EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
25337201Overexpression of Rsf-1 correlates with pathological type, p53 status and survival in primary breast cancer.Int J Clin Exp Pathol2014 Aug 15Ren J-
20228782Serous tubal intraepithelial carcinoma upregulates markers associated with high-grade serous carcinomas including Rsf-1 (HBXAP), cyclin E and fatty acid synthase.Mod Pathol2010 JunSehdev ASdoi: 10.1038/modpathol.2010.60
23456648Quantification of serum HBXAP DNA in lung cancer patients by quantitative fluorescent polymerase chain reaction.Mol Biol Rep2013 JunHou YLdoi: 10.1007/s11033-013-2488-4
22528946Rsf-1 overexpression correlates with poor prognosis and cell proliferation in colon cancer.Tumour Biol2012 OctLiu Sdoi: 10.1007/s13277-012-0399-y
24584698Rsf-1 overexpression in human prostate cancer, implication as a prognostic marker.Tumour Biol2014 JunLi Hdoi: 10.1007/s13277-014-1766-7
18314909Amplification of 11q13 in ovarian carcinoma.Genes Chromosomes Cancer2008 JunBrown LAdoi: 10.1002/gcc.20549.
22569540Rsf-1 expression in rectal cancer: with special emphasis on the independent prognostic value after neoadjuvant chemoradiation.J Clin Pathol2012 AugLin CYdoi: 10.1136/jclinpath-2012-200786
16172393Amplification of a chromatin remodeling gene, Rsf-1/HBXAP, in ovarian carcinoma.Proc Natl Acad Sci U S A2005 Sep 27Shih IeM-
16418735Identification of remodeling and spacing factor 1 (rsf-1, HBXAP) at chromosome 11q13 as a putative oncogene in ovarian cancer.Eur J Hum Genet2006 AprHennessy BT-
28289901Overexpression of Rsf-1 correlates with poor survival and promotes invasion in non-small cell lung cancer.Virchows Arch2017 MayZhang Xdoi: 10.1007/s00428-017-2102-6
29048677MicroRNA-154 as a prognostic factor in bladder cancer inhibits cellular malignancy by targeting RSF1 and RUNX2.Oncol Rep2017 NovZhao Xdoi: 10.3892/or.2017.5992

