EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
22393060The helicase HAGE expressed by malignant melanoma-initiating cells is required for tumor cell proliferation in vivo.J Biol Chem2012 Apr 20Linley AJdoi: 10.1074/jbc.M111.308973
26240276HAGE in Triple-Negative Breast Cancer Is a Novel Prognostic, Predictive, and Actionable Biomarker: A Transcriptomic and Protein Expression Analysis.Clin Cancer Res2016 Feb 15Abdel-Fatah TMdoi: 10.1158/1078-0432.CCR-15-0610
17487488HAGE, a cancer/testis antigen with potential for melanoma immunotherapy: identification of several MHC class I/II HAGE-derived immunogenic peptides.Cancer Immunol Immunother2007 DecMathieu MG-

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr673408074Silentrs371608743F384F0.46
BLCAchr673395035Missense_MutationNAS44G0.72
BLCAchr673406407Missense_Mutationrs748090175G284A0.26KH_1
BLCAchr673416200Nonsense_MutationnovelQ641*0.13
BLCAchr673414680Missense_MutationnovelR580T0.33
BLCAchr673409334SilentNAQ422Q0.26
BRCAchr673414045Frame_Shift_DelNAD525Ifs*60.13
BRCAchr673395000Missense_MutationNAA32V0.42
BRCAchr673416197Missense_MutationNAP640S0.47
BRCAchr673404769Missense_MutationnovelW216C0.08
BRCAchr673394992Missense_MutationNAR29S0.33
BRCAchr6733948775'UTRnovel0.18
BRCAchr673413684SilentnovelI465I0.05
BRCAchr673416112Splice_SitenovelX612_splice0.11
BRCAchr673406422Missense_MutationnovelG289E0.13KH_1
BRCAchr673394982Missense_MutationnovelA26G0.1
CESCchr673412250Missense_MutationNAL442F0.25
CESCchr6733944155'Flanknovel0.15
CESCchr673407552Missense_MutationNAT325N0.44KH_1
CESCchr673405747Frame_Shift_DelnovelC241*0.11
COADchr673395145SilentNAG80G0.3
COADchr673401879Missense_MutationnovelV153I0.28
COADchr673414655Missense_Mutationrs372223699V572I0.1
COADchr6733948875'UTRnovel0.27
COADchr673408009Frame_Shift_DelNAG365Vfs*20.39KH_1
COADchr673414606Silentrs555241829D555D0.46
COADchr673408009Frame_Shift_DelNAG365Vfs*20.31KH_1
COADchr673397691Missense_MutationNAR85C0.14
COADchr673395075Missense_MutationNAP57L0.21
COADchr673405825Missense_MutationNAT266I0.11KH_1
COADchr673395145SilentNAG80G0.36
COADchr673401857Splice_SitenovelX146_splice0.27
COADchr673407611Missense_Mutationrs749946933R345W0.15KH_1
COADchr6733944745'Flanknovel0.38
COADchr673400270Missense_MutationNAF115V0.32
COADchr673414557Missense_MutationNAR539I0.23
COADchr673395155Missense_MutationNAG84S0.57
ESCAchr673401972Frame_Shift_InsNAT186Nfs*100.4
GBMchr673415499Missense_MutationnovelR583K0.11
GBMchr673405728Nonsense_Mutationrs199611536R234*0.29
GBMchr673397694Missense_MutationnovelG86R0.31
GBMchr673407591Missense_MutationnovelK338T0.22KH_1
GBMchr673409317Missense_MutationnovelV417L0.03KH_1
HNSCchr673397689Frame_Shift_DelnovelR85Wfs*470.27
HNSCchr673395010SilentnovelL35L0.26
HNSCchr673394983SilentnovelA26A0.19
HNSCchr673394984Missense_MutationnovelP27T0.19
HNSCchr673404742Frame_Shift_InsnovelM208Nfs*80.44
HNSCchr673406451Missense_MutationnovelP299T0.53KH_1
KIRPchr673414681Missense_MutationnovelR580S0.43
