EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
28232072BRG1 and BRM function antagonistically with c-MYC in adult cardiomyocytes to regulate conduction and contractility.J Mol Cell Cardiol2017 AprWillis MSdoi: 10.1016/j.yjmcc.2017.02.003
24471421Loss of BRM expression is a frequently observed event in poorly differentiated clear cell renal cell carcinoma.Histopathology2014 MayXia QYdoi: 10.1111/his.12334
25673149The miR-199a/Brm/EGR1 axis is a determinant of anchorage-independent growth in epithelial tumor cell lines.Sci Rep2015 Feb 12Kobayashi Kdoi: 10.1038/srep08428.
12566296Loss of BRG1/BRM in human lung cancer cell lines and primary lung cancers: correlation with poor prognosis.Cancer Res2003 Feb 1Reisman DN-
19488910Loss of heterozygosity at the 9p21-24 region and identification of BRM as a candidate tumor suppressor gene in head and neck squamous cell carcinoma.Cancer Invest2009 JulGunduz Edoi: 10.1080/07357900802563010.
25026375Modulation of Brahma expression by the mitogen-activated protein kinase/extracellular signal regulated kinase pathway is associated with changes in melanoma proliferation.Arch Biochem Biophys2014 Dec 1Mehrotra Adoi: 10.1016/j.abb.2014.07.004
25808524The SWI/SNF ATPases Are Required for Triple Negative Breast Cancer Cell Proliferation.J Cell Physiol2015 NovWu Qdoi: 10.1002/jcp.24991.
28038711SMARCA4 and SMARCA2 deficiency in non-small cell lung cancer: immunohistochemical survey of 316 consecutive specimens.Ann Diagn Pathol2017 FebHerpel Edoi: 10.1016/j.anndiagpath.2016.10.006
21092585[Expression of BRG1 and BRM proteins in prostatic cancer].Zhonghua Bing Li Xue Za Zhi2010 SepLiu XB-
15240517Chromatin remodeling factors and BRM/BRG1 expression as prognostic indicators in non-small cell lung cancer.Clin Cancer Res2004 Jul 1Fukuoka J-
18923443Hotspot mutation of Brahma in non-melanoma skin cancer.J Invest Dermatol2009 AprMoloney FJdoi: 10.1038/jid.2008.319
23872584A synthetic lethality-based strategy to treat cancers harboring a genetic deficiency in the chromatin remodeling factor BRG1.Cancer Res2013 Sep 1Oike Tdoi: 10.1158/0008-5472.CAN-12-4593
24520176Functional epigenetics approach identifies BRM/SMARCA2 as a critical synthetic lethal target in BRG1-deficient cancers.Proc Natl Acad Sci U S A2014 Feb 25Hoffman GRdoi: 10.1073/pnas.1316793111
28571677BRM promoter insertion polymorphisms increase the risk of cancer: A meta-analysis.Gene2017 Aug 30Ouyang Xdoi: 10.1016/j.gene.2017.05.047
28602977BRM/SMARCA2 promotes the proliferation and chemoresistance ofpancreatic cancer cells by targeting JAK2/STAT3 signaling.Cancer Lett2017 Aug 28Zhang Zdoi: 10.1016/j.canlet.2017.05.006
28296015Constitutional and functional genetics of human alcohol-related hepatocellular carcinoma.Liver Int2017 NovNahon Pdoi: 10.1111/liv.13419
30447346Inactivation of SMARCA2 by promoter hypermethylation drives lung cancer development.Gene2019 Mar 1Wu Jdoi: 10.1016/j.gene.2018.11.032
29894502Two functional indel polymorphisms in the promoter region of the Brahma gene (BRM) and disease risk and progression-free survival in colorectal cancer.PLoS One2018 Jun 12Yu Ydoi: 10.1371/journal.pone.0198873