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1177701554Missense_MutationnovelT559A0.41
BLCAchr1177675149Missense_MutationnovelR1150Q0.26
BLCAchr1177667078Missense_MutationnovelE1389K0.28
BLCAchr1177701668Missense_MutationnovelE521Q0.29
BLCAchr1177675180Missense_MutationnovelD1140N0.42
BLCAchr1177675103Missense_MutationnovelK1165N0.07
BLCAchr1177701813SilentnovelY472Y0.06
BLCAchr1177667094Missense_Mutationrs776494197L1383F0.43
BLCAchr1177701821Missense_MutationnovelE470Q0.1
BLCAchr1177702190Missense_MutationNAE347K0.16
BLCAchr1177667213Missense_MutationnovelE1344Q0.13
BLCAchr1177701473Missense_MutationnovelE586Q0.08
BLCAchr1177700969Missense_MutationnovelE754Q0.18
BLCAchr1177700852Missense_MutationNAD793N0.35
BLCAchr1177701805Missense_MutationnovelS475F0.44
BLCAchr1177698581Missense_MutationNAS874L0.36
BLCAchr1177666993Missense_MutationNAA1417G0.13
BLCAchr1177702208Missense_MutationnovelE341K0.22
BRCAchr1177701155Missense_MutationnovelE692Q0.03
BRCAchr1177701240Missense_MutationNAK663N0.2
BRCAchr1177667296Missense_MutationNAG1316A0.29
BRCAchr1177747074Missense_MutationnovelL112I0.09
BRCAchr1177685155Missense_MutationnovelE969Q0.07
BRCAchr1177693552SilentNAL925L0.28
BRCAchr1177701653Frame_Shift_InsnovelK526Sfs*180.05
BRCAchr1177701584Missense_MutationNAD549Y0.05
CESCchr1177764555Intronnovel0.32
CESCchr1177747119Missense_MutationNAE97Q0.16
CESCchr1177701800Missense_MutationNAD477N0.3
CESCchr1177666954Missense_MutationnovelD1430G0.07
CESCchr1177725700Splice_SiteNAX193_splice0.16
CESCchr1177701046Missense_MutationnovelR728M0.33
CESCchr1177701762SilentNAS489S0.13
CESCchr1177667443Nonsense_MutationNAS1267*0.82
COADchr1177698653Nonsense_MutationnovelW845_T850delins*0.28
COADchr1177698572Missense_MutationnovelE877V0.27
COADchr1177675150Nonsense_MutationNAR1150*0.36
COADchr1177764610Frame_Shift_DelNAK89Nfs*30.28
COADchr1177701469Missense_MutationnovelK587R0.1
COADchr1177698672Nonsense_MutationNAR844*0.22
COADchr1177672102Nonsense_MutationNAR1231*0.21
COADchr1177701728Missense_MutationnovelE501K0.45
COADchr1177691232Missense_MutationNAL943F0.27
COADchr1177667429Nonsense_MutationNAR1272*0.06
COADchr1177672102Nonsense_MutationNAR1231*0.27
COADchr1177701239Frame_Shift_InsNAV664Sfs*110.19
COADchr1177701568Missense_MutationnovelT554S0.05
COADchr1177701570SilentnovelK553K0.04
COADchr1177676958Missense_MutationnovelR1059C0.36
COADchr1177676883Nonsense_MutationnovelR1084*0.19
COADchr1177700805Missense_MutationnovelE808D0.35
COADchr1177675200Missense_Mutationrs200271333P1133L0.54
COADchr1177701030SilentNAI733I0.08
COADchr11776667933'UTRnovel0.3
COADchr1177683787Missense_MutationNAK996N0.37
COADchr1177725675SilentNAT201T0.4
COADchr1177672169SilentNAR1208R0.28
COADchr1177701789SilentnovelI480I0.05
COADchr1177701225SilentNAT668T0.36
COADchr1177702176Silentrs756106440I351I0.27
COADchr1177701705Frame_Shift_InsnovelL509Vfs*80.05
ESCAchr1177672109SilentnovelK1228K0.54
GBMchr11776668233'UTRnovel0.39
GBMchr1177672099Missense_Mutationrs779136727R1232C0.46
GBMchr1177701754Missense_MutationnovelS492F0.2
GBMchr1177672154SilentnovelR1213R0.06
GBMchr1177702423Missense_Mutationrs755144281N269S0.48
HNSCchr1177702089SilentnovelA380A0.44
HNSCchr1177683769Frame_Shift_DelnovelK1002Nfs*180.29
HNSCchr1177740876Missense_MutationnovelD145N0.22
HNSCchr1177701046Missense_MutationnovelR728M0.13
HNSCchr1177701915SilentnovelG438G0.32
HNSCchr1177667475SilentnovelK1256K0.07
