EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
27826041SMC1A recruits tumor-associated-fibroblasts (TAFs) and promotes colorectal cancer metastasis.Cancer Lett2017 Jan 28Zhou Pdoi: 10.1016/j.canlet.2016.10.041
23717600Role of SMC1 in overcoming drug resistance in triple negative breast cancer.PLoS One2013 May 22Yadav Sdoi: 10.1371/journal.pone.0064338
26781859SMC1 promotes epithelial-mesenchymal transition in triple-negative breast cancer through upregulating Brachyury.Oncol Rep2016 AprLi Kdoi: 10.3892/or.2016.4564
26637483Downregulation of SMC1A inhibits growth and increases apoptosis and chemosensitivity of colorectal cancer cells.J Int Med Res2016 FebLi Jdoi: 10.1177/0300060515600188
25884313Role of SMC1A overexpression as a predictor of poor prognosis in late stage colorectal cancer.BMC Cancer2015 Mar 4Wang Jdoi: 10.1186/s12885-015-1085-4.
27667360SMC1A promotes growth and migration of prostate cancer in vitro and in vivo.Int J Oncol2016 NovPan XWdoi: 10.3892/ijo.2016.3697
27739523FOXA and master transcription factors recruit Mediator and Cohesin to the core transcriptional regulatory circuitry of cancer cells.Sci Rep2016 Oct 14Fournier Mdoi: 10.1038/srep34962.

