAchr886547709Splice_SitenovelX274_splice0.12
BRCAchr886556168Missense_Mutationrs768025237I441V0.44
BRCAchr886556285Missense_MutationnovelE480K0.08
CESCchr886540289Missense_MutationNAI196M0.16
CESCchr886547756Nonsense_MutationNAQ289*0.21
CESCchr886551047Missense_MutationnovelD339N0.07
CESCchr886505272IntronNA0.6
CESCchr886548310Missense_MutationnovelD297N0.45
COADchr886531168Frame_Shift_InsNAK110Efs*240.23
COADchr886528968SilentNAK52K0.13
COADchr886529078Missense_MutationNAL89P0.15
COADchr886548434Missense_Mutationrs781021543A338V0.07
COADchr886546618Frame_Shift_Insrs751554216R255Kfs*190.34
COADchr886547755SilentNAC288C0.36
COADchr886554940Missense_Mutationrs148215511V404M0.38
COADchr886547564Intronnovel0.08
COADchr886551207Missense_MutationNAF365V0.48
COADchr886529011Missense_MutationNAY67N0.09
COADchr886558293Frame_Shift_DelNAE501Kfs*1070.36
COADchr886529059Missense_Mutationrs143209735D83N0.31
COADchr886551205Missense_MutationnovelN364S0.08
COADchr886558392Silentrs756944839T532T0.26
GBMchr886540289SilentnovelI196I0.06
HNSCchr886554892Nonsense_MutationnovelQ388*0.29
HNSCchr886540286SilentnovelK195K0.06
HNSCchr886532530Missense_MutationnovelD137Y0.05
HNSCchr886554905Missense_MutationnovelY392C0.29
KIRCchr886556242Missense_Mutationrs763399183E465D0.31
LAMLchr886544806Missense_MutationNAT234A0.29
LGGchr886556333Nonsense_MutationnovelQ496*0.11
LGGchr886547713Splice_RegionNAI274I0.41
LIHCchr886544812Missense_MutationnovelL236V0.23
LIHCchr886537589Nonsense_MutationNAY162*0.14
LUADchr886558357Missense_MutationNAT521A0.23
LUADchr886529019Missense_MutationnovelF69L0.14
LUADchr886547771Splice_SitenovelX293_splice0.54
LUADchr886540310Silentrs376893060Y203Y0.27
LUADchr886556128SilentnovelT427T0.2
LUADchr886537628SilentnovelL175L0.06
LUADchr886558320Missense_MutationnovelL508F0.04
LUADchr886558321Missense_MutationnovelA509S0.04
LUSCchr886528973Missense_MutationnovelC54F0.22
LUSCchr886529125Splice_SitenovelX104_splice0.25
LUSCchr886556298Missense_MutationnovelR484T0.12
LUSCchr886556113SilentnovelV422V0.22
LUSCchr886548428Missense_MutationnovelY336C0.11
LUSCchr886540319Missense_MutationnovelM206I0.35
LUSCchr886540320Missense_MutationnovelD207Y0.34
LUSCchr886548399SilentnovelL326L0.1
LUSCchr886548418Frame_Shift_InsnovelQ334Sfs*40.35
LUSCchr886528973Missense_MutationnovelC54S0.45
LUSCchr886556240Missense_MutationnovelE465Q0.22
LUSCchr886554961Missense_MutationnovelA411T0.28
LUSCchr886532551Missense_MutationNAE144Q0.06
LUSCchr886537638Missense_Mutationrs781107778R179W0.36
LUSCchr886528952Missense_Mutationrs376221396R47H0.36
OVchr8865587313'UTRnovel0.18
OVchr886548304Missense_MutationNAG295R0.2
PAADchr886537631Missense_MutationnovelM176I0.2
PAADchr886537638Missense_Mutationrs781107778R179W0.04
PRADchr886537579Nonsense_MutationNAS159*0.37
PRADchr886558347SilentnovelG517G0.44