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr921927793'UTRnovel0.26
ACCchr92077741Missense_MutationnovelA717S0.42
BLCAchr92186096Missense_MutationnovelI1488F0.23
BLCAchr92083369Missense_MutationnovelE791K0.71
BLCAchr92159835Intronrs7663084790.64
BLCAchr92084139Missense_MutationnovelF823L0.25
BLCAchr92115859Missense_MutationnovelQ1165P0.58
BLCAchr92104016Missense_MutationNAR1047W0.54
BLCAchr92115850Missense_Mutationrs281875186R1162H0.41
BLCAchr92104043Missense_MutationnovelD1056H0.29
BLCAchr92033021Missense_MutationnovelM99V0.51
BLCAchr92110251Splice_Regionnovel0.2
BLCAchr92054650Missense_MutationnovelS367F0.17
BLCAchr92110409Missense_MutationNAP1150S0.67
BLCAchr92115849Missense_MutationNAR1162C0.33
BLCAchr92110374Missense_MutationnovelA1138V0.25
BLCAchr92115870Missense_MutationnovelV1169F0.9
BLCAchr92115849Missense_MutationnovelR1162S0.36
BLCAchr92088542Missense_MutationNAL938I0.1
BLCAchr92086985Missense_MutationNAL895V0.87
BLCAchr92058337Missense_MutationnovelY465C0.42
BLCAchr92110333SilentnovelL1124L0.25
BLCAchr92047456Missense_MutationnovelV340L0.36
BLCAchr92060974Missense_MutationNAR560S0.48
BLCAchr92110327Missense_MutationNAF1122L0.44
BLCAchr92119510Missense_Mutationrs765383428R1246Q0.33
BLCAchr92115969Missense_MutationnovelG1202S0.3
BLCAchr92077687Missense_MutationnovelQ699E0.39
BRCAchr92161810Frame_Shift_InsnovelR1370Mfs*230.07
BRCAchr92039872Silentrs781034714P254P0.48
BRCAchr92088587Missense_MutationNAE953K0.73
BRCAchr92058393Missense_MutationNAH484D0.14
BRCAchr92116045Missense_MutationNAN1227S0.34
BRCAchr92088583Missense_MutationNAK951N0.44
BRCAchr92054717Missense_MutationNAQ389H0.43
BRCAchr92039490Missense_Mutationrs267602196P127L0.15
BRCAchr921934113'UTRnovel0.13
BRCAchr92081840Silentrs749703040G731G0.77
BRCAchr92076304Missense_MutationNAE671Q0.44
BRCAchr92123746Missense_MutationnovelD1264H0.1
BRCAchr92181612Nonsense_MutationnovelS1432*0.06
BRCAchr92110343Missense_MutationNAA1128T0.19
BRCAchr92039663Nonsense_MutationNAQ185*0.15
BRCAchr92097429SilentNAL1012L0.28
CESCchr921936043'UTRnovel0.41
CESCchr92104063Missense_MutationNAL1062F0.4
CESCchr92073622Missense_MutationnovelE645G0.11
CESCchr92081971Missense_MutationnovelP775L0.43
CESCchr92086855Silentrs142930412D851D0.35
CESCchr92088558Missense_MutationNAR943K0.07
CESCchr92158968Intronnovel0.12
CESCchr921933703'UTRnovel0.39
CESCchr92086856Missense_Mutationrs281875199E852K0.18
CESCchr92115948Missense_MutationNAD1195H0.33
CESCchr92123896Missense_MutationNAV1314M0.11
CESCchr921928513'UTRnovel0.28
CESCchr921934723'UTRnovel0.49
CESCchr92123739SilentNAR1261R0.47
CESCchr92029101Missense_MutationnovelL27F0.4
COADchr92123719Missense_MutationNAR1255W0.36
COADchr92032958Missense_Mutationrs762444118D78N0.42
COADchr92123819Missense_MutationNAD1288G0.44
COADchr92182150Missense_MutationnovelR1457C0.34
COADchr92054628Nonsense_MutationNAE360*0.11
COADchr92039767SilentNAQ219Q0.24
COADchr92028984Splice_Regionnovel0.34
COADchr92158722Intronnovel0.44
COADchr92161816Missense_MutationNAP1371H0.62
COADchr92115831Missense_MutationNAA1156T0.28
COADchr92056700Missense_MutationNAR401H0.33
COADchr92056778Missense_MutationNAR427H0.17
COADchr92077644Silentrs149890563D684D0.09
COADchr92039827In_Frame_DelNAQ242del0.32
COADchr92115945Missense_MutationnovelV1194M0.07
COADchr92047455Silentrs750120946P339P0.19
COADchr92081995Missense_MutationNAS783L0.22
COADchr92029048Missense_Mutationrs773325366A9V0.17
COADchr92060867Missense_MutationNAR525C0.03
COADchr92116018Missense_MutationNAQ1218R0.32
COADchr92084129Missense_MutationNAS820N0.33
COADchr92054700Missense_MutationNAR384W0.36
COADchr92058367Missense_MutationNAK475T0.38
COADchr92081881Missense_MutationNAG745E0.29
COADchr92115855Missense_MutationNAG1164R0.26
COADchr92181578Nonsense_MutationNAR1421*0.24
COADchr92076309Nonsense_MutationnovelD673Tfs*20.07
COADchr92161836Missense_MutationNAP1378S0.36
COADchr92115894Missense_MutationNAV1177M0.27
DLBCchr92081900Missense_MutationnovelM751I0.11
ESCAchr921933713'UTRnovel0.16
ESCAchr92058298Missense_MutationnovelL452P0.46
ESCAchr92161902Missense_MutationnovelR1400G0.21
GBMchr92191345SilentnovelP1558P0.48
GBMchr92056809Missense_MutationnovelK437N0.09
GBMchr92119474Missense_MutationnovelP1234L0.07
GBMchr92119499Missense_MutationnovelM1242I0.03
GBMchr92081995Missense_MutationNAS783L0.16
GBMchr92086866Missense_MutationNAR855Q0.59
GBMchr92058333Missense_MutationnovelE464K0.11
GBMchr92029232Missense_MutationNAM70I0.42
GBMchr92039894Missense_Mutationrs771281007P262S0.18
GBMchr92056768SilentnovelR424R0.17
GBMchr92101587SilentnovelH1032H0.16
GBMchr92110296Missense_MutationnovelF1112C0.18
GBMchr92115922Missense_MutationNAA1186V0.48
GBMchr92086980Missense_MutationnovelA893V0.1
GBMchr92039586Missense_MutationNAG159D0.34
GBMchr92104169Missense_MutationNAG1098S0.41
HNSCchr92086844Missense_MutationNAM848L0.2
HNSCchr92123782Missense_MutationnovelE1276K0.19
HNSCchr92097460Missense_MutationnovelQ1023K0.59
HNSCchr92039700Missense_MutationnovelP197L0.85
HNSCchr92192726Missense_Mutationrs753433101T1587M0.2
HNSCchr92076291Missense_MutationnovelS666R0.36
HNSCchr92058446SilentnovelE501E0.11
HNSCchr92086964Missense_MutationnovelL888I0.73
HNSCchr92086853Missense_MutationnovelD851N0.19
HNSCchr92086833Missense_MutationNAR844Q0.22
HNSCchr92182188Missense_MutationnovelK1469N0.07
KICHchr92056812SilentnovelI438I0.44
KIRCchr92116050Splice_SiteNAX1228_splice0.37
KIRCchr92056787Missense_MutationNAE430V0.16
KIRCchr92076232Nonsense_MutationnovelE647*0.21
KIRPchr92115829Missense_MutationNAQ1155L0.1
KIRPchr92115822Missense_MutationnovelD1153H0.36
KIRPchr92110312SilentNAS1117S0.29
LAMLchr921927853'UTRnovel0.05
LAMLchr92081904Missense_MutationNAL753F0.3
LGGchr92084102Missense_MutationNAR811H0.45
LGGchr92054698Missense_MutationnovelL383R0.06
LIHCchr92115820Splice_SitenovelX1153_splice0.32