HNSCchr1177675199SilentnovelP1133P0.5
HNSCchr1177691166Nonsense_MutationnovelE965*0.24
HNSCchr1177702535Intronnovel0.23
HNSCchr1177701327Missense_MutationnovelI634M0.07
HNSCchr1177666938SilentnovelV1435V0.21
HNSCchr1177667248Nonsense_MutationnovelS1332*0.29
HNSCchr1177701432Silentrs762997932D599D0.22
KIRCchr1177667259SilentNAR1328R0.17
KIRCchr1177701615Missense_MutationNAE538D0.18
KIRCchr1177701315Nonsense_MutationNAC638*0.32
KIRCchr1177764436Intronnovel0.08
KIRPchr1177701163Missense_MutationnovelS689Y0.4
KIRPchr11776668643'UTRrs5779794330.4
KIRPchr1177667008Frame_Shift_InsnovelG1412Vfs*160.32
LAMLchr1177701266Missense_MutationnovelT655P0.05
LAMLchr1177676788Splice_SitenovelX1109_splice0.2
LAMLchr1177666940Missense_MutationnovelV1435I0.04
LGGchr1177675251Missense_MutationNAQ1116R0.49
LGGchr1177702448Missense_MutationnovelD261N0.32
LGGchr1177672045Nonsense_MutationnovelE1250*0.41
LGGchr1177676910Missense_MutationNAK1075E0.05
LGGchr1177701118Frame_Shift_InsnovelS704Kfs*60.45
LGGchr1177701612SilentnovelT539T0.32
LIHCchr1177700831Frame_Shift_DelNAR800Efs*240.41
LIHCchr1177701466Missense_MutationnovelL588S0.37
LIHCchr1177702451Missense_MutationnovelM260V0.29
LIHCchr1177698537Missense_MutationnovelD889Y0.4
LIHCchr1177698615Missense_MutationnovelE863K0.17
LIHCchr1177764564Intronnovel0.29
LUADchr1177725604Missense_MutationnovelR225L0.19
LUADchr1177667417Nonsense_MutationNAR1276*0.05
LUADchr1177667055Missense_MutationnovelD1396E0.09
LUADchr1177672179Missense_MutationnovelR1205K0.27
LUADchr1177701042SilentnovelQ729Q0.4
LUADchr1177691159Missense_MutationnovelR967I0.56
LUADchr1177700977Missense_MutationNAK751I0.25
LUADchr1177700721Missense_MutationnovelK836N0.27
LUADchr1177676990Missense_Mutationrs763953559R1048Q0.05
LUADchr1177678119Missense_MutationnovelI1034V0.08
LUADchr1177667092Missense_MutationnovelI1384S0.24
LUADchr1177700931Silentrs113637838E766E0.3
LUADchr1177702190Nonsense_MutationNAE347*0.33
LUADchr11776668813'UTRnovel0.08
LUSCchr1177702562Intronnovel0.38
LUSCchr1177678131Missense_MutationnovelI1030V0.13
LUSCchr1177702071Frame_Shift_DelNAK386Nfs*60.22
LUSCchr1177702497Splice_SitenovelX245_splice0.03
LUSCchr1177675173Missense_MutationNAD1142G0.46
LUSCchr1177701695Missense_MutationnovelD512Y0.37
LUSCchr1177701237SilentNAV664V0.17
LUSCchr1177676926SilentnovelE1069E0.15
LUSCchr1177701408SilentNAP607P0.42
LUSCchr1177683787SilentnovelK996K0.3
LUSCchr1177693514Missense_MutationNAC938F0.48
LUSCchr1177701535Missense_MutationnovelK565I0.08
LUSCchr1177701446Missense_MutationNAF595L0.2
LUSCchr1177764540Intronnovel0.15
LUSCchr1177672089Missense_MutationnovelE1235A0.2
LUSCchr1177700720Splice_SitenovelX836_splice0.14
OVchr1177702682Intronnovel0.17
OVchr1177764436Intronnovel0.06
OVchr1177764436Intronnovel0.1
OVchr1177667143Missense_MutationNAD1367G0.31
OVchr1177764436Intronnovel0.2
OVchr1177740931SilentNAL126L0.23
OVchr1177701222SilentnovelL669L0.37
OVchr1177764436Intronnovel0.09
PAADchr1177701651Frame_Shift_DelnovelA527Hfs*30.06
PCPGchr1177675250Silentrs779713699Q1116Q0.67
PRADchr1177701407Missense_MutationnovelE608Q0.34
PRADchr1177701294Missense_MutationnovelK645N0.1
READchr1177698672Nonsense_MutationNAR844*0.29
READchr1177700973SilentnovelV752V0.21
READchr1177764615Missense_MutationNAE88K0.28
READchr1177701991Missense_MutationnovelF413C0.07
READchr1177702069Missense_MutationnovelR387Q0.07
READchr1177667299Missense_MutationnovelH1315R0.24
READchr1177725695Nonsense_MutationNAR195*0.1
