EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr5175968150Missense_MutationnovelS20W0.13
CESCchr5175965148SilentNAN144N0.4
CESCchr5175968004Missense_Mutationrs750071730R69C0.35
CESCchr5175968164Missense_MutationNAQ15H0.14
CESCchr5175968004Missense_MutationnovelR69S0.37
COADchr5175960084Missense_Mutationrs777994083A314V0.07
COADchr5175964969Missense_MutationnovelG204D0.44eIF2A
COADchr5175960007Missense_MutationnovelG340R0.24
COADchr5175967214Nonsense_MutationnovelW107*0.28
COADchr5175967161Missense_MutationNAR125H0.21
COADchr5175967143Missense_MutationnovelT131I0.18
COADchr51759599603'UTRnovel0.19
DLBCchr51759682215'UTRnovel0.26
KIRCchr5175960068Frame_Shift_DelnovelK318Tfs*80.07
KIRCchr5175960033Missense_MutationNAG331D0.18
KIRPchr5175965126Missense_MutationnovelD152N0.29eIF2A
LGGchr5175964964Missense_MutationnovelI206V0.75eIF2A
LIHCchr5175968149SilentnovelS20S0.11
LUADchr5175967221Frame_Shift_DelnovelV102Lfs*60.41
LUADchr5175965106SilentnovelV158V0.18
LUSCchr5175964978Missense_MutationnovelN201S0.28eIF2A
LUSCchr5175961285Missense_MutationnovelR260L0.16
OVchr51759599233'UTRnovel0.56
PRADchr5175964975Missense_MutationNAG202D0.21eIF2A
PRADchr5175965136Nonsense_MutationnovelC148*0.06eIF2A
READchr51759598323'UTRnovel0.62
READchr5175960021Missense_MutationNAS335I0.38
READchr5175965021Missense_Mutationrs367977934E187K0.21eIF2A
READchr5175967261Nonsense_MutationnovelE92*0.14
SARCchr5175968124In_Frame_InsnovelS28_S29insVRV0.11
SARCchr5175968125Missense_MutationnovelS28R0.07
SARCchr51759599423'UTRrs7572982190.18
SARCchr5175960064SilentnovelL321L0.16
SKCMchr5175960023SilentNAD334D0.39
STADchr5175960090Missense_MutationnovelT312K0.18
STADchr5175961285Missense_MutationnovelR260Q0.25
STADchr5175961398SilentnovelA222A0.3
UCECchr5175965016SilentNAI188I0.2
UCECchr5175960082Missense_MutationnovelW315R0.23
UCECchr5175967116Missense_MutationnovelT140I0.33eIF2A
UCECchr5175968082Missense_MutationnovelR43W0.05
UCECchr5175961400Missense_MutationNAA222T0.41eIF2A
UCECchr5175967161Missense_MutationNAR125H0.11
UCECchr5175965067Missense_MutationNAK171N0.26eIF2A
UCECchr5175964975Missense_MutationNAG202D0.24eIF2A
UCECchr5175965059Missense_MutationnovelR174H0.36eIF2A
UCECchr5175967161Missense_MutationNAR125H0.11
UCECchr5175960050SilentNAA325A0.16
UCECchr5175961038Intronnovel0.42
UCECchr5175965021Missense_Mutationrs367977934E187K0.17eIF2A
UCECchr5175961034Intronnovel0.43

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
KIRCAMP0.59092.1944e-60
KIRPAMP0.11110.069756
KIRPDEL0.03820.11554
LGGDEL0.08771.86e-07
LUADAMP0.17440.24967
LUSCDEL0.60080.002071
MESODEL0.11490.20184
PRADAMP0.03050.16448
SKCMAMP0.11440.23703
THCADEL00.23456