KIRPchr673409304SilentNAK412K0.51
LAMLchr673414059Missense_MutationnovelA529V0.06
LGGchr673394917SilentNAH4H0.09
LGGchr673395041Missense_MutationnovelG46S0.38
LGGchr673413735Missense_MutationNAQ482H0.39
LGGchr673408066Missense_MutationNAS382G0.69KH_1
LGGchr673400270Nonsense_MutationnovelF115Sfs*30.07
LIHCchr673409265Missense_MutationNAD399E0.22KH_1
LIHCchr673412230Missense_MutationNAR436S0.56KH_1
LIHCchr673413972Missense_Mutationrs144361613A500V0.3
LUADchr673406414SilentnovelA286A0.09
LUADchr673407528Missense_MutationnovelP317H0.21KH_1
LUADchr673413764Missense_MutationNAV492A0.16
LUADchr673395010Missense_MutationNAL35F0.3
LUADchr673395002Missense_MutationNAE33K0.48
LUADchr673414637Missense_Mutationrs142525774R566W0.39
LUADchr673412230Missense_MutationNAR436S0.23KH_1
LUADchr673408086SilentNAK388K0.21
LUADchr6733949045'UTRnovel0.37
LUADchr673413786Splice_SitenovelX499_splice0.54
LUSCchr673407967Missense_MutationnovelV349I0.24KH_1
LUSCchr673414600SilentnovelV553V0.2
LUSCchr673394954Frame_Shift_DelnovelR18Vfs*180.19
LUSCchr673394917SilentNAH4H0.18
LUSCchr673413682Missense_MutationnovelI465L0.07
LUSCchr673413695Missense_MutationnovelT469N0.32
LUSCchr673414662Missense_MutationNAR574Q0.11
LUSCchr6733948905'UTRrs7521958790.28
LUSCchr673407984SilentNAN354N0.38
OVchr673405758Missense_MutationnovelD244N0.04
OVchr673405696Missense_MutationnovelI223R0.07
OVchr673406431Missense_MutationnovelK292T0.07KH_1
OVchr673394999Frame_Shift_InsnovelA32Vfs*110.04
OVchr673406427Nonsense_MutationnovelG291*0.07KH_1
OVchr673409271Missense_MutationnovelM401I0.08KH_1
OVchr673415500Missense_MutationNAR583S0.19
OVchr673416166SilentnovelQ629Q0.19
OVchr673395145SilentNAG80G0.45
OVchr673395040SilentNAV45V0.04
OVchr673405699Missense_MutationnovelT224M0.09
PAADchr673395092Missense_MutationNAA63T0.05
PAADchr6733948815'UTRrs7514000410.2
PAADchr673405763Silentrs369730596D245D0.19
PRADchr673401983Missense_MutationNAK187N0.37
READchr673414046Missense_MutationnovelD525Y0.13
READchr673394978Nonsense_MutationNAR25*0.48
READchr673412262Missense_MutationnovelM446I0.2
SKCMchr673405679Splice_RegionnovelR217R0.22
SKCMchr673407505Splice_RegionnovelS309S0.3
SKCMchr673407980Missense_MutationNAG353E0.46KH_1
SKCMchr673409280Missense_MutationnovelM404I0.38KH_1
SKCMchr673400293Silentrs140241372T122T0.27
SKCMchr673406391Missense_MutationNAG279R0.29KH_1
SKCMchr673414030SilentnovelG519G0.43
SKCMchr673414031Missense_MutationNAD520N0.44
SKCMchr673394992Silentrs780562383R29R0.35
SKCMchr673408026SilentNAI368I0.41
SKCMchr673394991Missense_MutationNAR29K0.12
SKCMchr673395075Missense_MutationNAP57L0.22
SKCMchr6733948415'UTRnovel0.39
SKCMchr673408074Silentrs371608743F384F0.47
SKCMchr673406477SilentNAQ307Q0.27
SKCMchr673395014Nonsense_MutationNAR37*0.28
SKCMchr673414031Missense_MutationNAD520N0.09
SKCMchr6733947465'Flanknovel0.27
SKCMchr673405725Missense_MutationNAK233E0.21
SKCMchr6733947975'UTRnovel0.42
SKCMchr673395015Missense_MutationNAR37Q0.07