LIHCchr92070419Missense_MutationnovelK565T0.41
LIHCchr92123922Missense_MutationnovelE1322D0.06
LIHCchr92182157Missense_MutationnovelH1459R0.34
LIHCchr92101571Missense_MutationnovelE1027A0.72
LIHCchr92123796Silentrs764977538L1280L0.07
LIHCchr92097384Splice_SitenovelX998_splice0.46
LIHCchr92097385Missense_MutationnovelG998R0.46
LUADchr92110400Missense_MutationNAD1147N0.58
LUADchr92115969Missense_Mutationrs281875239G1202C0.63
LUADchr92084151Missense_MutationnovelL827F0.37
LUADchr92170433Missense_MutationnovelK1405R0.46
LUADchr92110342Missense_MutationNAR1127S0.24
LUADchr92088558Missense_MutationNAR943I0.77
LUADchr92123791Missense_MutationNAE1279K0.09
LUADchr92056743SilentnovelY415Y0.17
LUADchr92058363Nonsense_MutationnovelQ474*0.07
LUADchr92101582Missense_MutationNAE1031Q0.16
LUADchr92084172Missense_MutationNAI834M0.25
LUADchr92086930Missense_MutationnovelR876S0.17
LUADchr92182167SilentnovelR1462R0.1
LUADchr92054631Missense_MutationNAL361M0.3
LUADchr92029134Missense_Mutationrs768632343G38C0.41
LUADchr92029135Missense_MutationnovelG38V0.38
LUADchr92182201Missense_MutationNAL1474V0.09
LUADchr92104102Missense_MutationNAM1075I0.18
LUADchr92115837Missense_MutationnovelD1158Y0.33
LUADchr92047450Missense_MutationNAD338Y0.29
LUADchr92054619Missense_MutationnovelR357W0.59
LUADchr92054677Missense_MutationNAA376V0.35
LUADchr92056747Missense_MutationNAR417W0.42
LUSCchr92029188Missense_MutationNAP56S0.12
LUSCchr92081837Missense_MutationnovelQ730H0.11
LUSCchr92081948Missense_MutationNAM767I0.62
LUSCchr92159898Intronrs3691403730.15
LUSCchr92116022SilentNAA1219A0.16
LUSCchr92058296SilentnovelY451Y0.62
LUSCchr92056778Missense_MutationnovelR427P0.31
LUSCchr92110347Missense_MutationNAG1129V0.37
LUSCchr92054679Missense_MutationnovelT377S0.6
LUSCchr92084096Missense_MutationnovelA809V0.5
LUSCchr92056728Silentrs771891440L410L0.5
LUSCchr92081898Missense_MutationNAM751V0.81
LUSCchr92047369Missense_MutationnovelA311P0.21
LUSCchr92058311Frame_Shift_DelnovelL456Ffs*510.12
LUSCchr92060857Silentrs148410896K521K0.32
LUSCchr92039694Missense_MutationNAG195V0.92
OVchr92077763Missense_MutationnovelL724Q0.05
OVchr92039892Missense_MutationNAR261K0.28
OVchr92073305Missense_MutationnovelA614S0.06ResIII
OVchr92104000Splice_Regionnovel0.44
OVchr92039872SilentnovelP254P0.42
OVchr92076321SilentNAQ676Q0.22
OVchr92119499Missense_MutationnovelM1242I0.07
OVchr92115935Nonsense_MutationnovelY1190*0.09
OVchr92110307Nonsense_MutationnovelG1116*0.06
PAADchr92073274SilentnovelG603G0.14
PAADchr92104068Missense_Mutationrs747313863A1064V0.17
PAADchr92119478Silentrs748144678D1235D0.13
PRADchr92119528Frame_Shift_DelnovelF1253Lfs*220.33
PRADchr92115841Missense_Mutationrs281875187R1159Q0.41
PRADchr92060865Missense_MutationnovelR524M0.31
READchr92086832Missense_MutationNAR844W0.23
READchr92058432Missense_MutationNAR497W0.47
READchr92029064SilentnovelG14G0.89
READchr92032957Silentrs148086416I77I0.41
READchr92060894Missense_MutationnovelD534N0.46
READchr92086832Missense_MutationNAR844W0.39
READchr92158787Intronnovel0.5
SARCchr92104085Missense_MutationnovelL1070M0.65
SARCchr92097414SilentnovelN1007N0.63
SARCchr92161707Nonsense_MutationnovelE1335*0.24
SARCchr92158951Intronrs5685485540.48
SARCchr92033023Missense_MutationnovelM99I0.12
SKCMchr92186140SilentNAA1502A0.16
SKCMchr92119528Missense_MutationnovelL1252P0.19
SKCMchr92039611SilentNAP167P0.84
SKCMchr92084115Silentrs753039711V815V0.54
SKCMchr92182173SilentnovelL1464L0.83
SKCMchr92088560Missense_MutationNAP944S0.42
SKCMchr92081995Missense_MutationNAS783L0.59
SKCMchr92096748Missense_MutationNAS992F0.12
SKCMchr92110321SilentNAF1120F0.29
SKCMchr92161844SilentNAP1380P0.35
SKCMchr92182194SilentNAV1471V0.1
SKCMchr92056842SilentnovelH448H0.4
SKCMchr92056843Nonsense_MutationnovelQ449*0.4
SKCMchr92054700Missense_MutationNAR384W0.25
SKCMchr92161812Missense_MutationNAR1370C0.47
SKCMchr92076235Missense_MutationNAE648K0.41
SKCMchr92029125Missense_Mutationrs562820489P35S0.38
SKCMchr92086993SilentNAF897F0.62
SKCMchr92181573Missense_MutationNAS1419L0.65
SKCMchr92029165Missense_MutationNAP48L0.36
SKCMchr92039582Missense_MutationNAP158S0.27
SKCMchr92058350SilentNAV469V0.23
SKCMchr92054680Missense_MutationNAT377I0.67
SKCMchr92039706Missense_MutationNAP199L0.38
SKCMchr92039602Missense_MutationnovelM164I0.26
SKCMchr92123808SilentNAI1284I0.19
SKCMchr92039581SilentnovelI157I0.39
SKCMchr92081880Missense_MutationNAG745R0.86
SKCMchr92076262Missense_MutationNAE657K0.1
SKCMchr92161877Silentrs763381660I1391I0.35
SKCMchr92115832Frame_Shift_InsnovelD1158Pfs*490.3
SKCMchr92054700Missense_MutationNAR384W0.63
SKCMchr92081846Missense_MutationnovelE733D0.28
SKCMchr92096660Missense_MutationnovelE963K0.41
SKCMchr92039611SilentNAP167P0.08
STADchr92086916Missense_MutationnovelV872M0.16
STADchr92097391Missense_MutationnovelG1000R0.42
STADchr92084121SilentNAQ817Q0.61
STADchr92123753Missense_MutationNAR1266Q0.45
STADchr92123796Silentrs764977538L1280L0.19
STADchr92182188SilentnovelK1469K0.11
STADchr92076291Silentrs765966954S666S0.04
STADchr92123850Silentrs141291951E1298E0.23
STADchr92039502Missense_MutationNAP131Q0.29
STADchr92054701Missense_MutationNAR384Q0.24
STADchr92123835Missense_MutationNAR1293S0.24
STADchr92161877Silentrs763381660I1391I0.37
STADchr92086906Missense_MutationNAN868K0.25
STADchr92032958Missense_Mutationrs762444118D78N0.16
STADchr92056757Missense_MutationnovelR420H0.39
STADchr92104047Missense_Mutationrs779591664R1057H0.17
STADchr92039604Missense_MutationNAS165N0.08
STADchr92181665Frame_Shift_DelnovelI1452*0.58
STADchr92086956Missense_MutationnovelQ885R0.47
STADchr92110275Missense_MutationNAR1105H0.28
STADchr92060967Missense_MutationNAK558R0.08
STADchr92056835Missense_MutationnovelQ446R0.16
STADchr92054682Missense_Mutationrs753807887V378L0.22
STADchr92033024Nonsense_MutationnovelR100*0.31
STADchr92104016Missense_MutationNAR1047W0.21