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchrX53413097SilentnovelA219A0.15
ACCchrX53383203SilentnovelQ1008Q0.29
ACCchrX53403849SilentnovelR747R0.42
BLCAchrX53403609Missense_MutationnovelE793K0.67
BLCAchrX53380622Missense_MutationnovelE1206K0.47
BLCAchrX53403817Missense_MutationnovelR758P0.23
BLCAchrX53399676Missense_MutationnovelK825N0.55
BLCAchrX53415011Missense_MutationnovelE90K0.13
BLCAchrX53405657Missense_MutationnovelE583K0.8
BLCAchrX53414978Splice_Regionnovel0.89
BLCAchrX53412037Missense_MutationnovelE357D0.96
BLCAchrX53412139Missense_MutationnovelQ323H0.93
BLCAchrX53382581SilentnovelF1070F0.42
BLCAchrX53405609Missense_MutationnovelR599C1
BLCAchrX53414832Nonsense_MutationnovelQ113*0.27
BLCAchrX53405795Silentrs782653434T569T0.55
BLCAchrX53412039Missense_MutationNAE357K0.31
BLCAchrX53421968Intronnovel0.5
BLCAchrX53405098Missense_MutationnovelQ704E0.7
BLCAchrX53409163Nonsense_MutationNAE482*0.25
BLCAchrX53405657Missense_MutationnovelE583Q0.21
BLCAchrX53382270Missense_MutationnovelK1133N0.62
BRCAchrX53382276SilentNAG1131G0.16
BRCAchrX53382521SilentNAR1090R0.41
BRCAchrX53396293SilentNAA932A0.21
BRCAchrX53396294Missense_MutationNAA932D0.21
BRCAchrX53412094In_Frame_DelNAK338del0.31
BRCAchrX53405034Missense_MutationnovelR725Q0.36
BRCAchrX53411873Missense_MutationnovelE381V0.04
BRCAchrX53412224Missense_MutationNAR295Q0.36
BRCAchrX53396375Missense_MutationNAM905K0.16
BRCAchrX53409193Nonsense_MutationNAE472*0.11
BRCAchrX53409498Missense_MutationnovelK420N0.09
BRCAchrX53405523SilentNAR627R0.12
BRCAchrX53412240Missense_MutationNAE290Q0.7
BRCAchrX53380646Missense_Mutationrs782175064E1198K0.07
BRCAchrX53411767Missense_MutationnovelE416D0.09
CESCchrX53403582Missense_MutationNAE802K0.17
CESCchrX53382356Missense_MutationnovelE1105Q0.12
CESCchrX53380629SilentNAV1203V0.26
CESCchrX53411861Missense_MutationNAR385T0.11
CESCchrX53412187Missense_MutationnovelH307Q0.38
CESCchrX533772363'UTRnovel0.33
CESCchrX534226485'UTRrs7818265180.41
CESCchrX53412247In_Frame_DelnovelK287del0.26
CESCchrX53404901Intronnovel0.38
CESCchrX53411799Missense_MutationNAR406C0.37
CESCchrX53412905Missense_MutationnovelE283D0.35
CESCchrX53405017Missense_MutationnovelL731V0.1
CESCchrX53403663Missense_MutationnovelE775K0.23
CESCchrX53413023Nonsense_MutationNAS244*0.18
CESCchrX533777793'UTRnovel0.23
CESCchrX533772973'UTRnovel0.27
CESCchrX53403604Missense_MutationNAE794D0.14
CHOLchrX533779133'UTRnovel0.25
COADchrX53421910Intronnovel0.39
COADchrX53405076Missense_Mutationrs782176647R711L0.5
COADchrX53412117Missense_MutationNAG331C0.42
COADchrX53413261Missense_Mutationrs587784422R196C0.23
COADchrX53380150Missense_MutationnovelD1219N0.78
COADchrX53403590Missense_MutationnovelR799Q0.08
COADchrX53405131Missense_MutationnovelR693W0.2
COADchrX53405359SilentnovelK648K0.42
COADchrX53405527Missense_Mutationrs587784407R626H0.58
COADchrX53380708Missense_MutationnovelQ1177R0.41
COADchrX53412051Missense_Mutationrs781862992R353W0.69
COADchrX53409482Missense_MutationNAR426W0.44
COADchrX53405355Nonsense_MutationnovelG650*0.29
COADchrX53399599Missense_MutationnovelK851T0.33
COADchrX53405362Missense_MutationNAQ647H0.46
COADchrX53413284Missense_MutationNAR188H0.29
COADchrX53409232SilentnovelL459L0.21
COADchrX53382613Missense_MutationNAE1060K0.7
COADchrX53413285Missense_MutationNAR188C0.32
COADchrX53412113Missense_MutationnovelD332V0.05
COADchrX53409135Missense_MutationNAR491H0.46
