EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
24469107RNA helicase A is a downstream mediator of KIF1Bβ tumor-suppressor function in neuroblastoma.Cancer Discov2014 AprChen ZXdoi: 10.1158/2159-8290.CD-13-0362
25518808The tumour suppressor DLC2 ensures mitotic fidelity by coordinating spindle positioning and cell-cell adhesion.Nat Commun2014 Dec 18Vitiello Edoi: 10.1038/ncomms6826.
18614535KIF1Bbeta functions as a haploinsufficient tumor suppressor gene mapped to chromosome 1p36.2 by inducing apoptotic cell death.J Biol Chem2008 Sep 5Munirajan AKdoi: 10.1074/jbc.M802316200
12888911Genomic structure and mutational analysis of the human KIF1Balpha gene located at 1p36.2 in neuroblastoma.Int J Oncol2003 SepChen YY-
25854172Polymorphisms in the kinesin-like factor 1 B gene and risk of epithelial ovarian cancer in Eastern Chinese women.Tumour Biol2015 SepShi TYdoi: 10.1007/s13277-015-3394-2

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr110304566Intronnovel0.48
BLCAchr110295127SilentnovelS544S0.51
BLCAchr110304517Intronnovel0.29
BLCAchr1103766493'UTRnovel0.36
BLCAchr110296998Missense_MutationnovelE655K0.13
BLCAchr110304607Intronnovel0.39
BLCAchr110326281Missense_Mutationrs141942131T949M0.33
BLCAchr110304038Intronnovel0.62
BLCAchr110360966SilentnovelL1365L0.1
BLCAchr110371228SilentnovelL1638L0.12
BLCAchr110321706Splice_Regionnovel0.28
BLCAchr110258522Missense_Mutationrs765503412N71K0.1
BLCAchr110304240Intronnovel0.11
BLCAchr110304038Intronnovel0.51
BLCAchr110304607Intronnovel0.38
BLCAchr110275449Missense_MutationnovelD302H0.31
BLCAchr110374422Missense_Mutationrs764494187E1685K0.45
BLCAchr110321848SilentnovelL783L0.2
BLCAchr110295156Missense_MutationnovelG554E0.12
BLCAchr1103766743'UTRnovel0.45
BLCAchr110337402Missense_MutationnovelK1097N0.16
BLCAchr110365439Missense_Mutationrs774445070R1515C0.27
BLCAchr110324881Missense_MutationnovelF887L0.24
BLCAchr110232413Nonsense_MutationNAQ29*0.23
BLCAchr110303586Intronnovel0.26
BLCAchr110321706Splice_Regionnovel0.24
BLCAchr110320049Nonsense_MutationnovelE708*0.29
BLCAchr110304650Intronnovel0.38
BLCAchr110304144Intronnovel0.38
BLCAchr110304468Intronrs7577029900.1
BLCAchr110282533Splice_RegionNAK478K0.32
BLCAchr110296968Missense_MutationnovelE645Q0.18
BLCAchr110275427Splice_SiteNAX295_splice0.14
BLCAchr110303540Intronnovel0.22
BLCAchr110258517Missense_MutationnovelQ70E0.08
BLCAchr110268258Missense_MutationnovelE239K0.31
BLCAchr110336667Missense_MutationnovelE1018D0.24
BLCAchr110303702Intronnovel0.07
BRCAchr110303741Intronnovel0.36
BRCAchr110304009Intronrs5425467340.38
BRCAchr110258495Splice_RegionnovelP62P0.22
BRCAchr110352730Missense_MutationNAS1350C0.48
BRCAchr110295696SilentNAI569I0.2
BRCAchr110272258SilentNAN272N0.16
BRCAchr110304321Intronnovel0.04
BRCAchr110337179Missense_MutationnovelE1079Q0.1
BRCAchr110337122Missense_MutationNAE1060K0.82
BRCAchr110324891Missense_MutationnovelG891R0.05
BRCAchr110303756IntronNA0.17
BRCAchr110295083Splice_Regionnovel0.78
BRCAchr110352639Missense_Mutationrs764473301R1320W0.57
BRCAchr110360945Missense_MutationNAE1358Q0.31
BRCAchr1103782473'UTRnovel0.27
BRCAchr110303783IntronNA0.41
BRCAchr110365582Missense_MutationNAE1562D0.23
BRCAchr110296653Missense_MutationNAQ617E0.33
BRCAchr110278021Missense_MutationNAA358V0.11
BRCAchr110326196Missense_MutationNAT921A0.89
BRCAchr110352639Missense_Mutationrs764473301R1320W0.42
BRCAchr110352639Missense_Mutationrs764473301R1320W0.27
BRCAchr110258515Missense_MutationNAS69F0.24
BRCAchr110304051Intronrs3771683510.17
CESCchr110324789Missense_MutationNAD857H0.27
CESCchr110267394Missense_MutationNAE148D0.19
CESCchr110275427Splice_SitenovelX295_splice0.46
CESCchr1103790893'UTRnovel0.4
CESCchr110365151Missense_MutationNAR1473Q0.62
CESCchr110303361IntronNA0.44
CESCchr110365498SilentNAL1534L0.4
CESCchr110365599Missense_MutationNAS1568L0.45
CESCchr110268240Missense_MutationNAE233K0.18
CESCchr110371164SilentnovelG1616G0.35
CESCchr110339807Missense_MutationNAP1154L0.37
CESCchr110326175Missense_MutationnovelS914P0.07