STADchr92047441Nonsense_MutationnovelQ335*0.23
STADchr92084171Missense_MutationnovelI834T0.09
STADchr92039678Missense_MutationNAK190E0.34
STADchr92191331Missense_MutationNAG1554C0.39
STADchr921927843'UTRnovel0.34
STADchr92161782Missense_MutationnovelD1360N0.29
STADchr92161854Missense_MutationNAT1384A0.15
STADchr92073576Missense_MutationnovelA630S0.25ResIII
STADchr92161726Missense_MutationNAV1341A0.16
STADchr92181665Frame_Shift_DelnovelI1452*0.3
STADchr92058432Missense_MutationNAR497W0.26
UCECchr92029031Silentrs775432878T3T0.16
UCECchr92032966Missense_MutationNAI80M0.33
UCECchr92104109Missense_MutationNAL1078F0.36
UCECchr92192726Missense_Mutationrs753433101T1587M0.32
UCECchr92054700Missense_MutationNAR384W0.29
UCECchr92058342Missense_MutationNAR467W0.26
UCECchr92158807Intronnovel0.21
UCECchr92056699Missense_MutationnovelR401C0.2
UCECchr92161875Missense_MutationNAI1391V0.25
UCECchr921929473'UTRnovel0.26
UCECchr92039679Missense_MutationnovelK190T0.31
UCECchr921934463'UTRnovel0.32
UCECchr92182180Missense_MutationnovelL1467M0.25
UCECchr921927413'UTRnovel0.26
UCECchr92191298Frame_Shift_DelnovelD1545Mfs*220.58
UCECchr921933533'UTRnovel0.3
UCECchr92104095Missense_MutationNAC1073F0.44
UCECchr92047439Missense_MutationnovelP334L0.5
UCECchr92186125SilentnovelS1497S0.19
UCECchr92083404Missense_MutationNAI802M0.42
UCECchr92060822Missense_MutationnovelD510N0.45
UCECchr92081984SilentNAI779I0.08
UCECchr92047444Missense_MutationnovelG336C0.4
UCECchr921933703'UTRnovel0.33
UCECchr92115834Nonsense_MutationnovelQ1157*0.21
UCECchr92181646SilentnovelI1443I0.36
UCECchr92123719Missense_MutationNAR1255W0.32
UCECchr921933063'UTRnovel0.07
UCECchr92054640Silentrs763966056L364L0.34
UCECchr92058342Missense_MutationNAR467W0.51
UCECchr92029101Missense_MutationNAL27I0.44
UCECchr92029198Missense_Mutationrs755744610T59M0.28
UCECchr92070463Missense_MutationNAD580N0.19
UCECchr92083367Frame_Shift_DelnovelY790Lfs*110.07
UCECchr92123927Missense_MutationNAQ1324R0.23
UCECchr92182212SilentNAN1477N0.36
UCECchr92056699Missense_MutationnovelR401C0.17
UCECchr92186123Missense_MutationnovelS1497P0.17
UCECchr92096700Missense_MutationNAI976S0.34
UCECchr92110410Missense_MutationNAP1150H0.45
UCECchr92123821Missense_MutationnovelA1289T0.21
UCECchr92161869Missense_Mutationrs769712929A1389T0.32
UCECchr921933523'UTRnovel0.48
UCECchr92054700Missense_MutationNAR384W0.3
UCECchr92123807Missense_MutationnovelI1284T0.36
UCECchr92186185SilentnovelN1517N0.38
UCECchr921933553'UTRnovel0.46
UCECchr92039877Missense_MutationnovelL256P0.39
UCECchr92077747SilentnovelL719L0.29
UCECchr92083414Splice_SitenovelX805_splice0.33
UCECchr92182228SilentnovelL1483L0.24
UCECchr92029198Missense_Mutationrs755744610T59M0.31
UCECchr92039592Missense_Mutationrs149394378P161L0.36
UCECchr92054648SilentnovelG366G0.32
UCECchr92104068Missense_Mutationrs747313863A1064V0.43
UCECchr92115944SilentnovelN1193N0.2
UCECchr92123731Missense_MutationnovelD1259N0.29
UCECchr921933713'UTRnovel0.34
UCECchr92029069Missense_MutationnovelS16L0.19
UCECchr92191387SilentnovelS1572S0.11
UCECchr921931693'UTRnovel0.41
UCECchr921935753'UTRnovel0.26
UCECchr92104080Missense_MutationnovelR1068Q0.43
UCECchr92077724Missense_MutationnovelR711M0.22
UCECchr92060957In_Frame_InsNAK558dup0.44
UCECchr92083372Missense_MutationnovelF792V0.33
UCECchr92096702Missense_MutationnovelL977M0.11
UCECchr92186098Splice_RegionnovelI1488I0.46
UCECchr92104068Missense_Mutationrs747313863A1064V0.43
UCECchr92158770Intronnovel0.5
UCECchr92115925Missense_MutationNAA1187V0.32
UCECchr92186134SilentNAK1500K0.33
UCECchr921928963'UTRnovel0.27
UCECchr92076302Missense_MutationnovelS670Y0.22
UCECchr92161826Missense_MutationnovelE1374D0.26
UCECchr921929783'UTRnovel0.24
UCECchr92115927Missense_MutationNAA1188T0.13
UCECchr921933713'UTRnovel0.33
UCECchr92088523SilentnovelT931T0.3
UCECchr921935863'UTRnovel0.39
UCECchr921931663'UTRnovel0.23
UCECchr92029113Missense_MutationnovelP31S0.65
UCECchr92058456Nonsense_MutationnovelR505*0.29
UCECchr92104068Missense_Mutationrs747313863A1064V0.15
UCECchr921931933'UTRnovel0.58
UCECchr92123895Silentrs745662991D1313D0.38
UCECchr92158900Intronnovel0.24
UCECchr92054609SilentNAR353R0.18
UCECchr92033045Missense_MutationnovelG107S0.05
UCECchr92086961Missense_MutationNAK887E0.1
UCECchr92123881Missense_MutationNAR1309C0.82
UCECchr921933703'UTRnovel0.31
UCECchr92096739Missense_MutationnovelT989I0.32
UCECchr921931403'UTRnovel0.36
UCECchr92086967Missense_MutationnovelP889T0.24
UCECchr92123757Missense_Mutationrs763135326N1267K0.41
UCECchr92182209SilentnovelH1476H0.47
UCECchr92086832Missense_MutationNAR844W0.15
UCECchr92056699Missense_MutationnovelR401C0.18
UCECchr92115846Missense_MutationnovelH1161N0.27
UCECchr92123867Missense_MutationNAF1304S0.44
UCECchr92170448Missense_MutationnovelS1410Y0.05
UCECchr92161822Missense_MutationNAA1373G0.58
UCECchr92029101Missense_MutationNAL27I0.21
UCECchr92058346Missense_MutationNAS468F0.3
UCECchr92192726Missense_Mutationrs753433101T1587M0.38
UCECchr92039592Missense_Mutationrs149394378P161L0.6
UCECchr92058378Missense_MutationnovelA479S0.25
UCECchr92076260Missense_MutationnovelT656I0.3
UCECchr92084125Missense_MutationnovelR819W0.24
UCECchr92104085SilentnovelL1070L0.23
UCECchr92110351SilentnovelG1130G0.29
UCECchr92029101Missense_MutationNAL27I0.35
UCECchr92115978Missense_MutationnovelD1205N0.52
UCECchr92123724Missense_MutationnovelM1256I0.57
UCECchr92039853Missense_MutationnovelT248M0.38
UCECchr921933533'UTRnovel0.32
UCECchr92056775Missense_MutationNAA426D0.25
UCECchr92161875Missense_MutationNAI1391V0.25
UCECchr92060893Silentrs145129640T533T0.29
UCECchr92181578Nonsense_MutationNAR1421*0.42
UCECchr92182220Missense_MutationnovelT1480M0.4
UCECchr92161687Missense_MutationNAA1328V0.08
UCECchr92191315SilentnovelG1548G0.77
UCSchr92191349Nonsense_Mutationrs747368303R1560*0.37