COADchrX53412195Missense_MutationnovelT305S0.31
COADchrX53409082Missense_MutationNAR509C0.36
COADchrX533798893'UTRnovel0.32
GBMchrX53413059In_Frame_DelnovelN231_E232delinsK0.42
GBMchrX53412899Splice_SiteNAX285_splice0.33
GBMchrX53405390Missense_MutationNAT638K0.89
GBMchrX53405827Missense_MutationnovelY559H0.03
GBMchrX53422538Missense_MutationnovelI21M0.13
GBMchrX53412194Missense_MutationNAT305N0.28
GBMchrX53405557Missense_MutationnovelA616V0.61
GBMchrX53409205Missense_MutationnovelR468W0.26
GBMchrX53412244SilentnovelD288D0.3
GBMchrX53405660Missense_MutationNAD582Y0.5
GBMchrX53409169Missense_MutationnovelV480L0.04
GBMchrX53403813Missense_MutationnovelE759D0.2
HNSCchrX53405608Missense_MutationnovelR599H0.7
HNSCchrX53412211Missense_MutationnovelI299M0.5
HNSCchrX53396344SilentnovelI915I0.91
HNSCchrX53399595SilentnovelL852L0.37
HNSCchrX53394811Missense_MutationnovelE980D0.14
HNSCchrX53415092In_Frame_DelnovelV58_R62del0.25
KIRCchrX53403888Frame_Shift_DelnovelK734Nfs*80.31
KIRPchrX53413352SilentNAA165A0.8
KIRPchrX53381064Missense_MutationNAV1154D0.43
KIRPchrX53415085In_Frame_DelnovelI65del0.3
LAMLchrX53409147Missense_MutationnovelA487G1
LAMLchrX53396617Nonsense_Mutationrs781935129E855*0.96
LAMLchrX53382278Missense_MutationNAG1131R0.1
LAMLchrX53399704Missense_MutationNAR816H0.15
LAMLchrX53382311Missense_MutationnovelK1120E0.31
LGGchrX53413285Missense_MutationNAR188C0.93
LGGchrX53405871Missense_MutationnovelA544V0.8
LGGchrX53396301Silentrs781912370L930L0.41
LGGchrX53399619SilentnovelK844K0.24
LGGchrX53413306Missense_MutationnovelD181N0.31
LGGchrX53405500Missense_MutationnovelR635L0.71
LIHCchrX53415062Missense_MutationnovelP73S0.39
LIHCchrX53394833Missense_Mutationrs781980688Y973C0.47
LIHCchrX533800823'UTRnovel0.38
LIHCchrX53382534Missense_MutationNAK1086M0.24
LUADchrX53405376Missense_MutationnovelG643R0.15
LUADchrX53405275Missense_MutationnovelE676D0.22
LUADchrX53396534SilentnovelS882S0.19
LUADchrX53412235SilentNAL291L0.35
LUADchrX53409144Missense_MutationNAR488H0.21
LUADchrX53413326Missense_MutationnovelE174A0.21
LUADchrX53382527SilentNAL1088L0.55
LUADchrX53405839Missense_MutationNAD555N0.18
LUADchrX53396331Missense_MutationnovelE920Q0.18
LUADchrX53382283Missense_MutationNAS1129L0.34
LUSCchrX53412083Missense_MutationNAS342L0.18
LUSCchrX53396261Missense_MutationnovelS943L0.06
LUSCchrX53396298Missense_MutationnovelQ931E0.56
LUSCchrX53409190Missense_MutationnovelI473F0.13
LUSCchrX53412155Missense_MutationNAS318F0.36
LUSCchrX53412905Missense_MutationnovelE283D0.15
LUSCchrX53394872Missense_MutationNAE960G0.75
LUSCchrX53405102Missense_MutationnovelQ702H0.67
OVchrX53412038Missense_MutationnovelE357G0.04
OVchrX533798893'UTRnovel0.44
OVchrX53381057Missense_MutationnovelD1156E0.06
OVchrX53409133Nonsense_MutationnovelQ492Gfs*40.05
OVchrX53405660Missense_MutationNAD582Y0.4
OVchrX53382593SilentnovelR1066R0.2
OVchrX53405102Missense_MutationNAQ702H0.26
OVchrX53383246Missense_MutationnovelQ994P0.43
OVchrX53383247Missense_MutationnovelQ994K0.41
OVchrX53413008Missense_MutationNAI249T0.27
OVchrX53412184SilentnovelK308K0.1
OVchrX53405139Missense_MutationnovelK690T0.12
OVchrX53405596Missense_MutationnovelP603H0.14
OVchrX53405389Splice_RegionnovelT638T0.13
OVchrX53382240SilentNAA1143A0.41
OVchrX53422503Missense_MutationnovelP33H0.22
OVchrX53409072Missense_MutationNAP512H0.15
OVchrX53405856Missense_MutationnovelS549L0.05