CESCchr110303765Intronrs7555786320.32
CESCchr1103812643'UTRnovel0.4
CESCchr110279118Missense_MutationnovelY401F0.24
CESCchr110361022Missense_MutationNAM1383I0.14
CESCchr110324895Missense_MutationNAS892I0.37
CESCchr110267414Missense_Mutationrs752393884R155Q0.31
CHOLchr110374934Missense_Mutationrs778439251R1726H0.5
COADchr110376569Silentrs768290105P1811P0.26
COADchr110261960Missense_MutationNAY140C0.28
COADchr110363292SilentNAV1438V0.34
COADchr110352649Missense_MutationNAP1323H0.17
COADchr110326126Silentrs566526002H897H0.07
COADchr110304051Intronrs3771683510.37
COADchr110303187Intronnovel0.17
COADchr110304278IntronNA0.37
COADchr110258629Missense_MutationnovelM107T0.34
COADchr1103784233'UTRnovel0.21
COADchr110296659Missense_Mutationrs752648536R619C0.25
COADchr110334587Missense_MutationnovelE998Q0.31
COADchr110375031SilentnovelQ1758Q0.17
COADchr110361776Missense_Mutationrs143800192R1419C0.2
COADchr110374349SilentNAP1660P0.29
COADchr110368523Silentrs749686737S1603S0.23
COADchr110304456IntronNA0.41
COADchr110297003SilentNAP656P0.13
COADchr110374407Nonsense_MutationnovelR1680*0.32
COADchr1103786133'UTRnovel0.26
COADchr110282476SilentNAS459S0.26
COADchr110326321Silentrs763515223P962P0.06
COADchr110296993Missense_MutationnovelP653R0.23
COADchr1103784383'UTRnovel0.29
COADchr110361031Silentrs116302604S1386S0.27
COADchr110279111Missense_MutationnovelD399N0.16
COADchr110371165Missense_Mutationrs765259892R1617W0.15
COADchr110297028Missense_MutationNAE665K0.37
COADchr110337438SilentNAN1109N0.43
COADchr110282333Missense_MutationnovelF412V0.18
COADchr110297072Missense_MutationNAE679D0.22
COADchr110324847Missense_MutationNAG876D0.26
COADchr110258615SilentNAG102G0.35
COADchr110296903Missense_MutationNAR623H0.33
COADchr110303874IntronNA0.25
COADchr1103780023'UTRnovel0.5
COADchr110375033Missense_MutationnovelQ1759R0.06
COADchr110304819Intronnovel0.19
COADchr110278037Frame_Shift_DelnovelN365Mfs*80.32
COADchr110278052SilentNAL368L0.18
COADchr110368524Missense_Mutationrs769092155V1604I0.21
COADchr110324868Missense_MutationNAR883Q0.29
COADchr110376577Missense_Mutationrs761319935S1814L0.33
COADchr110304165Intronrs7588443840.22
COADchr110363305Missense_MutationNAE1443K0.2
COADchr110267454SilentNAV168V0.33
COADchr110304456IntronNA0.31
COADchr110323990Missense_Mutationrs766572494R822H0.29
COADchr110258635Missense_MutationNAG109V0.41
ESCAchr110304433Intronnovel0.39
ESCAchr110374342Missense_MutationnovelS1658C0.33
ESCAchr110337465SilentnovelT1118T0.18
ESCAchr1103791353'UTRnovel0.68
GBMchr110326293Nonsense_MutationnovelS953*0.04
GBMchr110365440Missense_Mutationrs375130478R1515H0.45
GBMchr110374355SilentnovelP1662P0.13
GBMchr110326297Missense_MutationnovelD954E0.08
GBMchr110324054Missense_MutationnovelE843D0.2
GBMchr110361010Missense_MutationnovelE1379D0.23
GBMchr110365482Missense_Mutationrs781051649S1529L0.22
GBMchr110374955Missense_MutationnovelY1733S0.45
GBMchr110276364Silentrs771891729A334A0.67
GBMchr110361713Missense_MutationnovelA1398S0.12
GBMchr110278091SilentnovelD381D0.06
GBMchr110324867Missense_MutationnovelR883W0.41
GBMchr110324759Nonsense_MutationnovelQ847*0.19
GBMchr110376551SilentnovelK1805K0.18
GBMchr110337521Missense_MutationnovelF1137S0.04
HNSCchr110304262Intronnovel0.05
HNSCchr110326310Missense_MutationnovelG959W0.25
HNSCchr110324778Missense_Mutationrs752039135R853Q0.28
HNSCchr110258568Missense_Mutationrs561371619E87Q0.3
HNSCchr110295106SilentnovelL537L0.28
HNSCchr110304119Intronnovel0.44
HNSCchr110304097Intronnovel0.21
HNSCchr110365538Missense_MutationnovelQ1548E0.23
HNSCchr110296601SilentnovelP599P0.49
HNSCchr110337498SilentnovelI1129I0.3
HNSCchr110334576Missense_MutationnovelA994V0.27
HNSCchr110365406Splice_Regionnovel0.21
HNSCchr110297226Missense_MutationnovelL699I0.11
HNSCchr110374430SilentnovelL1687L0.36
HNSCchr110268188SilentnovelS215S0.42
KICHchr110304589Intronnovel0.43
KIRCchr110374436SilentnovelL1689L0.25
KIRCchr110324007Missense_MutationNAE828K0.05
KIRCchr110303823IntronNA0.19
KIRCchr110361714Missense_MutationNAA1398V0.34
KIRCchr110304510IntronNA0.24