READchr886556314Missense_MutationNAF489L0.37
READchr886551198Missense_MutationnovelP362S0.05
READchr886532521Nonsense_MutationnovelE134*0.44
READchr886554917Missense_MutationnovelN396T0.32
SKCMchr886554980Missense_MutationNAA417V0.25
SKCMchr886544795Missense_MutationNAQ230R0.3
SKCMchr886548309SilentNAV296V0.22
SKCMchr886554889Missense_MutationNAP387S0.3
SKCMchr886544781SilentNAL225L0.33
SKCMchr886556309Nonsense_MutationNAQ488*0.47
SKCMchr886558401SilentNAQ535Q0.29
SKCMchr886548404Missense_MutationnovelS328F0.27
SKCMchr886528991Missense_MutationNAS60F0.38
STADchr886554966Silentrs2304788T412T0.13
STADchr886554970Nonsense_Mutationrs781427442Q414*0.23
STADchr886546634Frame_Shift_Delrs761955273S260Afs*100.17
STADchr886531228Missense_Mutationrs76328401T129M0.23
STADchr886528995Missense_MutationNAK61N0.25
STADchr8865584863'UTRnovel0.15
STADchr886548358Missense_MutationNAY313H0.15
STADchr886556291Missense_MutationNAA482T0.2
STADchr886528591Missense_MutationnovelA16S0.15
STADchr886531204Missense_MutationnovelR121T0.17
THCAchr886537615Nonsense_MutationnovelD171delinsEV*LYSI0.08
UCECchr886537567Missense_MutationNAL155R0.37
UCECchr8865584903'UTRnovel0.33
UCECchr886547632Intronnovel0.39
UCECchr886546633Missense_MutationNAK257N0.54
UCECchr886528952Missense_Mutationrs376221396R47H0.39
UCECchr886531181SilentNAR113R0.49
UCECchr886544837Missense_MutationnovelP244H0.35
UCECchr886544822Missense_MutationNAA239D0.06
UCECchr886556218SilentNAG457G0.2
UCECchr886531179Nonsense_Mutationrs779231067R113*0.45
UCECchr886548304Missense_MutationNAG295R0.23
UCECchr886547713Missense_MutationnovelI274M0.35
UCECchr886546634Frame_Shift_Delrs761955273S260Afs*100.5
UCECchr886556234Missense_Mutationrs779563300A463T0.14
UCECchr886556165Missense_MutationNAA440T0.31
UCECchr886547678Intronnovel0.27
UCECchr886546621Missense_MutationnovelK253N0.23
UCECchr8865584273'UTRnovel0.38
UCECchr886546634Frame_Shift_Delrs761955273S260Afs*100.44
UCECchr886547527Intronnovel0.5
UCECchr886551222Missense_MutationnovelP370S0.39
UCECchr886558391Missense_Mutationrs761276717T532M0.38
UCECchr886546619Frame_Shift_DelNAR255Gfs*150.51
UCECchr886529058Silentrs770032983I82I0.22
UCECchr886546641Missense_MutationnovelS260N0.27
UCECchr886547626Intronnovel0.37
UCECchr8865584863'UTRnovel0.27
UCECchr886547698Intronnovel0.54
UCECchr886551194SilentnovelE360E0.34
UCECchr886540270Missense_MutationnovelV190D0.43
UCECchr886544805Missense_MutationnovelM233I0.15
UCECchr886528952Missense_Mutationrs376221396R47H0.32
UCECchr886532508Splice_SiteNAX130_splice0.32
UCECchr886551203Missense_MutationNAM363I0.29
UCECchr886531204Missense_MutationnovelR121I0.36
UCECchr886532508Splice_SitenovelX130_splice0.21
UCECchr886556284Silentrs562012874G479G0.35
UCECchr886528554SilentnovelA3A0.33
UCECchr886537626SilentnovelL175L0.47
UCECchr886554947Missense_MutationnovelR406M0.33