READchr1177676907Nonsense_MutationnovelR1076*0.42
READchr1177820695Missense_MutationnovelA7V0.2
READchr1177667429Nonsense_MutationNAR1272*0.37
READchr1177675194Missense_MutationnovelS1135Y0.06
READchr1177676865Nonsense_MutationnovelR1090*0.43
READchr1177700917Missense_MutationnovelV771A0.35
READchr1177701581Missense_MutationNAL550I0.32
SARCchr1177764655SilentNAL74L0.36
SARCchr1177667429Nonsense_MutationNAR1272*0.17
SARCchr1177667039Missense_MutationnovelA1402T0.41
SKCMchr1177667416Missense_MutationNAR1276Q0.28
SKCMchr1177693563Missense_MutationnovelR922C0.37
SKCMchr11776669063'UTRnovel0.57
SKCMchr1177672115SilentNAS1226S0.07
SKCMchr1177693563Missense_MutationnovelR922C0.68
SKCMchr1177701865Missense_MutationNAF455Y0.17
SKCMchr1177698672Nonsense_MutationNAR844*0.19
SKCMchr1177691167Silentrs139840785A964A0.26
SKCMchr1177676975Missense_MutationNAS1053F0.39
SKCMchr1177700831Nonsense_MutationNAR800*0.06
SKCMchr1177701071Missense_MutationNAE720K0.55
SKCMchr1177700760SilentnovelL823L0.36
SKCMchr1177701980Missense_MutationNAE417K0.21
SKCMchr1177747102Nonsense_MutationNAW102*0.16
SKCMchr1177698672Nonsense_MutationNAR844*0.3
SKCMchr1177698581Missense_MutationNAS874L0.41
SKCMchr1177701005Missense_Mutationrs142580915R742W0.06
SKCMchr1177701226Missense_MutationNAT668I0.42
SKCMchr1177701921SilentnovelH436H0.07
SKCMchr1177667354Missense_Mutationrs202106933R1297C0.37
SKCMchr1177701486SilentNAI581I0.33
SKCMchr1177701617Missense_MutationNAE538K0.58
SKCMchr1177698556Missense_MutationNAS882R0.43
SKCMchr1177676941SilentNAS1064S0.2
SKCMchr1177667356Missense_Mutationrs755685767S1296F0.54
SKCMchr1177740749Nonsense_MutationnovelS187*0.2
SKCMchr1177740826SilentNAL161L0.31
SKCMchr11776669063'UTRnovel0.12
SKCMchr1177698672Nonsense_MutationNAR844*0.23
SKCMchr1177701397Missense_MutationNAP611L0.33
SKCMchr1177725695Nonsense_MutationNAR195*0.44
SKCMchr1177740828Missense_MutationNAL161F0.25
SKCMchr1177667126Missense_MutationnovelG1373R0.11
STADchr1177698604Silentrs752652254G866G0.16
STADchr1177675162Missense_MutationNAR1146C0.2
STADchr1177667303Missense_MutationNAA1314T0.29
STADchr1177667038Missense_MutationNAA1402E0.2
STADchr1177702071Frame_Shift_DelNAK386Nfs*60.18
STADchr1177702071Frame_Shift_DelNAK386Nfs*60.44
STADchr1177676992SilentNAG1047G0.25
STADchr1177701086Nonsense_MutationNAE715*0.38
STADchr1177701754Missense_MutationNAS492Y0.33
STADchr1177702555Intronnovel0.22
STADchr1177701785Missense_MutationNAT482P0.33
STADchr1177702408Missense_MutationnovelT274I0.36
STADchr1177698500Missense_MutationNAN901T0.08
STADchr1177675238Frame_Shift_DelnovelF1119Lfs*290.11
STADchr1177675200Missense_Mutationrs200271333P1133L0.21
STADchr11776669073'UTRnovel0.29
STADchr1177702071Frame_Shift_DelNAK386Nfs*60.3
STADchr1177701274Missense_MutationNAS652N0.69
STADchr1177672183Nonsense_MutationNAR1204*0.15
TGCTchr1177740915Missense_MutationnovelD132H0.34
THCAchr1177701731Nonsense_MutationnovelG500Ffs*20.06
THCAchr1177701799Missense_MutationNAD477G0.32
UCECchr1177667100SilentNAE1381E0.38
UCECchr1177698617Missense_MutationNAS862N0.37
UCECchr1177701621Missense_MutationNAE536D0.35
UCECchr11776669163'UTRnovel0.32
UCECchr1177691230SilentNAL943L0.26
UCECchr1177701513Missense_MutationnovelK572N0.09
UCECchr1177764593Splice_Regionnovel0.11
UCECchr1177675085Silentrs550978468Y1171Y0.22
UCECchr1177701213Missense_MutationnovelD672E0.29
UCECchr1177702196Missense_MutationnovelA345T0.28
UCECchr1177702488SilentnovelQ247Q0.29