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BLCAAMP0.15440.073854
LAMLDEL0.00520.24147
OVDEL0.42140.00059831
SARCDEL0.33855.1003e-05
TGCTDEL0.38677.3329e-05
THCADEL0.03010.24038
THYMDEL0.03250.022012

Survival Analysis
CancerP-value Q-value
MESO0.0002

Kaplan-Meier Survival Analysis

HNSC0.011

Kaplan-Meier Survival Analysis

SKCM0.0013

Kaplan-Meier Survival Analysis

ESCA0.017

Kaplan-Meier Survival Analysis

KIRP0.019

Kaplan-Meier Survival Analysis

PAAD0.0051

Kaplan-Meier Survival Analysis

PCPG0.048

Kaplan-Meier Survival Analysis

CESC0.032

Kaplan-Meier Survival Analysis

LGG0.0059

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000080503 (Gene tree)
Gene ID
6595
Gene Symbol
SMARCA2
Alias
BAF190|hSNF2a|hBRM|Sth1p|SNF2LA|BRM|SNF2|SWI2|SNF2L2
Full Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
213,335 bases
Position
chr9:1,980,290-2,193,624
Accession
11098
RBP type
canonical RBP
Summary
The protein encoded by this gene is a member of the SWI/SNF family of proteins and is highly similar to the brahma protein of Drosophila. Members of this family have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI, which is required for transcriptional activation of genes normally repressed by chromatin. Alternatively spliced transcript variants encoding different isoforms have been found for this gene, which contains a trinucleotide repeat (CAG) length polymorphism. [provided by RefSeq, Jan 2014]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000349788ResIIIPF04851.158.1e-0811
ENSP00000371629ResIIIPF04851.158.1e-0811
ENSP00000265773ResIIIPF04851.158.2e-0811
ENSP00000371638ResIIIPF04851.158.2e-0811
ENSP00000392081ResIIIPF04851.154.4e-0611
ENSP00000488947ResIIIPF04851.150.0001411
ENSP00000392081BRKPF07533.169.2e-1711
ENSP00000265773BRKPF07533.169.4e-1711
ENSP00000371638BRKPF07533.169.4e-1711
ENSP00000349788BRKPF07533.169.4e-1711
ENSP00000371629BRKPF07533.169.4e-1711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
18094716Re-expression of DNA methylation-silenced CD44 gene in a resistant NB4 cell line: rescue of CD44-dependent cell death by cAMP.Leukemia2008 MarAbecassis I-
15331701VP16-dependent association of chromatin-modifying coactivators and underrepresentation of histones at immediate-early gene promoters during herpes simplex virus infection.J Virol2004 SepHerrera FJ-
19433513Long-range activation of FKBP51 transcription by the androgen receptor via distal intronic enhancers.Nucleic Acids Res2009 JulMakkonen Hdoi: 10.1093/nar/gkp352
22493065Histone demethylase UTX and chromatin remodeler BRM bind directly to CBP and modulate acetylation of histone H3 lysine 27.Mol Cell Biol2012 JunTie Fdoi: 10.1128/MCB.06392-11
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000634688SMARCA2-225897-ENSP00000489473149 (aa)-A0A0U1RRD6
ENST00000423555SMARCA2-212834-ENSP00000413057228 (aa)-F6XE55
ENST00000636969SMARCA2-256100--- (aa)--
ENST00000416751SMARCA2-210633-ENSP00000412242192 (aa)-F6UH26
ENST00000491574SMARCA2-217645--- (aa)--
ENST00000382183SMARCA2-2051178-ENSP00000371618236 (aa)-B1ALG1
ENST00000636559SMARCA2-2526853-ENSP00000490852279 (aa)-A0A1B0GWA8
ENST00000382185SMARCA2-2061584-ENSP00000371620276 (aa)-B4DNT1
ENST00000635397SMARCA2-241578--- (aa)--
ENST00000382186SMARCA2-207955-ENSP00000371621254 (aa)-B1ALG2
ENST00000634781SMARCA2-2291106-ENSP00000489302260 (aa)-A0A0U1RR26
ENST00000635659SMARCA2-244762-ENSP0000048933458 (aa)-A0A0U1RR45
ENST00000636367SMARCA2-2501889-ENSP0000048994298 (aa)-A0A0U1RQP3
ENST00000634536SMARCA2-224556--- (aa)--
ENST00000349721SMARCA2-2035761-ENSP000002657731590 (aa)-P51531
ENST00000637383SMARCA2-262162-ENSP000004896459 (aa)-A0A1B0GTC9
ENST00000635226SMARCA2-237640-ENSP0000048956057 (aa)-A0A0U1RRJ8
ENST00000634706SMARCA2-226630-ENSP00000489504169 (aa)-A0A0U1RRF8
ENST00000634925SMARCA2-2301582--- (aa)--
ENST00000637134SMARCA2-259100-ENSP000004896672 (aa)-UPI0000061A42
ENST00000357248SMARCA2-2045855-ENSP000003497881572 (aa)-P51531
ENST00000636221SMARCA2-248100-ENSP000004906454 (aa)-UPI00080A7E98
ENST00000634989SMARCA2-2321118-ENSP0000048910098 (aa)-A0A0U1RQP3
ENST00000638139SMARCA2-2652675--- (aa)--
ENST00000635739SMARCA2-2464272--- (aa)--
ENST00000637103SMARCA2-2585657-ENSP00000490486288 (aa)-A0A1B0GU54
ENST00000637856SMARCA2-264100--- (aa)--
ENST00000639760SMARCA2-2662942-ENSP00000492585271 (aa)-A0A1W2PS06
ENST00000634435SMARCA2-223744-ENSP00000489212245 (aa)-A0A0U1RQX3
ENST00000634338SMARCA2-220740-ENSP00000489388244 (aa)-A0A0U1RR83
ENST00000635590SMARCA2-2431843-ENSP0000048958798 (aa)-A0A0U1RQP3
ENST00000637097SMARCA2-257100-ENSP000004904113 (aa)-UPI00000618AB
ENST00000636916SMARCA2-255111-ENSP0000049026237 (aa)-A0A1B0GUV6
ENST00000635388SMARCA2-239711-ENSP00000489271202 (aa)-A0A0U1RR09
ENST00000439732SMARCA2-213755-ENSP00000409398215 (aa)-A0A0A0MT03
ENST00000417599SMARCA2-211980-ENSP00000387486276 (aa)-B4DNT1
ENST00000382194SMARCA2-2085679-ENSP000003716291572 (aa)-P51531
ENST00000635129SMARCA2-234582--- (aa)--
ENST00000635133SMARCA2-235758-ENSP00000489168200 (aa)-A0A0U1RQU0
ENST00000635392SMARCA2-240291-ENSP0000048950138 (aa)-A0A0U1RRF5
ENST00000637806SMARCA2-2637061-ENSP00000490551279 (aa)-A0A1B0GWA8
ENST00000324954SMARCA2-2021781-ENSP00000324770248 (aa)-F6T8Q0
ENST00000452193SMARCA2-215750-ENSP00000401096182 (aa)-A0A0A0MSS5
ENST00000634931SMARCA2-231939-ENSP00000489433254 (aa)-B1ALG2
ENST00000636501SMARCA2-251100--- (aa)--
ENST00000634403SMARCA2-222497--- (aa)--
ENST00000634760SMARCA2-2275847-ENSP000004892561428 (aa)-A0A0U1RQZ9
ENST00000635030SMARCA2-233571--- (aa)--
ENST00000636758SMARCA2-253100--- (aa)--