KIRCchr110334581Missense_Mutationrs145596547V996I0.33
KIRCchr110374464Missense_Mutationrs757564628S1699R0.35
KIRCchr110352660Missense_MutationNAE1327K0.35
KIRCchr110282385Missense_MutationnovelG429A0.26
KIRCchr110304486Intronnovel0.45
KIRCchr110365601Missense_MutationNAG1569R0.35
KIRPchr110278051Missense_MutationnovelL368Q0.47
KIRPchr110282435Missense_MutationNAC446S0.15
KIRPchr110278068Nonsense_MutationnovelE374*0.36
KIRPchr110360928Splice_SitenovelX1352_splice0.06
KIRPchr110304400Intronnovel0.28
KIRPchr110268252Missense_MutationNAS237P0.24
KIRPchr110232381Missense_MutationnovelR18L0.06
KIRPchr110334547SilentnovelL984L0.41
LAMLchr110275481SilentnovelT312T0.04
LGGchr110326300Silentrs771415270L955L0.8
LGGchr110326179Missense_Mutationrs749523745T915M0.07
LGGchr110304137Intronnovel0.06
LGGchr110376559Missense_Mutationrs770215708R1808H0.35
LIHCchr110321855Missense_MutationNAK786Q0.24
LIHCchr110256297Missense_MutationnovelD53N0.14
LIHCchr110324843Missense_MutationnovelT875P0.44
LIHCchr110352685Missense_MutationnovelS1335F0.7
LIHCchr110348684Missense_MutationnovelH1300Q0.32
LIHCchr110348664Missense_MutationNAI1294F0.31
LUADchr110334599Missense_MutationNAV1002M0.27
LUADchr110276397Splice_RegionnovelL345L0.1
LUADchr110304596Intronnovel0.19
LUADchr110275432Missense_MutationnovelK296I0.04
LUADchr110282326SilentNAL409L0.13
LUADchr110365498SilentNAL1534L0.3
LUADchr110267502SilentNAL184L0.48
LUADchr110304252Intronnovel0.19
LUADchr110321716Missense_MutationNAW739C0.08
LUADchr110232416Missense_MutationNAM30V0.47
LUADchr110282363Missense_MutationNAA422P0.06
LUADchr110267457SilentnovelR169R0.32
LUADchr110303937Intronnovel0.16
LUADchr110375307Missense_MutationnovelA1781V0.28
LUADchr110304031Intronnovel0.4
LUADchr110326109Splice_SitenovelX892_splice0.21
LUADchr110361782Missense_MutationNAL1421V0.06
LUADchr110304276Intronnovel0.26
LUADchr110295680Missense_MutationnovelE564V0.14
LUADchr110303817Intronnovel0.21
LUADchr110326262Missense_Mutationrs142567076A943T0.49
LUADchr110363283Splice_RegionNAS1435S0.25
LUADchr110375043SilentnovelV1762V0.62
LUADchr110323883Splice_SitenovelX787_splice0.19
LUADchr110323979Missense_MutationNAR818S0.29
LUADchr110337119Missense_MutationnovelE1059K0.2
LUADchr110295706Missense_MutationNAG573W0.18
LUADchr110371168Missense_MutationNAD1618Y0.44
LUADchr110278046SilentnovelA366A0.26
LUADchr110347827Splice_RegionNAQ1288Q0.22
LUADchr110304607Intronnovel0.21
LUADchr110295126Frame_Shift_InsnovelE545*0.07
LUADchr110376572Missense_MutationNAS1812R0.55
LUSCchr110278071Nonsense_MutationnovelE375*0.17
LUSCchr110337493Nonsense_MutationnovelG1128*0.19
LUSCchr110296666Splice_SitenovelX621_splice0.54
LUSCchr110303454Intronnovel0.07
LUSCchr110334581Missense_Mutationrs145596547V996I0.17
LUSCchr110374449Missense_MutationNAE1694Q0.05
LUSCchr110268165Missense_MutationNAT208A0.17
LUSCchr110296660Missense_Mutationrs202061430R619H0.3
LUSCchr110268244Missense_MutationNAT234N0.55
LUSCchr110374937Missense_MutationNAR1727L0.07
LUSCchr110232349SilentnovelK7K0.41
LUSCchr110303893Intronrs7549691120.13
LUSCchr110326189Silentrs774630480S918S0.18
LUSCchr110365559Missense_MutationNAE1555K0.07
LUSCchr110371238Missense_MutationNAS1641C0.05
LUSCchr110295102Missense_MutationnovelN536I0.22
LUSCchr110304565Intronrs7769763290.46
LUSCchr110365104Missense_MutationNAM1457I0.43
LUSCchr110282496Missense_MutationNAS466C0.26
LUSCchr110320089Missense_Mutationrs763303622R721Q0.23
LUSCchr110276350Missense_MutationNAA330S0.19
LUSCchr110365595Missense_MutationNAD1567N0.46
LUSCchr110304038Intronnovel0.29
LUSCchr110323985Silentrs751285467F820F0.44
LUSCchr110267446Missense_MutationnovelL166V0.33
LUSCchr110278113Nonsense_MutationnovelG389*0.36
LUSCchr110304228Intronnovel0.27
LUSCchr110343279Missense_MutationNAS1227Y0.82
LUSCchr110363287Nonsense_MutationnovelR1437*0.14
LUSCchr110345912SilentNAL1252L0.49
LUSCchr110276364SilentNAA334A0.44
LUSCchr110326253Missense_Mutationrs764144206V940M0.07
LUSCchr110365107SilentNAQ1458Q0.31
LUSCchr110303347Intronnovel0.44
LUSCchr110303300Intronnovel0.21