UCECchr1177676958Missense_MutationnovelR1059C0.3
UCECchr1177672101Missense_Mutationrs375867749R1231Q0.42
UCECchr1177701584Missense_MutationNAD549Y0.36
UCECchr1177675169SilentnovelF1143F0.5
UCECchr1177700991Silentrs757797189P746P0.46
UCECchr1177700830Frame_Shift_InsnovelR800Kfs*70.4
UCECchr1177675200Missense_Mutationrs200271333P1133L0.4
UCECchr1177701629Missense_MutationnovelP534S0.36
UCECchr1177691172Missense_MutationnovelR963S0.46
UCECchr1177698672Nonsense_MutationNAR844*0.46
UCECchr1177675051Missense_MutationnovelN1183D0.36
UCECchr1177702175Missense_Mutationrs757424846E352K0.38
UCECchr1177701375SilentnovelE618E0.25
UCECchr11776666623'UTRnovel0.54
UCECchr1177725694Missense_Mutationrs753571778R195Q0.2
UCECchr1177740759Missense_MutationNAD184Y0.39
UCECchr1177740830Missense_MutationNAG160D0.19
UCECchr1177667423Missense_MutationNAR1274W0.42
UCECchr1177667408Missense_MutationNAD1279Y0.19
UCECchr1177700951Nonsense_MutationnovelE760*0.11
UCECchr1177701778Missense_MutationNAG484E0.26
UCECchr1177676977SilentNAI1052I0.24
UCECchr1177702188Silentrs780114893E347E0.19
UCECchr1177740820Nonsense_MutationnovelY163*0.22
UCECchr1177676882Missense_Mutationrs752474632R1084Q0.33
UCECchr1177667429Nonsense_MutationNAR1272*0.07
UCECchr1177700849Nonsense_MutationnovelQ794*0.37
UCECchr1177667100Missense_MutationnovelE1381D0.41
UCECchr1177667324Nonsense_MutationnovelE1307*0.3
UCECchr1177698672Nonsense_MutationNAR844*0.4
UCECchr1177702226Missense_MutationnovelD335Y0.22
UCECchr1177764681Nonsense_MutationnovelE66*0.3
UCECchr1177672213Missense_MutationnovelD1194N0.44
UCECchr1177747065Missense_MutationnovelS115G0.08
UCECchr1177701054Silentrs146551886T725T0.42
UCECchr1177702421Missense_Mutationrs754125186V270I0.34
UCECchr1177740871Silentrs773193267A146A0.26
UCECchr1177666938SilentnovelV1435V0.38
UCECchr1177700792Missense_MutationnovelA813S0.49
UCECchr1177702146SilentNAH361H0.67
UCECchr1177683808Missense_MutationnovelF989L0.5
UCECchr1177676870Missense_Mutationrs765155596R1088H0.46
UCECchr1177725651SilentNAI209I0.41
UCECchr1177683769Frame_Shift_DelnovelK1002Nfs*180.39
UCECchr1177667438Missense_Mutationrs199889950R1269W0.44
UCECchr1177702345In_Frame_InsnovelK294_L295insQLLDIKKN0.07
UCECchr1177667096Missense_MutationnovelL1383V0.33
UCECchr1177700913SilentnovelG772G0.31
UCECchr1177701874Frame_Shift_InsnovelA452Dfs*60.06
UCECchr1177701875In_Frame_InsnovelV451_A452insSRKVFL0.06
UCECchr1177701145Missense_MutationnovelS695C0.15
UCECchr1177702232Missense_MutationnovelP333S0.3
UCECchr1177672102Nonsense_MutationNAR1231*0.51
UCECchr1177702309Missense_MutationnovelI307S0.33
UCECchr11776667053'UTRnovel0.48
UCECchr1177667138Missense_MutationnovelP1369S0.47
UCECchr1177675117Missense_MutationNAR1161C0.08
UCECchr1177701065Missense_Mutationrs750957158T722A0.11
UCECchr1177702175Missense_Mutationrs757424846E352K0.13
UCECchr1177740890Missense_MutationnovelI140T0.3
UCECchr1177702071Missense_MutationnovelK386N0.44
UCECchr1177667423Missense_MutationNAR1274W0.31
UCECchr1177698650Missense_MutationNAR851H0.33
UCECchr1177667376Silentrs746329540E1289E0.3
UCECchr1177701450Frame_Shift_InsnovelT594Dfs*40.41
UCECchr11776666123'UTRnovel0.33
UCECchr1177675110Missense_Mutationrs145881006R1163Q0.31
UCECchr11776666603'UTRnovel0.36
UCECchr1177672153Nonsense_MutationnovelQ1214*0.42
UCECchr1177702631Intronnovel0.29
UCECchr1177725700Splice_SitenovelX193_splice0.15
UCSchr1177701798Missense_MutationnovelD477E0.09