ENST00000636157SMARCA2-2473211--- (aa)--
ENST00000637371SMARCA2-26199--- (aa)--
ENST00000457226SMARCA2-216736-ENSP00000415218193 (aa)-F6RS74
ENST00000635185SMARCA2-236683-ENSP00000488947228 (aa)-A0A0U1RQE1
ENST00000637352SMARCA2-260128-ENSP000004907576 (aa)-UPI00080A7E56
ENST00000634772SMARCA2-228810-ENSP00000489518270 (aa)-A0A0U1RRG6
ENST00000636233SMARCA2-249100--- (aa)--
ENST00000635273SMARCA2-238672--- (aa)--
ENST00000635530SMARCA2-242712-ENSP00000489204229 (aa)-A0A0U1RQW7
ENST00000634271SMARCA2-218572--- (aa)--
ENST00000450198SMARCA2-2145602-ENSP000003920811514 (aa)-F6VDE0
ENST00000635688SMARCA2-245616-ENSP0000048955568 (aa)-A0A0U1RRJ4
ENST00000382203SMARCA2-2095867-ENSP000003716381590 (aa)-P51531
ENST00000634343SMARCA2-221792-ENSP00000489615231 (aa)-A0A0U1RRN2
ENST00000634287SMARCA2-219424-ENSP0000048914262 (aa)-A0A0U1RQS1
ENST00000636903SMARCA2-2542471-ENSP00000489968288 (aa)-A0A1B0GU54
ENST00000302401SMARCA2-2012242-ENSP00000305411278 (aa)-B1ALF6
Gene Model
Click here to download ENSG00000080503's gene model file
Pathways
Pathway IDPathway NameSource
hsa04714ThermogenesisKEGG
hsa05225Hepatocellular carcinomaKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000080503Thyrotropin1.10420769167536E-617903292
ENSG00000080503Thyrotropin8.67406199885528E-617903292
ENSG00000080503Electrocardiography1.23538421617179E-817903306
ENSG00000080503Angiography4.88629715162291E-517903301
ENSG00000080503Hand Strength6.23712966631719E-817903295
ENSG00000080503Hand Strength5.93760790749435E-817903295
ENSG00000080503Myocardial Infarction6.2666607E-004-
ENSG00000080503Stroke9.3877195E-004-
ENSG00000080503Respiratory Function Tests9.0520000E-005-
ENSG00000080503Body Fat Distribution6.5200000E-005-
ENSG00000080503Arteries1.9840000E-005-
ENSG00000080503Erythrocyte Count3.8410000E-005-
ENSG00000080503Platelet Function Tests7.7100000E-006-
ENSG00000080503Platelet Function Tests2.4300000E-007-
ENSG00000080503Platelet Function Tests5.3700000E-007-
ENSG00000080503Platelet Function Tests2.1300000E-006-
ENSG00000080503Platelet Function Tests9.0400000E-006-
ENSG00000080503Platelet Function Tests5.7200000E-007-
ENSG00000080503Platelet Function Tests2.7800000E-006-
ENSG00000080503Platelet Function Tests9.1000000E-006-
ENSG00000080503Platelet Function Tests3.0600000E-007-
ENSG00000080503Platelet Function Tests6.6300000E-007-
ENSG00000080503Magnesium2.4280000E-005-
ENSG00000080503Erythropoietin7.2980000E-005-
ENSG00000080503Attention Deficit Disorder with Hyperactivity7E-623453885
ENSG00000080503Bipolar Disorder7E-623453885
ENSG00000080503Child Development Disorders, Pervasive7E-623453885
ENSG00000080503Depressive Disorder7E-623453885
ENSG00000080503Schizophrenia7E-623453885
ENSG00000080503Alopecia2E-624025145
ENSG00000080503Cyclophosphamide2E-624025145
ENSG00000080503Doxorubicin2E-624025145
ENSG00000080503Fluorouracil2E-624025145
ENSG00000080503Amyotrophic lateral sclerosis 11E-624529757
ENSG00000080503Anticoagulants4E-626265036
ENSG00000080503Attention Deficit Disorder with Hyperactivity9E-727890468
ENSG00000080503Bipolar Disorder9E-727890468
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000080503rs1081125691995749?Asthma (childhood onset)27611488[0.11-0.28] unit decrease0.198EFO_0000270
ENSG00000080503rs1051143492114024?Red cell distribution width30595370EFO_0005192
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000080503's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000080503SMARCA29998.000ENSG00000127616SMARCA49990.202
ENSG00000080503SMARCA27465.714ENSG00000173575CHD28962.376
ENSG00000080503SMARCA27837.912ENSG00000119969HELLS6747.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000080503SMARCA29998.000ENSAPOG00000002641SMARCA29780.284Acanthochromis_polyacanthus
ENSG00000080503SMARCA299100.000ENSAMEG00000012325SMARCA210099.218Ailuropoda_melanoleuca
ENSG00000080503SMARCA29795.238ENSACIG00000015607SMARCA29779.743Amphilophus_citrinellus
ENSG00000080503SMARCA29998.000ENSAOCG00000009647-9778.767Amphiprion_ocellaris
ENSG00000080503SMARCA29998.000ENSAPEG00000007646SMARCA29778.803Amphiprion_percula
ENSG00000080503SMARCA29998.000ENSATEG00000006916SMARCA29681.429Anabas_testudineus
ENSG00000080503SMARCA29998.000ENSAPLG00000013873SMARCA29589.536Anas_platyrhynchos
ENSG00000080503SMARCA210095.973ENSACAG00000002423SMARCA210089.765Anolis_carolinensis
ENSG00000080503SMARCA2100100.000ENSANAG00000026498SMARCA210099.119Aotus_nancymaae
ENSG00000080503SMARCA29998.000ENSACLG00000004248SMARCA29780.518Astatotilapia_calliptera
ENSG00000080503SMARCA29998.000ENSAMXG00000012404smarca29782.414Astyanax_mexicanus
ENSG00000080503SMARCA2100100.000ENSBTAG00000007494SMARCA210097.201Bos_taurus
ENSG00000080503SMARCA2100100.000ENSCJAG00000010710SMARCA29999.144Callithrix_jacchus
ENSG00000080503SMARCA2100100.000ENSCAFG00000002013SMARCA210097.774Canis_familiaris
ENSG00000080503SMARCA2100100.000ENSCAFG00020026802SMARCA29894.906Canis_lupus_dingo
ENSG00000080503SMARCA2100100.000ENSCHIG00000025863SMARCA210097.233Capra_hircus
ENSG00000080503SMARCA2100100.000ENSTSYG00000003858SMARCA210098.054Carlito_syrichta
ENSG00000080503SMARCA2100100.000ENSCAPG00000002890SMARCA29993.287Cavia_aperea
ENSG00000080503SMARCA2100100.000ENSCPOG00000005475SMARCA210097.203Cavia_porcellus
ENSG00000080503SMARCA2100100.000ENSCCAG00000030636SMARCA210099.300Cebus_capucinus
ENSG00000080503SMARCA2100100.000ENSCATG00000031470SMARCA210098.856Cercocebus_atys
ENSG00000080503SMARCA210099.329ENSCLAG00000014484SMARCA210097.462Chinchilla_lanigera
ENSG00000080503SMARCA2100100.000ENSCSAG00000008650SMARCA29998.844Chlorocebus_sabaeus