LUSCchr110268190Missense_MutationnovelR216H0.11
OVchr110323974Missense_MutationnovelD817N0.04
OVchr1103767473'UTRnovel0.16
OVchr110295693SilentnovelD568D0.36
OVchr110295165Missense_MutationnovelR557M0.34
OVchr110343251Nonsense_MutationNAR1218*0.39
OVchr110326307Missense_MutationnovelD958N0.09
OVchr110365247Splice_SiteNAX1504_splice0.3
OVchr110337149Nonsense_MutationnovelQ1069*0.04
OVchr110297061Missense_MutationNAQ676E0.21
OVchr110375024Nonsense_MutationnovelE1756delinsDHRI*GLGLSV0.04
PAADchr110365442Missense_MutationnovelE1516K0.18
PAADchr110326262Missense_Mutationrs142567076A943T0.2
PAADchr110352676Missense_MutationnovelA1332V0.18
PRADchr110304507Intronnovel0.53
PRADchr110304509Intronnovel0.56
PRADchr110232424SilentNAG32G0.15
PRADchr110320060SilentNAL711L0.21
PRADchr110303419IntronNA0.08
READchr110304209Intronnovel0.16
READchr110258659Missense_MutationNAG117D0.32
READchr110323990Missense_Mutationrs766572494R822H0.08
READchr110365609Silentrs750386624I1571I0.43
READchr110258535Missense_MutationnovelD76Y0.38
READchr110304164Intronrs7527579400.44
READchr1103783523'UTRnovel0.39
READchr110296903Missense_MutationNAR623H0.13
READchr110304362IntronNA0.38
SARCchr110323935Missense_MutationNAP804S0.26
SARCchr110363344Missense_MutationnovelG1456S0.18
SARCchr1103808203'UTRnovel0.31
SARCchr110343249Missense_MutationnovelR1217H0.18
SARCchr110258580Missense_MutationnovelV91F0.21
SARCchr1103767503'UTRnovel0.32
SKCMchr110272275Missense_MutationNAL278W0.05
SKCMchr110303940Intronnovel0.42
SKCMchr110375344SilentNAA1793A0.3
SKCMchr110296586Silentrs774839409I594I0.29
SKCMchr110275458Missense_MutationNAP305S0.34
SKCMchr110256267Missense_MutationNAP43S0.42
SKCMchr1103767493'UTRnovel0.33
SKCMchr110303501Intronnovel0.34
SKCMchr110365482Missense_Mutationrs781051649S1529L0.08
SKCMchr110321816SilentNAL773L0.32
SKCMchr110374380Missense_MutationnovelP1671S0.34
SKCMchr110326320Missense_Mutationrs762619916P962L0.89
SKCMchr110303967IntronNA0.78
SKCMchr110304320Intronnovel0.39
SKCMchr110343239Nonsense_MutationNAQ1214*0.28
SKCMchr110374440Missense_MutationnovelP1691S0.28
SKCMchr110337084Missense_Mutationrs267597898S1047L0.24
SKCMchr110323935Missense_MutationNAP804S0.52
SKCMchr110295724Missense_MutationnovelE579K0.32
SKCMchr110348702SilentnovelL1306L0.59
SKCMchr110334604SilentNAR1003R0.44
SKCMchr110304097Intronnovel0.15
SKCMchr110326264Silentrs745644299A943A0.57
SKCMchr110365634Missense_MutationNAE1580K0.23
SKCMchr110352721Missense_MutationNAS1347F0.24
SKCMchr110339811SilentNAL1155L0.23
SKCMchr110304038Intronnovel0.14
SKCMchr110297226Missense_MutationNAL699F0.98
SKCMchr110304208Intronnovel0.28
SKCMchr110304490Intronnovel0.65
SKCMchr110304240Intronnovel0.37
SKCMchr110232369Missense_MutationnovelP14L0.42
SKCMchr110326318SilentnovelD961D0.52
SKCMchr110256286Missense_MutationNAS49F0.19
SKCMchr110282424Missense_MutationNAS442F0.17
SKCMchr110343259SilentnovelF1220F0.08
SKCMchr110374333Missense_MutationNAS1655F0.21
SKCMchr110371223Missense_MutationNAP1636L0.33
SKCMchr110343259SilentnovelF1220F0.49
SKCMchr110292083SilentnovelR517R0.37
SKCMchr110303649Intronnovel0.38
SKCMchr110304400Intronnovel0.42
SKCMchr110363287Nonsense_MutationnovelR1437*0.38
SKCMchr110365609Silentrs750386624I1571I0.41
SKCMchr110275458Missense_MutationNAP305S0.74
STADchr110324830Silentrs775697231S870S0.29
STADchr110339801Missense_Mutationrs775773486T1152M0.33
STADchr110296978Missense_Mutationrs771169398P648H0.17
STADchr110326142Missense_MutationNAR903C0.18
STADchr110258499Missense_MutationNAD64N0.14
STADchr110296636Missense_MutationNAR611K0.12
STADchr110304012Intronnovel0.27
STADchr110303601Intronrs1444572960.31
STADchr110339792Missense_MutationNAA1149E0.3
STADchr110303570Intronrs3685032810.23
STADchr110363305Missense_MutationNAE1443K0.38
STADchr110261921Missense_MutationNAF127C0.43
STADchr110295683Missense_Mutationrs201531774R565Q0.45
STADchr110304051Intronrs3771683510.14
STADchr110339802Silentrs574168097T1152T0.14
STADchr110347812Frame_Shift_InsnovelL1285Ffs*170.1
STADchr110276367Silentrs777030180D335D0.15