Survival Analysis
CancerP-value Q-value
PRAD0.034

Kaplan-Meier Survival Analysis

KIRP0.0044

Kaplan-Meier Survival Analysis

PCPG0.044

Kaplan-Meier Survival Analysis

CESC0.031

Kaplan-Meier Survival Analysis

KICH0.031

Kaplan-Meier Survival Analysis

UCEC0.0064

Kaplan-Meier Survival Analysis

LIHC0.011

Kaplan-Meier Survival Analysis

LGG0.0055

Kaplan-Meier Survival Analysis

LUAD0.037

Kaplan-Meier Survival Analysis

UVM0.011

Kaplan-Meier Survival Analysis

OV0.035

Kaplan-Meier Survival Analysis

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000051596 (Gene tree)
Gene ID
84321
Gene Symbol
THOC3
Alias
TEX1|MGC5469
Full Name
THO complex 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Minus strand
Length
116,808 bases
Position
chr5:175,917,873-176,034,680
Accession
19072
RBP type
canonical RBP
Summary
This gene encodes a component of the nuclear THO transcription elongation complex, which is part of the larger transcription export (TREX) complex that couples messenger RNA processing and export. In humans, the transcription export complex is recruited to the 5'-end of messenger RNAs in a splicing- and cap-dependent manner. Studies of a related complex in mouse suggest that the metazoan transcription export complex is involved in cell differentiation and development. A pseudogene of this gene has been defined on chromosome 5. [provided by RefSeq, May 2013]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000422243eIF2APF08662.112.7e-1211
ENSP00000265097eIF2APF08662.111.3e-0911
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000265097THOC3-2011589XM_017009985ENSP00000265097351 (aa)XP_016865474Q96J01
ENST00000513118THOC3-207490--- (aa)--
ENST00000514250THOC3-209649-ENSP0000042726713 (aa)-H0YAJ0
ENST00000510300THOC3-204699--- (aa)--
ENST00000513482THOC3-2081796-ENSP00000422243327 (aa)-Q96J01
ENST00000432305THOC3-202453-ENSP0000039416675 (aa)-H7C0C5
ENST00000628318THOC3-2121442-ENSP00000487428105 (aa)-D6RGZ2
ENST00000505969THOC3-203683-ENSP0000042496756 (aa)-H0Y9T1
ENST00000511062THOC3-205642-ENSP0000042702955 (aa)-H0YAG7
ENST00000515016THOC3-211250-ENSP0000042578157 (aa)-H0YA11
ENST00000514861THOC3-210628-ENSP00000425039166 (aa)-D6REC9
ENST00000513006THOC3-206602-ENSP00000421082105 (aa)-D6RGZ2
Gene Model
Click here to download ENSG00000051596's gene model file
Pathways
Pathway IDPathway NameSource
hsa03013RNA transportKEGG
hsa03040SpliceosomeKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000051596rs104761765175919787?Clostridium difficile infection in multiple myeloma29594489EFO_0009130|EFO_0001378
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000051596's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000051596THOC39192.812ENSAPOG00000010591thoc39992.812Acanthochromis_polyacanthus
ENSG00000051596THOC310098.860ENSAMEG00000006936THOC39998.860Ailuropoda_melanoleuca
ENSG00000051596THOC39192.500ENSACIG00000010364thoc39992.500Amphilophus_citrinellus
ENSG00000051596THOC39192.500ENSAOCG00000013548thoc39992.500Amphiprion_ocellaris
ENSG00000051596THOC39192.500ENSAPEG00000003216thoc39992.500Amphiprion_percula
ENSG00000051596THOC39192.500ENSATEG00000017937thoc39992.500Anabas_testudineus
ENSG00000051596THOC310099.145ENSANAG00000036291THOC310099.145Aotus_nancymaae
ENSG00000051596THOC39192.188ENSACLG00000017219thoc39992.188Astatotilapia_calliptera
ENSG00000051596THOC39888.047ENSAMXG00000010750thoc39992.500Astyanax_mexicanus
ENSG00000051596THOC310098.291ENSBTAG00000035174THOC310098.291Bos_taurus