SKCMchr673401948Missense_MutationNAI176V0.68
SKCMchr673405815Nonsense_MutationNAQ263*0.45
SKCMchr673400358Missense_MutationNAG144E0.25
SKCMchr673394915Missense_MutationNAH4Y0.22
SKCMchr673395014Nonsense_MutationNAR37*0.23
SKCMchr6733948935'UTRrs3770842910.33
SKCMchr673414635Missense_MutationnovelP565L0.41
SKCMchr673394911SilentNAS2S0.46
STADchr673395010Missense_MutationNAL35F0.3
STADchr673408009Nonsense_MutationNAK363*0.34KH_1
STADchr673413764Missense_MutationNAV492A0.24
STADchr673414035Missense_MutationNAR521T0.18
STADchr673400324Frame_Shift_DelnovelK134Sfs*20.18
STADchr673406421Nonsense_MutationnovelG289*0.34KH_1
STADchr6733947555'UTRnovel0.31
STADchr673400342Missense_MutationNAY139D0.1
STADchr673408009Frame_Shift_DelNAG365Vfs*20.46KH_1
STADchr673405758Missense_MutationNAD244Y0.34
STADchr673408009Frame_Shift_DelNAG365Vfs*20.15KH_1
STADchr673416161Nonsense_MutationnovelQ628*0.26
STADchr673413972Missense_Mutationrs144361613A500V0.49
THCAchr673400268Frame_Shift_InsnovelF115Yfs*170.1
THYMchr673405755Missense_MutationnovelF243L0.05
THYMchr6733944145'Flanknovel0.07
UCECchr673408049Missense_MutationNAL376S0.32KH_1
UCECchr673406402SilentnovelL282L0.25
UCECchr673397691Missense_MutationNAR85C0.39
UCECchr673406375Nonsense_MutationnovelW273*0.38KH_1
UCECchr673409303Missense_MutationnovelK412M0.37KH_1
UCECchr6733943645'Flanknovel0.3
UCECchr673405736Frame_Shift_DelnovelN238Ifs*430.42
UCECchr673413659Missense_MutationnovelA457V0.5
UCECchr6733948795'UTRnovelG5Vfs*260.2
UCECchr673407970Missense_MutationnovelY350H0.31KH_1
UCECchr673407549Missense_MutationnovelP324L0.38KH_1
UCECchr673394960Nonsense_MutationnovelR19*0.43
UCECchr673408098SilentnovelY392Y0.33
UCECchr673406371Missense_Mutationrs765560891A272V0.15KH_1
UCECchr673405791Missense_MutationnovelE255K0.16
UCECchr673408071Missense_MutationNAN383K0.38KH_1
UCECchr6733947925'UTRnovel0.6
UCECchr6733943895'Flanknovel0.33
UCECchr673413773Missense_MutationnovelS495Y0.26
UCECchr673409320Missense_MutationnovelR418C0.38KH_1
UCECchr673395154Splice_RegionnovelI83I0.46
UCECchr673406435Silentrs748765728T293T0.21
UCECchr673414654Silentrs751830613Y571Y0.38
UCECchr673415511Missense_MutationnovelS587F0.22
UCECchr673414625Missense_Mutationrs768484256F562L0.2
UCECchr673397691Missense_MutationNAR85C0.43
UCECchr673407611Missense_Mutationrs749946933R345W0.51KH_1
UCECchr673394925Missense_MutationnovelA7V0.46
UCECchr673401862Missense_MutationnovelT147I0.16
UCECchr673404734Missense_MutationnovelT205A0.37
UCECchr6733948415'UTRnovel0.67
UCECchr673409268Missense_MutationNAK400N0.46KH_1
UCECchr673416117Missense_MutationnovelI613S0.44
UCECchr673397691Missense_MutationNAR85C0.32
UCECchr673405689Missense_MutationNAF221V0.33
UCECchr673397691Missense_MutationNAR85C0.09
UCECchr673414014Missense_MutationnovelV514A0.59
UCECchr673413659Missense_MutationNAA457D0.28
UCECchr673416198Missense_MutationnovelP640H0.05
UCECchr673409308Missense_MutationnovelL414V0.38KH_1
UCSchr673414581Missense_MutationnovelA547V0.42