OVchrX53396496Missense_MutationNAR895H0.38
PAADchrX53412931Missense_Mutationrs781812690R275W0.25
PRADchrX53409082Missense_MutationnovelR509G0.15
READchrX53411853Missense_MutationNAT388A0.62
READchrX53405519Missense_MutationnovelA629T0.12
READchrX53405858SilentnovelD548D0.29
READchrX53409458Missense_MutationNAR434W0.24
READchrX53399626Missense_MutationnovelV842A0.06
SKCMchrX533800063'UTRnovel1
SKCMchrX53409263SilentNAS448S1
SKCMchrX53396229Frame_Shift_DelnovelE953Rfs*100.17
SKCMchrX533800133'UTRnovel0.4
SKCMchrX53413068Missense_MutationNAY229S0.5
SKCMchrX53411870Missense_MutationNAA382G0.83
SKCMchrX53394795SilentNAL986L0.2
SKCMchrX53409146SilentNAA487A0.81
SKCMchrX53405372Missense_MutationnovelT644I0.4
SKCMchrX53411822Missense_Mutationrs587784403R398Q0.78
STADchrX53409481Missense_MutationNAR426Q0.27
STADchrX53394775Splice_Regionnovel0.35
STADchrX53405526SilentnovelR626R0.18
STADchrX53409121Missense_MutationNAR496C0.27
STADchrX53413388SilentNAA153A0.64
STADchrX53413104Missense_MutationNAV217E0.1
STADchrX53411804Missense_MutationNAQ404R0.19
STADchrX53405655SilentnovelE583E0.55
STADchrX53405953Missense_MutationNAG517S0.73
STADchrX53383172Missense_MutationNAR1019C0.64
STADchrX53409177Missense_MutationnovelL477P0.07
STADchrX53399634SilentNAE839E0.1
STADchrX53411838SilentnovelL393L0.72
THCAchrX53412055Frame_Shift_DelnovelE352Nfs*140.06
THCAchrX53405895Missense_MutationnovelK536R0.12
UCECchrX53403567Missense_MutationnovelR807C0.22
UCECchrX53382250Missense_MutationnovelL1140P0.21
UCECchrX53412051Missense_Mutationrs781862992R353W0.46
UCECchrX53399613SilentNAE846E0.31
UCECchrX53396479Missense_MutationNAA901T0.48
UCECchrX53403626Missense_Mutationrs782402477R787H0.35
UCECchrX53409457Missense_MutationNAR434Q0.07
UCECchrX53415094Missense_MutationnovelR62Q0.09
UCECchrX53382328Missense_MutationNAN1114S0.32
UCECchrX53396497Missense_MutationnovelR895C0.04
UCECchrX53380646Missense_Mutationrs782175064E1198K0.32
UCECchrX533774773'UTRnovel0.44
UCECchrX53405500Missense_MutationNAR635H0.57
UCECchrX53383126Missense_MutationnovelV1034A0.29
UCECchrX53399665Missense_MutationnovelK829R0.11
UCECchrX53405321Missense_MutationnovelA661V0.63
UCECchrX53405054Missense_MutationnovelD718E0.23
UCECchrX53380681Missense_Mutationrs587784419V1186A0.29
UCECchrX533748823'UTRnovel0.16
UCECchrX533800803'UTRnovel0.37
UCECchrX53405076Missense_Mutationrs782176647R711Q0.52
UCECchrX53409068SilentnovelG513G0.34
UCECchrX53409445Missense_MutationnovelL438P0.34
UCECchrX53415063SilentnovelK72K0.41
UCECchrX53403800Missense_MutationnovelD764Y0.16
UCECchrX53409210Missense_MutationnovelA466V0.23
UCECchrX53382595Missense_Mutationrs797044896R1066C0.41
UCECchrX53405865Missense_MutationnovelI546S0.51
UCECchrX53412110Missense_MutationnovelM333T0.49
UCECchrX53421975Intronnovel0.47
UCECchrX53380705Missense_MutationnovelS1178W0.18
UCECchrX53412959SilentnovelE265E0.03
UCECchrX53380640Missense_MutationNAL1200I0.31
UCECchrX53403792Missense_MutationnovelK766N0.04
UCECchrX53382370Missense_MutationNAP1100H0.25
UCECchrX53413424Frame_Shift_InsnovelE141Dfs*160.05
UCECchrX53413425Nonsense_MutationnovelE141Vfs*40.05
UCECchrX53414848SilentnovelI107I0.36
UCECchrX533778553'UTRnovel0.18
UCECchrX53412069Missense_MutationnovelR347W0.29
UCECchrX53413269Missense_MutationNAA193V0.46
UCECchrX53382646Nonsense_MutationnovelR1049*0.47
UCECchrX53414831Missense_MutationnovelQ113R0.11