ENSG00000051596THOC39895.627ENSCJAG00000046031THOC39195.627Callithrix_jacchus
ENSG00000051596THOC310099.145ENSCAFG00000014320THOC310099.145Canis_familiaris
ENSG00000051596THOC310099.145ENSCAFG00020011477THOC310099.145Canis_lupus_dingo
ENSG00000051596THOC310098.575ENSCHIG00000021665THOC310098.575Capra_hircus
ENSG00000051596THOC310072.934ENSTSYG00000009507-10072.934Carlito_syrichta
ENSG00000051596THOC384100.000ENSCPOG00000025805THOC39983.714Cavia_porcellus
ENSG00000051596THOC310099.430ENSCATG00000029038THOC310099.430Cercocebus_atys
ENSG00000051596THOC39999.143ENSCLAG00000015924THOC39999.143Chinchilla_lanigera
ENSG00000051596THOC310099.715ENSCSAG00000009454THOC310099.715Chlorocebus_sabaeus
ENSG00000051596THOC384100.000ENSCPBG00000022672THOC38198.485Chrysemys_picta_bellii
ENSG00000051596THOC38474.468ENSCSAVG00000011041-9966.246Ciona_savignyi
ENSG00000051596THOC310099.430ENSCANG00000008964THOC310099.430Colobus_angolensis_palliatus
ENSG00000051596THOC310096.866ENSCGRG00001022944Thoc39296.866Cricetulus_griseus_chok1gshd
ENSG00000051596THOC310096.866ENSCGRG00000012133Thoc310096.866Cricetulus_griseus_crigri
ENSG00000051596THOC39192.188ENSCVAG00000006941thoc39992.188Cyprinodon_variegatus
ENSG00000051596THOC39191.250ENSDARG00000056517thoc39991.250Danio_rerio
ENSG00000051596THOC310098.575ENSDNOG00000037214THOC310098.575Dasypus_novemcinctus
ENSG00000051596THOC38598.582ENSDORG00000014084Thoc38999.237Dipodomys_ordii
ENSG00000051596THOC38269.565FBgn0037569tex9663.548Drosophila_melanogaster
ENSG00000051596THOC310095.157ENSETEG00000020137THOC310095.157Echinops_telfairi
ENSG00000051596THOC39184.783ENSEBUG00000004516thoc39984.783Eptatretus_burgeri
ENSG00000051596THOC310098.860ENSEASG00005011970THOC310098.860Equus_asinus_asinus
ENSG00000051596THOC310098.575ENSECAG00000011555THOC310098.575Equus_caballus
ENSG00000051596THOC39191.562ENSELUG00000022058thoc39991.562Esox_lucius
ENSG00000051596THOC39195.938ENSFALG00000008536THOC310091.254Ficedula_albicollis
ENSG00000051596THOC39999.429ENSFDAG00000015062THOC39999.429Fukomys_damarensis
ENSG00000051596THOC39191.250ENSFHEG00000019958thoc39991.250Fundulus_heteroclitus
ENSG00000051596THOC39190.938ENSGMOG00000019136-9990.938Gadus_morhua
ENSG00000051596THOC39094.953ENSGALG00000024172THOC38394.953Gallus_gallus
ENSG00000051596THOC39191.250ENSGAFG00000016531thoc39791.250Gambusia_affinis
ENSG00000051596THOC39191.875ENSGACG00000016353thoc39991.875Gasterosteus_aculeatus
ENSG00000051596THOC39195.625ENSGAGG00000013237THOC39995.625Gopherus_agassizii
ENSG00000051596THOC310099.430ENSGGOG00000012127-10099.430Gorilla_gorilla
ENSG00000051596THOC39192.188ENSHBUG00000023812thoc39992.188Haplochromis_burtoni
ENSG00000051596THOC310098.860ENSHGLG00000008773THOC310098.860Heterocephalus_glaber_female
ENSG00000051596THOC310098.860ENSHGLG00100013354THOC310098.860Heterocephalus_glaber_male
ENSG00000051596THOC39189.062ENSHCOG00000003522thoc39989.062Hippocampus_comes
ENSG00000051596THOC39191.562ENSIPUG00000001292thoc39491.562Ictalurus_punctatus
ENSG00000051596THOC310096.581ENSJJAG00000010704Thoc310096.581Jaculus_jaculus
ENSG00000051596THOC39191.875ENSKMAG00000017815thoc39991.875Kryptolebias_marmoratus
ENSG00000051596THOC39191.250ENSLBEG00000006512thoc39991.250Labrus_bergylta
ENSG00000051596THOC39195.938ENSLACG00000014556THOC39995.938Latimeria_chalumnae
ENSG00000051596THOC39193.750ENSLOCG00000011610thoc39993.750Lepisosteus_oculatus
ENSG00000051596THOC310098.291ENSLAFG00000016609THOC310098.291Loxodonta_africana