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BLCADEL0.29663.4915e-05
CHOLDEL0.55560.022382
ESCADEL0.20110.036953
LUADDEL0.3430.0021365
MESODEL0.27590.05642
PAADDEL0.29350.11274
SARCDEL0.24120.0021591
SKCMDEL0.37871.5442e-06
STADDEL0.12020.0044196

Survival Analysis
CancerP-value Q-value
ACC0.01

Kaplan-Meier Survival Analysis

HNSC0.00048

Kaplan-Meier Survival Analysis

SKCM0.018

Kaplan-Meier Survival Analysis

BRCA0.0092

Kaplan-Meier Survival Analysis

DLBC0.05

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000080007 (Gene tree)
Gene ID
55510
Gene Symbol
DDX43
Alias
HAGE|DKFZp434H2114|CT13
Full Name
DEAD-box helicase 43
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
23,008 bases
Position
chr6:73,394,562-73,417,569
Accession
18677
RBP type
canonical RBP
Summary
The protein encoded by this gene is an ATP-dependent RNA helicase in the DEAD-box family and displays tumor-specific expression. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000359361KH_1PF00013.297.9e-1211
ENSP00000359361DEADPF00270.292.7e-4311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
28468824The DEAD-box protein DDX43 (HAGE) is a dual RNA-DNA helicase and has a K-homology domain required for full nucleic acid unwinding activity.J Biol Chem2017 Jun 23Talwar Tdoi: 10.1074/jbc.M117.774950
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000464221DDX43-202568--- (aa)--
ENST00000370336DDX43-2012513-ENSP00000359361648 (aa)-Q9NXZ2
ENST00000479773DDX43-203652--- (aa)--
Gene Model
Click here to download ENSG00000080007's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000080007Creatinine7.2950000E-006-
ENSG00000080007Creatinine5.0790000E-006-
ENSG00000080007Creatinine2.3390000E-005-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000080007's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000080007DDX435533.241ENSG00000110367DDX67333.241
ENSG00000080007DDX436032.857ENSG00000123064DDX549039.175
ENSG00000080007DDX436137.164ENSG00000183258DDX418034.752
ENSG00000080007DDX435734.133ENSG00000156976EIF4A29034.133
ENSG00000080007DDX436833.260ENSG00000278053DDX527732.427
ENSG00000080007DDX435634.877ENSG00000141543EIF4A38734.877
ENSG00000080007DDX435630.534ENSG00000182810DDX287330.534
ENSG00000080007DDX435331.500ENSG00000125485DDX315331.500
ENSG00000080007DDX435135.608ENSG00000088205DDX188233.846
ENSG00000080007DDX436133.741ENSG00000105671DDX498233.741
ENSG00000080007DDX436842.637ENSG00000100201DDX176357.143
ENSG00000080007DDX436335.194ENSG00000213782DDX478635.194
ENSG00000080007DDX435636.512ENSG00000124228DDX278432.618
ENSG00000080007DDX435331.856ENSG00000111364DDX558735.119
ENSG00000080007DDX435940.506ENSG00000152670DDX46840.506
ENSG00000080007DDX436843.430ENSG00000108654DDX510056.522
ENSG00000080007DDX439661.821ENSG00000184735DDX539961.821
ENSG00000080007DDX435230.259ENSG00000109832DDX257245.833
ENSG00000080007DDX436035.427ENSG00000118197DDX599832.883
ENSG00000080007DDX435740.674ENSG00000067048DDX3Y5840.674
ENSG00000080007DDX436039.312ENSG00000215301DDX3X8539.312
ENSG00000080007DDX435436.240ENSG00000165732DDX215036.240
ENSG00000080007DDX435934.635ENSG00000161960EIF4A19636.196
ENSG00000080007DDX436241.419ENSG00000174243DDX235241.419
ENSG00000080007DDX436837.389ENSG00000198231DDX426237.389
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000080007DDX4310087.654ENSANAG00000028687DDX4310087.654Aotus_nancymaae
ENSG00000080007DDX4310087.809ENSCJAG00000009966DDX4310087.809Callithrix_jacchus
ENSG00000080007DDX4310079.353ENSTSYG00000003652DDX4310079.353Carlito_syrichta
ENSG00000080007DDX4310077.932ENSCCAG00000037349DDX4310077.932Cebus_capucinus
ENSG00000080007DDX4310096.759ENSCATG00000031875DDX4310096.759Cercocebus_atys
ENSG00000080007DDX4310096.308ENSCSAG00000013999DDX4310096.308Chlorocebus_sabaeus
ENSG00000080007DDX4310096.759ENSCANG00000029269DDX4310096.759Colobus_angolensis_palliatus
ENSG00000080007DDX4310098.765ENSGGOG00000016092DDX4310098.765Gorilla_gorilla
ENSG00000080007DDX4310096.759ENSMFAG00000043087DDX4310096.759Macaca_fascicularis
ENSG00000080007DDX4310096.759ENSMMUG00000019599DDX4310096.759Macaca_mulatta
ENSG00000080007DDX4310092.593ENSMNEG00000038522DDX4310092.593Macaca_nemestrina
ENSG00000080007DDX4310096.142ENSMLEG00000041961DDX4310096.142Mandrillus_leucophaeus
ENSG00000080007DDX438281.132ENSMICG00000017145DDX4310081.132Microcebus_murinus
ENSG00000080007DDX4310096.148ENSNLEG00000001209DDX4310096.148Nomascus_leucogenys
ENSG00000080007DDX4310078.923ENSOGAG00000013660DDX4310078.923Otolemur_garnettii
ENSG00000080007DDX4310099.074ENSPPAG00000034199DDX4310099.074Pan_paniscus
ENSG00000080007DDX4310072.111ENSPPRG00000014528DDX439972.111Panthera_pardus
ENSG00000080007DDX4310099.074ENSPTRG00000018344DDX4310099.074Pan_troglodytes
ENSG00000080007DDX4310096.605ENSPANG00000005686DDX4310096.605Papio_anubis
ENSG00000080007DDX4310097.222ENSPPYG00000016774DDX4310097.222Pongo_abelii
ENSG00000080007DDX438270.998ENSPCOG00000020123DDX4310071.321Propithecus_coquereli
ENSG00000080007DDX438297.164ENSRBIG00000043253DDX4310097.164Rhinopithecus_bieti
ENSG00000080007DDX4310095.988ENSRROG00000031424DDX4310095.988Rhinopithecus_roxellana
ENSG00000080007DDX4310077.623ENSSBOG00000024961DDX4310077.623Saimiri_boliviensis_boliviensis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-IEAFunction
GO:0004004ATP-dependent RNA helicase activity10919659.TASFunction
GO:0005524ATP binding-IEAFunction
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