UCECchrX533748733'UTRnovel0.47
UCECchrX53394802SilentnovelY983Y0.4
UCECchrX53413007SilentNAI249I0.05
UCECchrX533780153'UTRnovel0.34
UCECchrX53413280Missense_MutationnovelK189N0.18
UCECchrX53403794Missense_MutationnovelK766E0.13
UCECchrX53405131Missense_MutationnovelR693W0.3
UCECchrX53405810SilentnovelR564R0.39
UCECchrX53412172SilentnovelL312L0.33
UCECchrX533747113'UTRnovel0.19
UCECchrX53405265Missense_MutationnovelR680C0.43
UCECchrX53405659Missense_MutationnovelD582G0.17
UCECchrX53409081Missense_MutationNAR509H0.44
UCECchrX53405113Missense_MutationNAR699C0.36
UCECchrX533760153'UTRnovel0.25
UCECchrX53413007SilentNAI249I0.41
UCECchrX53381066SilentnovelF1153F0.17
UCECchrX53415055Missense_MutationnovelA75V0.34
UCECchrX53380641SilentnovelS1199S0.41
UCECchrX53403608Missense_MutationnovelE793G0.08
UCECchrX53409081Missense_MutationNAR509H0.31
UCECchrX533746603'UTRrs3753487500.34
UCECchrX533748823'UTRnovel0.4
UCECchrX53382582Missense_MutationnovelF1070S0.54
UCECchrX53405821Nonsense_MutationnovelK561*0.4
UCECchrX534226505'UTRnovel0.17
UCECchrX533800843'UTRrs7822334280.37
UCECchrX53381066SilentnovelF1153F0.08
UCECchrX53405500Missense_MutationNAR635H0.5
UCECchrX53412001Missense_MutationNAE369D0.34
UCECchrX53412225Missense_MutationnovelR295W0.04
UCECchrX53413285Missense_MutationNAR188C0.48
UCECchrX53405027SilentnovelL727L0.36
UCECchrX53399703SilentnovelR816R0.34
UCECchrX53414992Missense_Mutationrs781817340R96H0.51
UCECchrX533780223'UTRnovel0.34
UCECchrX53383112Nonsense_MutationnovelQ1039*0.47
UCECchrX53403850Missense_MutationNAR747H0.27
UCECchrX53404905Intronnovel0.09
UCECchrX53409458Missense_MutationNAR434W0.43
UCECchrX53405648Missense_MutationNAR586W0.45
UCECchrX53382308Missense_MutationnovelR1121C0.34
UCECchrX533747753'UTRnovel0.31
UCECchrX53403642Missense_MutationnovelR782W0.26
UCECchrX53382586Missense_MutationnovelR1069C0.43
UCECchrX53405597Missense_MutationnovelP603S0.34
UCECchrX53405263SilentnovelR680R0.56
UCECchrX53413241Missense_MutationnovelE202D0.43
UCECchrX53413314Missense_MutationNAA178V0.55
UCECchrX53405494Missense_MutationNAK637R0.44
UCECchrX53396497Missense_MutationnovelR895C0.16
UCECchrX53405077Missense_Mutationrs587784409R711W0.5
UCECchrX53380682Missense_MutationNAV1186I0.39
UCECchrX53403618Missense_Mutationrs587784412R790W0.41
UCECchrX53403661Missense_MutationnovelE775D0.09
UCECchrX53412959Missense_MutationnovelE265D0.08
UCECchrX53413002Missense_MutationnovelK251R0.39
UCECchrX53422500Missense_MutationNAN34S0.51
UCECchrX53415110Missense_MutationNAR57W0.23
UCECchrX53413295Missense_MutationNAF184L0.28
UCECchrX53405076Missense_Mutationrs782176647R711Q0.28
UCECchrX53382344Missense_MutationnovelD1109N0.37
UCECchrX53405816Missense_MutationnovelE562D0.51
UCECchrX53414868Missense_MutationnovelG101C0.32
UCECchrX53394795Missense_MutationnovelL986M0.22
UCECchrX53404813Intronnovel0.25
UCECchrX53405954Splice_Regionrs782547781Y516Y0.11
UCECchrX53422015IntronNA0.29
UCECchrX533773163'UTRnovel0.45
UCECchrX53381066SilentnovelF1153F0.43
UCECchrX53394880SilentnovelS957S0.43
UCECchrX53403597Missense_MutationnovelV797L0.28
UCECchrX53404898Intronnovel0.43
UCECchrX53405524Missense_Mutationrs781857094R627H0.29
UCECchrX533748833'UTRnovel0.27
UCECchrX533761323'UTRnovel0.65
UCSchrX53405357Missense_MutationnovelS649L1
UCSchrX53405077Missense_Mutationrs587784409R711W0.84
UVMchrX53383144Missense_MutationnovelM1028T0.43