ENSG00000051596THOC310099.715ENSMFAG00000034476THOC310099.715Macaca_fascicularis
ENSG00000051596THOC310099.715ENSMMUG00000018737THOC310099.715Macaca_mulatta
ENSG00000051596THOC310099.715ENSMNEG00000043023THOC310099.715Macaca_nemestrina
ENSG00000051596THOC310099.430ENSMLEG00000002508THOC310099.430Mandrillus_leucophaeus
ENSG00000051596THOC39192.767ENSMAMG00000013229thoc39992.767Mastacembelus_armatus
ENSG00000051596THOC39192.188ENSMZEG00005020327thoc39992.188Maylandia_zebra
ENSG00000051596THOC384100.000ENSMGAG00000004766THOC39998.859Meleagris_gallopavo
ENSG00000051596THOC310097.151ENSMAUG00000011225Thoc310097.151Mesocricetus_auratus
ENSG00000051596THOC310087.179ENSMICG00000031354-10087.179Microcebus_murinus
ENSG00000051596THOC310098.575ENSMICG00000028441-10098.575Microcebus_murinus
ENSG00000051596THOC310096.296ENSMOCG00000015290Thoc310096.296Microtus_ochrogaster
ENSG00000051596THOC39192.500ENSMMOG00000000373thoc39992.500Mola_mola
ENSG00000051596THOC39596.396ENSMODG00000005339THOC310093.732Monodelphis_domestica
ENSG00000051596THOC39475.831ENSMODG00000025275-10075.831Monodelphis_domestica
ENSG00000051596THOC39191.875ENSMALG00000002645thoc39991.875Monopterus_albus
ENSG00000051596THOC310098.860MGP_CAROLIEiJ_G0018534Thoc310098.860Mus_caroli
ENSG00000051596THOC310098.860ENSMUSG00000025872Thoc310098.860Mus_musculus
ENSG00000051596THOC310098.291MGP_PahariEiJ_G0019599Thoc310098.291Mus_pahari
ENSG00000051596THOC310098.860MGP_SPRETEiJ_G0019414Thoc310098.860Mus_spretus
ENSG00000051596THOC39198.658ENSMPUG00000012598THOC38696.721Mustela_putorius_furo
ENSG00000051596THOC310091.738ENSMLUG00000027411-10091.738Myotis_lucifugus
ENSG00000051596THOC310089.459ENSMLUG00000026903-10089.459Myotis_lucifugus
ENSG00000051596THOC310098.860ENSMLUG00000005412-10098.860Myotis_lucifugus
ENSG00000051596THOC310097.436ENSNGAG00000010934-10097.436Nannospalax_galili
ENSG00000051596THOC39986.325ENSNBRG00000013917thoc39886.325Neolamprologus_brichardi
ENSG00000051596THOC310099.430ENSNLEG00000000593THOC310099.430Nomascus_leucogenys
ENSG00000051596THOC39198.131ENSMEUG00000001068THOC310092.877Notamacropus_eugenii
ENSG00000051596THOC38480.851ENSMEUG00000013439-9872.100Notamacropus_eugenii
ENSG00000051596THOC39999.143ENSODEG00000010186THOC39999.143Octodon_degus
ENSG00000051596THOC39192.500ENSONIG00000004291thoc39992.500Oreochromis_niloticus
ENSG00000051596THOC310098.575ENSOCUG00000016387THOC310098.575Oryctolagus_cuniculus
ENSG00000051596THOC39192.812ENSORLG00000030384thoc39192.812Oryzias_latipes
ENSG00000051596THOC39192.812ENSORLG00020016372thoc39992.812Oryzias_latipes_hni
ENSG00000051596THOC39192.812ENSORLG00015000336thoc39992.812Oryzias_latipes_hsok
ENSG00000051596THOC39193.125ENSOMEG00000021977thoc39993.125Oryzias_melastigma
ENSG00000051596THOC310099.145ENSOGAG00000003503THOC310099.145Otolemur_garnettii
ENSG00000051596THOC310095.726ENSOARG00000016600THOC310095.726Ovis_aries
ENSG00000051596THOC3100100.000ENSPPAG00000006020THOC3100100.000Pan_paniscus
ENSG00000051596THOC310099.145ENSPPRG00000020316THOC310099.145Panthera_pardus
ENSG00000051596THOC385100.000ENSPTIG00000011325THOC375100.000Panthera_tigris_altaica
ENSG00000051596THOC3100100.000ENSPTRG00000017594THOC3100100.000Pan_troglodytes
ENSG00000051596THOC310099.430ENSPANG00000012114THOC310099.430Papio_anubis
ENSG00000051596THOC39191.875ENSPKIG00000000208thoc39991.875Paramormyrops_kingsleyae
ENSG00000051596THOC39189.688ENSPMGG00000017949thoc39989.688Periophthalmus_magnuspinnatus