STADchr110258492Splice_SitenovelX62_splice0.35
STADchr110295682Missense_Mutationrs758740011R565W0.38
STADchr110303600Intronrs7634483850.16
STADchr110276363Missense_MutationNAA334V0.28
STADchr110365111In_Frame_DelnovelR1462del0.17
STADchr110334554Missense_Mutationrs768340319V987M0.06
STADchr110321753Missense_Mutationrs368066001R752W0.29
STADchr110347812Frame_Shift_InsnovelL1285Ffs*170.13
STADchr110303874IntronNA0.07
STADchr110347776SilentnovelV1271V0.17
STADchr110326273Silentrs138353787D946D0.35
STADchr110303379Intronnovel0.24
STADchr110321809Silentrs749823391A770A0.22
STADchr110324822Missense_MutationNAD868Y0.22
STADchr110371165Missense_Mutationrs765259892R1617W0.62
TGCTchr110334603Missense_Mutationrs755104684R1003Q0.22
THCAchr110337095Missense_Mutationrs765659089M1051V0.31
THCAchr110303351Intronnovel0.05
THCAchr110365564Frame_Shift_InsnovelE1562Hfs*40.06
UCECchr110278000Missense_Mutationrs773162220A351V0.45
UCECchr110342070Missense_MutationNAE1178D0.26
UCECchr110365565Missense_Mutationrs200255510A1557T0.39
UCECchr110376578Silentrs188387287S1814S0.33
UCECchr110303168Intronrs3741265650.36
UCECchr110303874IntronNA0.28
UCECchr110304348IntronNA0.34
UCECchr110374879Missense_MutationNAL1708I0.1
UCECchr1103766293'UTRnovel0.29
UCECchr110256276Missense_MutationnovelA46S0.13
UCECchr110277996Missense_MutationNAR350C0.38
UCECchr110295151Missense_MutationnovelK552N0.18
UCECchr110320088Nonsense_MutationnovelR721*0.23
UCECchr110348697Missense_Mutationrs762078299E1305K0.22
UCECchr110360989SilentnovelN1372N0.4
UCECchr110337189Missense_Mutationrs745363423R1082Q0.34
UCECchr110365482Missense_Mutationrs781051649S1529L0.34
UCECchr110374969Missense_MutationnovelD1738Y0.08
UCECchr110320088Nonsense_MutationnovelR721*0.25
UCECchr110326295Missense_MutationnovelD954Y0.33
UCECchr110368468Missense_MutationnovelC1585Y0.42
UCECchr1103771383'UTRnovel0.24
UCECchr110267394SilentnovelE148E0.06
UCECchr110361825Missense_Mutationrs776370957S1435L0.44
UCECchr110375288Missense_Mutationrs769837316R1775C0.44
UCECchr110365184Missense_MutationNAR1484L0.45
UCECchr110282517Missense_MutationnovelA473V0.41
UCECchr110297013Missense_MutationnovelT660P0.44
UCECchr110374345Missense_MutationnovelS1659I0.08
UCECchr110295152Missense_MutationnovelD553Y0.46
UCECchr110374933Missense_Mutationrs754479325R1726C0.38
UCECchr110324822Missense_MutationNAD868Y0.14
UCECchr110304559IntronNA0.27
UCECchr110304134Intronnovel0.03
UCECchr110296993Missense_MutationnovelP653H0.28
UCECchr110348696Silentrs775203595S1304S0.22
UCECchr110374452Nonsense_MutationNAE1695*0.12
UCECchr110279111Missense_MutationnovelD399N0.17
UCECchr110296921Missense_MutationnovelN629S0.3
UCECchr110275466SilentnovelR307R0.05
UCECchr110297011Missense_MutationNAW659L0.32
UCECchr110345893Missense_MutationNAS1246N0.48
UCECchr1103771383'UTRnovel0.72
UCECchr110292114Missense_MutationnovelP528T0.16
UCECchr1103807063'UTRnovel0.43
UCECchr1103772763'UTRnovel0.37
UCECchr110291131Missense_MutationnovelL495P0.4
UCECchr110337189Missense_Mutationrs745363423R1082Q0.14
UCECchr1103773793'UTRnovel0.5
UCECchr110339774Missense_MutationnovelL1143S0.16
UCECchr110361797Missense_MutationnovelG1426C0.15
UCECchr110375325Missense_MutationnovelM1787T0.34
UCECchr110267414Missense_Mutationrs752393884R155Q0.34
UCECchr110295686Missense_Mutationrs751881065R566H0.33
UCECchr110321787Missense_Mutationrs756162064R763Q0.44
UCECchr110324851Silentrs200060590S877S0.36
UCECchr1103765983'UTRrs7536832280.39
UCECchr1103799463'UTRnovel0.45
UCECchr1103810393'UTRnovel1
UCECchr110320089Missense_Mutationrs763303622R721Q0.32
UCECchr1103793343'UTRnovel0.24
UCECchr1103807063'UTRnovel0.73
UCECchr110277997Missense_Mutationrs565984994R350H0.37
UCECchr1103814583'UTRnovel0.25
UCECchr110304132Intronnovel0.25
UCECchr1103807203'UTRnovel0.29
UCECchr110275497Missense_MutationnovelN318H0.42
UCECchr110282352Missense_MutationnovelR418I0.43
UCECchr110304371Intronnovel0.43
UCECchr110304457Intronrs7733816450.4
UCECchr110348719Missense_Mutationrs766432835R1312H0.48