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
ACCAMP0.44440.089286
SARCAMP0.3230.19108
THCADEL0.0020.21991

Survival Analysis
CancerP-value Q-value
THYM0.016

Kaplan-Meier Survival Analysis

KIRC0.0011

Kaplan-Meier Survival Analysis

STAD0.0023

Kaplan-Meier Survival Analysis

SARC0.0034

Kaplan-Meier Survival Analysis

MESO0.00029

Kaplan-Meier Survival Analysis

READ0.042

Kaplan-Meier Survival Analysis

KICH0.013

Kaplan-Meier Survival Analysis

LIHC0.0012

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000072501 (Gene tree)
Gene ID
8243
Gene Symbol
SMC1A
Alias
DXS423E|KIAA0178|SB1.8|Smcb|SMC1L1
Full Name
structural maintenance of chromosomes 1A
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
48,580 bases
Position
chrX:53,374,149-53,422,728
Accession
11111
RBP type
non-canonical RBP
Summary
Proper cohesion of sister chromatids is a prerequisite for the correct segregation of chromosomes during cell division. The cohesin multiprotein complex is required for sister chromatid cohesion. This complex is composed partly of two structural maintenance of chromosomes (SMC) proteins, SMC3 and either SMC1B or the protein encoded by this gene. Most of the cohesin complexes dissociate from the chromosomes before mitosis, although those complexes at the kinetochore remain. Therefore, the encoded protein is thought to be an important part of functional kinetochores. In addition, this protein interacts with BRCA1 and is phosphorylated by ATM, indicating a potential role for this protein in DNA repair. This gene, which belongs to the SMC gene family, is located in an area of the X-chromosome that escapes X inactivation. Mutations in this gene result in Cornelia de Lange syndrome. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000469129SMC1A-205847--- (aa)--
ENST00000375340SMC1A-2029930-ENSP000003644891211 (aa)-G8JLG1
ENST00000428014SMC1A-203868-ENSP00000413509262 (aa)-H0Y7K8
ENST00000470241SMC1A-206838-ENSP00000476416279 (aa)-V9GY57
ENST00000322213SMC1A-2019784-ENSP000003234211233 (aa)-Q14683
ENST00000463684SMC1A-204880-ENSP0000047695854 (aa)-V9GYN9
Gene Model
Click here to download ENSG00000072501's gene model file
Pathways
Pathway IDPathway NameSource
hsa04110Cell cycleKEGG
hsa04114Oocyte meiosisKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000072501's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000072501SMC1A10099.838ENSMUSG00000041133Smc1a10099.838Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000070mitotic sister chromatid segregation7757074.TASProcess
GO:0000775chromosome, centromeric region-TASComponent
GO:0000776kinetochore11682612.12199140.IDAComponent
GO:0000777condensed chromosome kinetochore-IEAComponent
GO:0000794condensed nuclear chromosome7757074.TASComponent
GO:0003682chromatin binding11076961.IDAFunction
GO:0003723RNA binding22681889.HDAFunction
GO:0005515protein binding11076961.11590136.11877377.12930902.15837422.16438930.17112726.17113138.17349791.18832153.19629043.20818333.22628566.22885700.22977523.23242214.24136289.26496610.30021884.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus11076961.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005694chromosome-TASComponent
GO:0005829cytosol-IDAComponent
GO:0005829cytosol-TASComponent
GO:0006281DNA repair11877377.TASProcess
GO:0007062sister chromatid cohesion15917200.IMPProcess
GO:0007064mitotic sister chromatid cohesion12199140.TASProcess
GO:0008278cohesin complex11590136.22628566.IDAComponent
GO:0008278cohesin complex11076961.TASComponent
GO:0009314response to radiation11877377.IEPProcess
GO:0016363nuclear matrix11590136.IDAComponent
GO:0019827stem cell population maintenance-IEAProcess
GO:0030893meiotic cohesin complex21242291.IDAComponent
GO:0032876negative regulation of DNA endoreduplication15917200.IMPProcess
GO:0036033mediator complex binding-IEAFunction
GO:0046982protein heterodimerization activity11590136.IPIFunction
GO:0051301cell division-IEAProcess
GO:0051321meiotic cell cycle-ISSProcess
GO:0072423response to DNA damage checkpoint signaling11877377.IDAProcess
GO:0097431mitotic spindle pole11590136.IDAComponent
GO:1901673regulation of mitotic spindle assembly11590136.IMPProcess
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