ENSG00000051596THOC310097.436ENSPEMG00000003118Thoc310097.436Peromyscus_maniculatus_bairdii
ENSG00000051596THOC39086.984ENSPMAG00000007069thoc39886.984Petromyzon_marinus
ENSG00000051596THOC39985.795ENSPFOG00000007685thoc39985.795Poecilia_formosa
ENSG00000051596THOC39191.250ENSPLAG00000003581thoc39791.250Poecilia_latipinna
ENSG00000051596THOC39191.250ENSPMEG00000005565thoc39791.250Poecilia_mexicana
ENSG00000051596THOC39191.250ENSPREG00000014916thoc39291.250Poecilia_reticulata
ENSG00000051596THOC310099.715ENSPPYG00000016066THOC310099.715Pongo_abelii
ENSG00000051596THOC310099.145ENSPCOG00000023245THOC310099.145Propithecus_coquereli
ENSG00000051596THOC310098.291ENSPVAG00000012450THOC310098.291Pteropus_vampyrus
ENSG00000051596THOC39192.188ENSPNYG00000016612thoc39992.188Pundamilia_nyererei
ENSG00000051596THOC39191.250ENSPNAG00000005252thoc39991.250Pygocentrus_nattereri
ENSG00000051596THOC310098.860ENSRNOG00000000104Thoc310098.860Rattus_norvegicus
ENSG00000051596THOC310099.715ENSRBIG00000039571THOC310099.715Rhinopithecus_bieti
ENSG00000051596THOC310099.715ENSRROG00000031032THOC310099.715Rhinopithecus_roxellana
ENSG00000051596THOC310099.145ENSSBOG00000022663THOC310099.145Saimiri_boliviensis_boliviensis
ENSG00000051596THOC39793.567ENSSHAG00000010757THOC39593.567Sarcophilus_harrisii
ENSG00000051596THOC39969.914ENSSHAG00000013075-9969.914Sarcophilus_harrisii
ENSG00000051596THOC39393.538ENSSFOG00015001867thoc39493.538Scleropages_formosus
ENSG00000051596THOC39193.125ENSSMAG00000006786thoc39993.125Scophthalmus_maximus
ENSG00000051596THOC39192.812ENSSDUG00000008924thoc39992.812Seriola_dumerili
ENSG00000051596THOC39192.812ENSSLDG00000019128thoc39992.812Seriola_lalandi_dorsalis
ENSG00000051596THOC39195.000ENSSPUG00000006652THOC39995.000Sphenodon_punctatus
ENSG00000051596THOC39193.125ENSSPAG00000014229thoc39993.125Stegastes_partitus
ENSG00000051596THOC310098.860ENSSSCG00000014061THOC310098.860Sus_scrofa
ENSG00000051596THOC384100.000ENSTGUG00000000557THOC39994.569Taeniopygia_guttata
ENSG00000051596THOC39985.100ENSTRUG00000002925thoc39985.100Takifugu_rubripes
ENSG00000051596THOC39189.688ENSTNIG00000012958thoc39989.688Tetraodon_nigroviridis
ENSG00000051596THOC385100.000ENSTTRG00000014865THOC3100100.000Tursiops_truncatus
ENSG00000051596THOC310098.860ENSUAMG00000010691THOC310098.860Ursus_americanus
ENSG00000051596THOC39899.128ENSUMAG00000024511THOC310099.128Ursus_maritimus
ENSG00000051596THOC38497.872ENSXETG00000022316thoc39888.644Xenopus_tropicalis
ENSG00000051596THOC39191.250ENSXCOG00000001378thoc39991.250Xiphophorus_couchianus
ENSG00000051596THOC39191.250ENSXMAG00000003232thoc39791.250Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000346transcription export complex15833825.15998806.IDAComponent
GO:0000445THO complex part of transcription export complex21873635.IBAComponent
GO:0000445THO complex part of transcription export complex23222130.IDAComponent
GO:0000784nuclear chromosome, telomeric region24270157.IDAComponent
GO:0003723RNA binding-IEAFunction
GO:0005654nucleoplasm-TASComponent
GO:0006405RNA export from nucleus-TASProcess
GO:0006406mRNA export from nucleus21873635.IBAProcess
GO:0006406mRNA export from nucleus17190602.IDAProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0008380RNA splicing-IEAProcess
GO:0016607nuclear speck-IEAComponent
GO:0031124mRNA 3'-end processing-TASProcess
GO:0046784viral mRNA export from host cell nucleus18974867.IDAProcess
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