UCECchr110374421Silentrs763518005N1684N0.4
UCECchr1103784573'UTRnovel0.41
UCECchr1103791803'UTRrs5502395330.55
UCECchr110361777Missense_Mutationrs567728453R1419H0.11
UCECchr110365482Missense_Mutationrs781051649S1529L0.22
UCECchr110304026IntronNA0.29
UCECchr110256297Missense_MutationnovelD53N0.49
UCECchr110267499Missense_MutationnovelK183N0.43
UCECchr110297072Missense_MutationNAE679D0.42
UCECchr110303594Intronrs2008623380.4
UCECchr110303728Intronnovel0.56
UCECchr110320051SilentnovelE708E0.54
UCECchr110323990Missense_Mutationrs766572494R822H0.46
UCECchr1103813753'UTRnovel0.44
UCECchr110361006Missense_MutationNAG1378V0.41
UCECchr110297053Missense_MutationNAD673G0.45
UCECchr1103785743'UTRnovel0.11
UCECchr110258536Missense_MutationNAD76G0.38
UCECchr1103766343'UTRnovel0.43
UCECchr110304334Intronnovel0.36
UCECchr110268164SilentnovelA207A0.25
UCECchr110292073Missense_MutationnovelV514A0.43
UCECchr110303629Intronnovel0.17
UCECchr1103771633'UTRnovel0.43
UCECchr1103784903'UTRnovel0.26
UCECchr1103807063'UTRnovel0.58
UCECchr110256296Silentrs764651787F52F0.12
UCECchr110268237Missense_MutationnovelN232D0.35
UCECchr110297060Missense_MutationnovelK675N0.55
UCECchr110363305Missense_MutationNAE1443K0.21
UCECchr110371159Missense_Mutationrs372421679I1615V0.19
UCECchr110371256Missense_MutationnovelD1647G0.39
UCECchr1103766613'UTRnovel0.27
UCECchr1103772143'UTRnovel0.11
UCECchr110365565Missense_Mutationrs200255510A1557T0.36
UCECchr110374922Missense_MutationnovelF1722S0.4
UCECchr1103799883'UTRnovel0.38
UCECchr1103802803'UTRrs5560133660.35
UCECchr1103812003'UTRnovel0.5
UCECchr110303937Intronnovel0.57
UCECchr1103807063'UTRnovel0.47
UCECchr110323989Missense_Mutationrs760896802R822C0.35
UCECchr110365161Missense_MutationnovelE1476D0.44
UCECchr110275449Missense_MutationnovelD302Y0.35
UCECchr110296608Missense_Mutationrs767848662R602C0.29
UCECchr110268190Missense_MutationnovelR216H0.19
UCECchr110374336Missense_Mutationrs373439616R1656Q0.36
UCECchr110272260Missense_MutationnovelK273T0.33
UCECchr110304457Intronrs7733816450.4
UCECchr110375284SilentnovelK1773K0.53
UCECchr110304490Intronnovel0.56
UCECchr110326310Missense_Mutationrs764910038G959R0.36
UCECchr110277996Missense_MutationNAR350C0.14
UCECchr110296586Silentrs774839409I594I0.14
UCECchr110304426Intronnovel0.12
UCECchr110334581Missense_Mutationrs145596547V996I0.29
UCECchr1103813673'UTRnovel0.08
UCECchr110303599Intronnovel0.18
UCECchr110375372Missense_Mutationrs759957126R1803W0.39
UCECchr1103783603'UTRnovel0.1
UCECchr1103807063'UTRnovel0.35
UCECchr110258586Frame_Shift_InsnovelA95Cfs*160.24
UCECchr110375289Missense_Mutationrs374303355R1775H0.26
UCECchr110256263Missense_MutationNAK41N0.51
UCECchr110348659Missense_MutationNAR1292Q0.05
UCECchr110360961Missense_MutationnovelS1363N0.05
UCECchr110303967IntronNA0.23
UCECchr110320125Missense_MutationNAE733A0.28
UCECchr110275436Missense_MutationNAK297N0.27
UCECchr110303241Intronnovel0.36
UCECchr1103772983'UTRnovel0.28
UCECchr110297189SilentnovelE686E0.09
UCECchr110267392Nonsense_MutationnovelE148*0.2
UCECchr110303306Intronnovel0.24
UCECchr110336707Missense_MutationnovelA1032S0.19
UCECchr110337415Missense_MutationnovelG1102W0.24
UCECchr110365107Missense_MutationnovelQ1458H0.19
UCECchr110374981Missense_Mutationrs200161482R1742C0.3
UCECchr1103766513'UTRnovel0.54
UCECchr110303967IntronNA0.32
UCECchr110326321Silentrs763515223P962P0.41
UCECchr110363292SilentnovelV1438V0.52
UCECchr110268208Missense_MutationnovelT222M0.14
UCECchr110303437Intronnovel0.06
UCECchr110324852Missense_MutationNAD878N0.3
UCECchr110345917Missense_MutationNAV1254A0.38
UCECchr110303186Intronrs1168597450.38
UCECchr110256296Silentrs764651787F52F0.42
UCECchr110303883Intronnovel0.41
UCECchr110375354Missense_MutationnovelL1797F0.33
UCECchr1103814583'UTRnovel0.48
UCECchr110347797SilentnovelL1278L0.4
UCECchr110375025Missense_MutationnovelE1756D0.35
UCECchr1103766613'UTRnovel0.25
UCECchr1103792843'UTRrs7563596950.55
UCECchr1103807553'UTRnovel0.28
UCSchr110304474Intronrs1468079750.41
UCSchr110258538Missense_MutationnovelI77L0.06