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
KIRCAMP0.10040.15559
PRADAMP0.25413.7005e-05
READDEL0.03030.20625
SARCAMP0.29570.18425
TGCTAMP0.67330.13696
THCADEL0.0080.038162

Survival Analysis
CancerP-value Q-value
KIRC0.00011

Kaplan-Meier Survival Analysis

MESO0.0073

Kaplan-Meier Survival Analysis

SKCM0.00042

Kaplan-Meier Survival Analysis

BRCA0.02

Kaplan-Meier Survival Analysis

KIRP0.022

Kaplan-Meier Survival Analysis

COAD0.025

Kaplan-Meier Survival Analysis

PAAD0.013

Kaplan-Meier Survival Analysis

LAML0.027

Kaplan-Meier Survival Analysis

UCEC0.028

Kaplan-Meier Survival Analysis

THCA0.022

Kaplan-Meier Survival Analysis

UVM0.008

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Gene Ontology
Description
Ensembl ID
ENSG00000085719 (Gene tree)
Gene ID
8895
Gene Symbol
CPNE3
Alias
N
Full Name
copine 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
47,072 bases
Position
chr8:86,514,427-86,561,498
Accession
2316
RBP type
non-canonical RBP
Summary
Calcium-dependent membrane-binding proteins may regulate molecular events at the interface of the cell membrane and cytoplasm. This gene encodes a protein which contains two type II C2 domains in the amino-terminus and an A domain-like sequence in the carboxy-terminus. The A domain mediates interactions between integrins and extracellular ligands. [provided by RefSeq, Aug 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000523588CPNE3-207426--- (aa)--
ENST00000621783CPNE3-212817-ENSP00000482002234 (aa)-A0A087WYQ3
ENST00000517391CPNE3-202785-ENSP00000428561262 (aa)-H0YB26
ENST00000622183CPNE3-213156--- (aa)--
ENST00000620393CPNE3-209680-ENSP00000478894135 (aa)-A0A087WUS8
ENST00000522240CPNE3-205446-ENSP0000042796679 (aa)-E5RFT7
ENST00000517490CPNE3-2034865XM_005251093ENSP00000477590537 (aa)XP_005251150O75131
ENST00000517862CPNE3-204654--- (aa)--
ENST00000523469CPNE3-206656-ENSP00000429561153 (aa)-E5RHZ0
ENST00000517354CPNE3-201566--- (aa)--
ENST00000621526CPNE3-211279-ENSP000004796708 (aa)-A0A0G2JMP5
ENST00000621245CPNE3-210581-ENSP00000481234139 (aa)-A0A087WXR6
ENST00000614678CPNE3-2084201--- (aa)--
Gene Model
Click here to download ENSG00000085719's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000085719Hip7.2950810918958E-617903296
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000085719rs11781016886517069CBlood protein levels29875488[0.28-0.36] unit increase0.32EFO_0007937
ENSG00000085719rs11781016886517069ACognitive performance (MTAG)30038396[0.0097-0.0187] unit decrease0.0142EFO_0008354
ENSG00000085719rs11781016886517069?General cognitive ability29844566z-score decrease4.516EFO_0004337
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000085719's network

* RBP PPI network refers to all genes directly bind to RBP
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.HDAFunction
GO:0004674protein serine/threonine kinase activity11041869.IDAFunction
GO:0005215transporter activity9430674.TASFunction
GO:0005515protein binding20010870.21044950.IPIFunction
GO:0005544calcium-dependent phospholipid binding21873635.IBAFunction
GO:0005544calcium-dependent phospholipid binding20010870.IDAFunction
GO:0005544calcium-dependent phospholipid binding11041869.TASFunction
GO:0005634nucleus20010870.21087455.IDAComponent
GO:0005730nucleolus-IDAComponent
GO:0005737cytoplasm20010870.21087455.IDAComponent
GO:0005737cytoplasm11041869.NASComponent
GO:0005739mitochondrion-IDAComponent
GO:0005829cytosol12949241.IDAComponent
GO:0005886plasma membrane21873635.IBAComponent
GO:0005886plasma membrane20010870.21087455.IDAComponent
GO:0005886plasma membrane-TASComponent
GO:0005925focal adhesion20010870.IDAComponent
GO:0006468protein phosphorylation-IEAProcess
GO:0006629lipid metabolic process9430674.TASProcess
GO:0016192vesicle-mediated transport9430674.TASProcess
GO:0030054cell junction20010870.IDAComponent
GO:0030335positive regulation of cell migration20010870.IMPProcess
GO:0030971receptor tyrosine kinase binding21873635.IBAFunction
GO:0030971receptor tyrosine kinase binding20010870.IPIFunction
GO:0035577azurophil granule membrane-TASComponent
GO:0038128ERBB2 signaling pathway21873635.IBAProcess
GO:0038128ERBB2 signaling pathway20010870.IDAProcess
GO:0043312neutrophil degranulation-TASProcess
GO:0046474glycerophospholipid biosynthetic process-TASProcess
GO:0048306calcium-dependent protein binding20010870.IDAFunction
GO:0070062extracellular exosome19056867.19199708.20458337.23533145.HDAComponent
GO:0071277cellular response to calcium ion21873635.IBAProcess
GO:0071277cellular response to calcium ion20010870.21087455.IDAProcess
GO:0071363cellular response to growth factor stimulus20010870.IDAProcess
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