ENSG00000080503SMARCA299100.000ENSCHOG00000004316SMARCA28793.333Choloepus_hoffmanni
ENSG00000080503SMARCA210098.000ENSCPBG00000025463SMARCA210095.115Chrysemys_picta_bellii
ENSG00000080503SMARCA2100100.000ENSCANG00000039597SMARCA210099.245Colobus_angolensis_palliatus
ENSG00000080503SMARCA210098.658ENSCGRG00001002323Smarca210089.579Cricetulus_griseus_chok1gshd
ENSG00000080503SMARCA29597.222ENSCSEG00000019311SMARCA29677.590Cynoglossus_semilaevis
ENSG00000080503SMARCA29998.000ENSCVAG00000016571SMARCA27586.346Cyprinodon_variegatus
ENSG00000080503SMARCA29998.000ENSDARG00000008904smarca29781.707Danio_rerio
ENSG00000080503SMARCA210099.329ENSDNOG00000006402SMARCA210096.226Dasypus_novemcinctus
ENSG00000080503SMARCA210099.408ENSDORG00000014832Smarca210097.550Dipodomys_ordii
ENSG00000080503SMARCA29792.000FBgn0000212brm7156.866Drosophila_melanogaster
ENSG00000080503SMARCA293100.000ENSEBUG00000011442-9669.649Eptatretus_burgeri
ENSG00000080503SMARCA29990.476ENSEBUG00000002449-8968.548Eptatretus_burgeri
ENSG00000080503SMARCA2100100.000ENSEASG00005010312SMARCA210097.333Equus_asinus_asinus
ENSG00000080503SMARCA29998.507ENSEEUG00000015540-6998.611Erinaceus_europaeus
ENSG00000080503SMARCA29998.000ENSELUG00000010318smarca29679.236Esox_lucius
ENSG00000080503SMARCA2100100.000ENSFCAG00000001568SMARCA210097.201Felis_catus
ENSG00000080503SMARCA210097.987ENSFALG00000010416SMARCA210092.760Ficedula_albicollis
ENSG00000080503SMARCA210099.329ENSFDAG00000010502SMARCA29995.833Fukomys_damarensis
ENSG00000080503SMARCA29998.000ENSFHEG00000021250SMARCA29780.319Fundulus_heteroclitus
ENSG00000080503SMARCA29996.000ENSGMOG00000014229SMARCA29777.461Gadus_morhua
ENSG00000080503SMARCA210098.500ENSGALG00000010164SMARCA210091.863Gallus_gallus
ENSG00000080503SMARCA29998.000ENSGAFG00000001164SMARCA29376.443Gambusia_affinis
ENSG00000080503SMARCA29996.000ENSGACG00000014488SMARCA29778.618Gasterosteus_aculeatus
ENSG00000080503SMARCA210097.987ENSGAGG00000024412SMARCA210091.926Gopherus_agassizii
ENSG00000080503SMARCA2100100.000ENSGGOG00000000513SMARCA210089.122Gorilla_gorilla
ENSG00000080503SMARCA29998.000ENSHBUG00000006691SMARCA29580.534Haplochromis_burtoni
ENSG00000080503SMARCA2100100.000ENSHGLG00000005215SMARCA29996.831Heterocephalus_glaber_female
ENSG00000080503SMARCA2100100.000ENSHGLG00100010496SMARCA210095.931Heterocephalus_glaber_male
ENSG00000080503SMARCA29398.000ENSHCOG00000015348-8886.733Hippocampus_comes
ENSG00000080503SMARCA29998.000ENSIPUG00000011060smarca29780.242Ictalurus_punctatus
ENSG00000080503SMARCA210099.329ENSSTOG00000006812SMARCA210098.116Ictidomys_tridecemlineatus
ENSG00000080503SMARCA210099.408ENSJJAG00000010867Smarca210097.586Jaculus_jaculus
ENSG00000080503SMARCA29998.000ENSKMAG00000015844-9879.987Kryptolebias_marmoratus
ENSG00000080503SMARCA210082.870ENSLACG00000000270SMARCA25787.002Latimeria_chalumnae
ENSG00000080503SMARCA29998.000ENSLOCG00000011499smarca29783.429Lepisosteus_oculatus
ENSG00000080503SMARCA210099.329ENSLAFG00000014061SMARCA28398.018Loxodonta_africana
ENSG00000080503SMARCA2100100.000ENSMFAG00000003814SMARCA210097.673Macaca_fascicularis
ENSG00000080503SMARCA2100100.000ENSMMUG00000015279SMARCA210099.308Macaca_mulatta
ENSG00000080503SMARCA2100100.000ENSMNEG00000041069SMARCA210098.681Macaca_nemestrina
ENSG00000080503SMARCA2100100.000ENSMLEG00000027418SMARCA210096.478Mandrillus_leucophaeus
ENSG00000080503SMARCA29998.000ENSMAMG00000003056SMARCA29782.117Mastacembelus_armatus
ENSG00000080503SMARCA29998.000ENSMZEG00005020709SMARCA29780.670Maylandia_zebra
ENSG00000080503SMARCA210091.192ENSMGAG00000005160-10077.822Meleagris_gallopavo
ENSG00000080503SMARCA210099.408ENSMICG00000005162SMARCA210098.176Microcebus_murinus
ENSG00000080503SMARCA210098.658ENSMOCG00000001611Smarca210097.206Microtus_ochrogaster
ENSG00000080503SMARCA29597.222ENSMMOG00000014196SMARCA29779.216Mola_mola
ENSG00000080503SMARCA29999.441ENSMODG00000003578SMARCA210094.211Monodelphis_domestica
ENSG00000080503SMARCA29998.000ENSMALG00000009611SMARCA29780.772Monopterus_albus
ENSG00000080503SMARCA210099.329MGP_CAROLIEiJ_G0022841Smarca210096.861Mus_caroli
ENSG00000080503SMARCA299100.000ENSMUSG00000024921Smarca299100.000Mus_musculus
ENSG00000080503SMARCA210099.329MGP_PahariEiJ_G0014334Smarca210097.150Mus_pahari
ENSG00000080503SMARCA210098.658MGP_SPRETEiJ_G0023759Smarca29998.152Mus_spretus
ENSG00000080503SMARCA299100.000ENSMPUG00000005171SMARCA29499.219Mustela_putorius_furo
ENSG00000080503SMARCA2100100.000ENSMLUG00000002342SMARCA29990.391Myotis_lucifugus
ENSG00000080503SMARCA29998.901ENSNGAG00000000108Smarca29996.103Nannospalax_galili
ENSG00000080503SMARCA29398.000ENSNBRG00000017998SMARCA29483.085Neolamprologus_brichardi
ENSG00000080503SMARCA2100100.000ENSNLEG00000008575SMARCA210095.802Nomascus_leucogenys
ENSG00000080503SMARCA298100.000ENSMEUG00000009812SMARCA210085.660Notamacropus_eugenii
ENSG00000080503SMARCA210098.658ENSOPRG00000013474SMARCA29498.200Ochotona_princeps
ENSG00000080503SMARCA210099.329ENSODEG00000005452SMARCA29996.350Octodon_degus
ENSG00000080503SMARCA29998.000ENSONIG00000014163SMARCA27887.281Oreochromis_niloticus
ENSG00000080503SMARCA29998.000ENSOANG00000008299-9598.248Ornithorhynchus_anatinus
ENSG00000080503SMARCA2100100.000ENSOCUG00000006320SMARCA210097.090Oryctolagus_cuniculus
ENSG00000080503SMARCA29998.000ENSORLG00000020820SMARCA210078.403Oryzias_latipes
ENSG00000080503SMARCA29998.000ENSORLG00015006289SMARCA210078.403Oryzias_latipes_hsok
ENSG00000080503SMARCA29998.000ENSOMEG00000009736-9780.013Oryzias_melastigma
ENSG00000080503SMARCA210099.408ENSOGAG00000017053SMARCA29994.312Otolemur_garnettii