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CESCDEL0.10510.00029523
CHOLDEL0.80563.3987e-23
DLBCDEL0.10420.011841
HNSCDEL0.13987.0766e-07
KIRCDEL0.14392.3538e-09
KIRPDEL0.17361.462e-09
LUADDEL0.14150.0024765
LUSCDEL0.35732.5882e-07
MESODEL0.34482.434e-07
READDEL0.39392.1758e-10
TGCTDEL0.180.00046313
UCSDEL0.30360.0051125

Survival Analysis
CancerP-value Q-value
THYM0.024

Kaplan-Meier Survival Analysis

SARC0.0021

Kaplan-Meier Survival Analysis

ACC0.0013

Kaplan-Meier Survival Analysis

KIRP0.011

Kaplan-Meier Survival Analysis

COAD0.04

Kaplan-Meier Survival Analysis

PAAD0.026

Kaplan-Meier Survival Analysis

BLCA0.0023

Kaplan-Meier Survival Analysis

CESC0.044

Kaplan-Meier Survival Analysis

KICH0.027

Kaplan-Meier Survival Analysis

UCEC0.018

Kaplan-Meier Survival Analysis

LIHC0.042

Kaplan-Meier Survival Analysis

LGG0.023

Kaplan-Meier Survival Analysis

LUAD0.016

Kaplan-Meier Survival Analysis

UVM0.032

Kaplan-Meier Survival Analysis

OV0.011

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000054523 (Gene tree)
Gene ID
23095
Gene Symbol
KIF1B
Alias
KIAA0591|KLP|HMSNII|CMT2A|CMT2
Full Name
kinesin family member 1B
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
170,898 bases
Position
chr1:10,210,706-10,381,603
Accession
16636
RBP type
non-canonical RBP
Summary
This gene encodes a motor protein that transports mitochondria and synaptic vesicle precursors. Mutations in this gene cause Charcot-Marie-Tooth disease, type 2A1. [provided by RefSeq, Jul 2008]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
23342162Pax6 interactions with chromatin and identification of its novel direct target genes in lens and forebrain.PLoS One2013Xie Qdoi: 10.1371/journal.pone.0054507
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000635499KIF1B-2132098-ENSP00000489057498 (aa)-A0A0U1RQL3
ENST00000465635KIF1B-206759--- (aa)--
ENST00000263934KIF1B-2016816-ENSP000002639341770 (aa)-O60333
ENST00000470616KIF1B-207519--- (aa)--
ENST00000483340KIF1B-208839--- (aa)--
ENST00000377086KIF1B-20410669-ENSP000003662901816 (aa)-O60333
ENST00000620295KIF1B-2118624-ENSP000004785001809 (aa)-Q4R9M9
ENST00000377093KIF1B-2057565-ENSP000003662971153 (aa)-O60333
ENST00000377081KIF1B-2028746-ENSP000003662841823 (aa)-O60333
ENST00000377083KIF1B-2035885-ENSP000003662871153 (aa)-O60333
ENST00000622724KIF1B-2128588-ENSP000004800631797 (aa)-A0A087WWA3
ENST00000495136KIF1B-209643--- (aa)--
ENST00000497835KIF1B-210452--- (aa)--
Gene Model
Click here to download ENSG00000054523's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000054523Body Mass Index5.25291450257361E-617903300
ENSG00000054523Insulin6.42191882421044E-617903298
ENSG00000054523Glucosephosphate Dehydrogenase2.781e-005-
ENSG00000054523Glucosephosphate Dehydrogenase1.4e-005-
ENSG00000054523Glucosephosphate Dehydrogenase1.016e-005-
ENSG00000054523Glucosephosphate Dehydrogenase6.866e-005-
ENSG00000054523Glucosephosphate Dehydrogenase3.522e-005-
ENSG00000054523Glucosephosphate Dehydrogenase2.781e-005-
ENSG00000054523Glucosephosphate Dehydrogenase1.15e-005-
ENSG00000054523Glucosephosphate Dehydrogenase3.873e-005-
ENSG00000054523Glucosephosphate Dehydrogenase3.873e-005-
ENSG00000054523Glucosephosphate Dehydrogenase1.4e-005-
ENSG00000054523Glucosephosphate Dehydrogenase2.781e-005-
ENSG00000054523Glucosephosphate Dehydrogenase1.4e-005-
ENSG00000054523Glucosephosphate Dehydrogenase1.15e-005-
ENSG00000054523Glucosephosphate Dehydrogenase1.4e-005-
ENSG00000054523Multiple Sclerosis3E-1018997785
ENSG00000054523Carcinoma, Hepatocellular2E-1820676096
ENSG00000054523Cerebrospinal Fluid4E-1028031287
ENSG00000054523Mean Platelet Volume3E-822139419
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000054523rs17401966110325413GHepatitis B virus-related hepatocellular carcinoma29246937[1.43-2.44]1.89EFO_0000182|EFO_0004197
ENSG00000054523rs11121529110211630GMean platelet volume27863252[0.067-0.089] unit increase0.07830624EFO_0004584
ENSG00000054523rs17034775110338950?Virologic severity in Herpes simplex virus type 2 infection29535370EFO_0009010
ENSG00000054523rs17034615110251819?Cerebrospinal fluid biomarker levels28031287EFO_0006794
ENSG00000054523rs17396340110226118AMean platelet volume22139419[0.0041-0.0119] ln(fl) increase0.008EFO_0004584
ENSG00000054523rs12137527110255239?Tonsillectomy28928442[0.038-0.085] unit decrease0.0617EFO_0007924
ENSG00000054523rs12141192110371074?Tonsillectomy28928442[0.035-0.082] unit increase0.0589EFO_0007924
ENSG00000054523rs112682076110297748CHematocrit27863252[0.065-0.132] unit decrease0.09869539EFO_0004348
ENSG00000054523rs17401966110325413AHepatocellular carcinoma20676096[1.49-1.82]1.64EFO_0000182
ENSG00000054523rs10492972110293054CMultiple sclerosis18997785[1.23-1.48]1.34EFO_0003885
ENSG00000054523rs17396340110226118AWaist circumference adjusted for BMI (adjusted for smoking behaviour)28443625[0.019-0.035] unit increase0.027EFO_0004318|EFO_0007789
ENSG00000054523rs17396340110226118AWaist circumference adjusted for BMI (joint analysis main effects and smoking interaction)28443625EFO_0004318|EFO_0007789
ENSG00000054523rs17396340110226118AWaist circumference adjusted for BMI in non-smokers28443625[0.024-0.04] unit increase0.032EFO_0007789
ENSG00000054523rs11121542110333862AHand grip strength29691431[0.0022-0.0038] unit decrease0.003EFO_0006941
ENSG00000054523rs151178549110252387?Heel bone mineral density30048462[0.0096-0.0186] unit increase0.0140716EFO_0009270
ENSG00000054523rs111368727110283239?Heel bone mineral density30048462[0.013-0.024] unit increase0.0182041EFO_0009270
ENSG00000054523rs112682076110297748?White blood cell count30595370EFO_0004308
ENSG00000054523rs4846204110248900?Red blood cell count30595370EFO_0004305
ENSG00000054523rs112682076110297748?Lung function (FEV1/FVC)30595370EFO_0004713
ENSG00000054523rs4846204110248900TBody fat distribution (leg fat ratio)30664634NR unit decrease (replication)0.02362EFO_0004341
ENSG00000054523rs4846204110248900TBody fat distribution (leg fat ratio)30664634NR unit decrease (replication)0.02134EFO_0004341
ENSG00000054523rs4846204110248900TBody fat distribution (trunk fat ratio)30664634NR unit increase (replication)0.02471EFO_0004341
ENSG00000054523rs4846204110248900TBody fat distribution (trunk fat ratio)30664634NR unit increase (replication)0.02672EFO_0004341
ENSG00000054523rs4846204110248900TBody fat distribution (trunk fat ratio)30664634NR unit increase (replication)0.02575EFO_0004341
ENSG00000054523rs4846204110248900TBody fat distribution (leg fat ratio)30664634NR unit decrease (replication)0.01935EFO_0004341
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000054523's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000054523KIF1B10097.062ENSMUSG00000063077Kif1b10097.062Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003777microtubule motor activity21873635.IBAFunction
GO:0003777microtubule motor activity-ISSFunction
GO:0005515protein binding16225668.20852589.25416956.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005739mitochondrion-IEAComponent
GO:0005871kinesin complex21873635.IBAComponent
GO:0005874microtubule21873635.IBAComponent
GO:0005875microtubule associated complex-ISSComponent
GO:0006915apoptotic process-IEAProcess
GO:0007018microtubule-based movement21873635.IBAProcess
GO:0007018microtubule-based movement-ISSProcess
GO:0007270neuron-neuron synaptic transmission-ISSProcess
GO:0007274neuromuscular synaptic transmission-ISSProcess
GO:0008017microtubule binding21873635.IBAFunction
GO:0008089anterograde axonal transport-ISSProcess
GO:0008574ATP-dependent microtubule motor activity, plus-end-directed21873635.IBAFunction
GO:0010628positive regulation of gene expression-IEAProcess
GO:0016192vesicle-mediated transport21873635.IBAProcess
GO:0016887ATPase activity21873635.IBAFunction
GO:0016887ATPase activity-ISSFunction
GO:0019894kinesin binding10341097.TASFunction
GO:0019900kinase binding-IEAFunction
GO:0030424axon21873635.IBAComponent
GO:0030425dendrite21873635.IBAComponent
GO:0030659cytoplasmic vesicle membrane-ISSComponent
GO:0030705cytoskeleton-dependent intracellular transport21873635.IBAProcess
GO:0030705cytoskeleton-dependent intracellular transport-ISSProcess
GO:0031410cytoplasmic vesicle21873635.IBAComponent
GO:0031410cytoplasmic vesicle-ISSComponent
GO:0032418lysosome localization-IEAProcess
GO:0043005neuron projection21873635.IBAComponent
GO:0043005neuron projection-ISSComponent
GO:0047497mitochondrion transport along microtubule-IEAProcess
GO:0097110scaffold protein binding-IEAFunction
GO:1904115axon cytoplasm-IEAComponent
GO:1904647response to rotenone-IEAProcess
GO:1990048anterograde neuronal dense core vesicle transport-IEAProcess
GO:1990049retrograde neuronal dense core vesicle transport-IEAProcess
GO:1990090cellular response to nerve growth factor stimulus-IEAProcess
GO:1990778protein localization to cell periphery-IEAProcess
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