ENSG00000080503SMARCA299100.000ENSOARG00000013265SMARCA210095.492Ovis_aries
ENSG00000080503SMARCA2100100.000ENSPPAG00000038717SMARCA210095.990Pan_paniscus
ENSG00000080503SMARCA2100100.000ENSPPRG00000001879SMARCA210097.265Panthera_pardus
ENSG00000080503SMARCA2100100.000ENSPTRG00000051168SMARCA210097.425Pan_troglodytes
ENSG00000080503SMARCA2100100.000ENSPANG00000025121SMARCA210091.724Papio_anubis
ENSG00000080503SMARCA29998.000ENSPKIG00000018469-10082.390Paramormyrops_kingsleyae
ENSG00000080503SMARCA29998.889ENSPSIG00000006284SMARCA210091.238Pelodiscus_sinensis
ENSG00000080503SMARCA29594.444ENSPMGG00000013696-9774.870Periophthalmus_magnuspinnatus
ENSG00000080503SMARCA210099.329ENSPEMG00000019821Smarca210096.673Peromyscus_maniculatus_bairdii
ENSG00000080503SMARCA299100.000ENSPMAG00000005337-9472.548Petromyzon_marinus
ENSG00000080503SMARCA29998.000ENSPMAG00000001030-10081.399Petromyzon_marinus
ENSG00000080503SMARCA29999.441ENSPCIG00000015658SMARCA210094.402Phascolarctos_cinereus
ENSG00000080503SMARCA29998.000ENSPFOG00000001856SMARCA29779.159Poecilia_formosa
ENSG00000080503SMARCA29998.000ENSPLAG00000017829SMARCA29677.505Poecilia_latipinna
ENSG00000080503SMARCA29998.000ENSPMEG00000001815-9776.240Poecilia_mexicana
ENSG00000080503SMARCA29998.000ENSPREG00000013800SMARCA29677.337Poecilia_reticulata
ENSG00000080503SMARCA210099.482ENSPPYG00000019258SMARCA210098.791Pongo_abelii
ENSG00000080503SMARCA29896.721ENSPCAG00000016969SMARCA27886.973Procavia_capensis
ENSG00000080503SMARCA210099.408ENSPCOG00000025709SMARCA210096.354Propithecus_coquereli
ENSG00000080503SMARCA29999.441ENSPVAG00000000901SMARCA29598.421Pteropus_vampyrus
ENSG00000080503SMARCA29998.000ENSPNYG00000004533SMARCA29776.918Pundamilia_nyererei
ENSG00000080503SMARCA29998.000ENSPNAG00000014635smarca29682.803Pygocentrus_nattereri
ENSG00000080503SMARCA29999.441ENSRNOG00000011931Smarca210096.681Rattus_norvegicus
ENSG00000080503SMARCA2100100.000ENSRBIG00000038618SMARCA210096.819Rhinopithecus_bieti
ENSG00000080503SMARCA2100100.000ENSRROG00000019271SMARCA210097.987Rhinopithecus_roxellana
ENSG00000080503SMARCA2100100.000ENSSBOG00000034827SMARCA210095.196Saimiri_boliviensis_boliviensis
ENSG00000080503SMARCA29999.441ENSSHAG00000007884SMARCA210093.702Sarcophilus_harrisii
ENSG00000080503SMARCA29998.000ENSSFOG00015014870SMARCA29785.510Scleropages_formosus
ENSG00000080503SMARCA29998.000ENSSMAG00000013707SMARCA29879.682Scophthalmus_maximus
ENSG00000080503SMARCA29998.000ENSSDUG00000008852-9680.844Seriola_dumerili
ENSG00000080503SMARCA29795.238ENSSLDG00000025449SMARCA29680.597Seriola_lalandi_dorsalis
ENSG00000080503SMARCA29998.000ENSSARG00000007888SMARCA29596.842Sorex_araneus
ENSG00000080503SMARCA29998.000ENSSPUG00000001629SMARCA29885.836Sphenodon_punctatus
ENSG00000080503SMARCA29998.000ENSSPAG00000020091-9780.077Stegastes_partitus
ENSG00000080503SMARCA2100100.000ENSSSCG00000005232SMARCA210097.296Sus_scrofa
ENSG00000080503SMARCA210097.987ENSTGUG00000005460SMARCA210090.273Taeniopygia_guttata
ENSG00000080503SMARCA29795.238ENSTRUG00000015619SMARCA29779.949Takifugu_rubripes
ENSG00000080503SMARCA29999.441ENSTBEG00000008767SMARCA274100.000Tupaia_belangeri
ENSG00000080503SMARCA29999.441ENSTTRG00000002033SMARCA210093.648Tursiops_truncatus
ENSG00000080503SMARCA299100.000ENSUAMG00000024701SMARCA29995.150Ursus_americanus
ENSG00000080503SMARCA299100.000ENSVPAG00000001204SMARCA210087.620Vicugna_pacos
ENSG00000080503SMARCA2100100.000ENSVVUG00000004598SMARCA29995.913Vulpes_vulpes
ENSG00000080503SMARCA210092.617ENSXETG00000015299smarca28287.557Xenopus_tropicalis
ENSG00000080503SMARCA29998.000ENSXCOG00000011073SMARCA29779.335Xiphophorus_couchianus
ENSG00000080503SMARCA29998.000ENSXMAG00000015611SMARCA29578.631Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II17938176.TASProcess
GO:0000790nuclear chromatin12065415.IDAComponent
GO:0003682chromatin binding-IEAFunction
GO:0003713transcription coactivator activity17984088.IDAFunction
GO:0004386helicase activity-IEAFunction
GO:0005515protein binding12065415.12200431.15107404.15696166.16341228.16601680.17984088.20111005.25910212.26787460.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus17984088.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0006338chromatin remodeling22368283.IMPProcess
GO:0006338chromatin remodeling17938176.TASProcess
GO:0006355regulation of transcription, DNA-templated8670841.TASProcess
GO:0006357regulation of transcription by RNA polymerase II8223438.TASProcess
GO:0007286spermatid development-IEAProcess
GO:0007399nervous system development-IEAProcess
GO:0008094DNA-dependent ATPase activity17938176.TASFunction
GO:0008285negative regulation of cell proliferation14660596.IDAProcess
GO:0016514SWI/SNF complex11078522.IDAComponent
GO:0030308negative regulation of cell growth12065415.IMPProcess
GO:0042393histone binding-IEAFunction
GO:0043231intracellular membrane-bounded organelle-IDAComponent
GO:0044212transcription regulatory region DNA binding17984088.IDAFunction
GO:0045111intermediate filament cytoskeleton-IDAComponent
GO:0045892negative regulation of transcription, DNA-templated12065415.IDAProcess
GO:0045893positive regulation of transcription, DNA-templated17984088.IDAProcess
GO:0045893positive regulation of transcription, DNA-templated8208605.IMPProcess
GO:0045944positive regulation of transcription by RNA polymerase II15774904.IDAProcess
GO:0045944positive regulation of transcription by RNA polymerase II17938176.TASProcess
GO:0071564npBAF complex-ISSComponent
GO:0071565nBAF complex-ISSComponent
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