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BRCAAMP0.21118.3616e-65
ESCAAMP0.2120.018342
TGCTDEL0.69330.21504
UCECAMP0.08538.2209e-05

Survival Analysis
CancerP-value Q-value
KIRC0.0001

Kaplan-Meier Survival Analysis

ACC0.0019

Kaplan-Meier Survival Analysis

UCS0.041

Kaplan-Meier Survival Analysis

PRAD0.025

Kaplan-Meier Survival Analysis

PAAD0.00051

Kaplan-Meier Survival Analysis

READ0.05

Kaplan-Meier Survival Analysis

KICH0.046

Kaplan-Meier Survival Analysis

UCEC0.0033

Kaplan-Meier Survival Analysis

GBM0.017

Kaplan-Meier Survival Analysis

LIHC0.018

Kaplan-Meier Survival Analysis

LGG0.0032

Kaplan-Meier Survival Analysis

OV0.029

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000048649 (Gene tree)
Gene ID
51773
Gene Symbol
RSF1
Alias
XAP8|RSF-1|p325|HBXAP
Full Name
remodeling and spacing factor 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
161,022 bases
Position
chr11:77,659,996-77,821,017
Accession
18118
RBP type
non-canonical RBP
Summary
This gene encodes a nuclear protein that interacts with hepatitis B virus X protein (HBX) and facilitates transcription of hepatitis B virus genes by the HBX transcription activator, suggesting a role for this interaction in the virus life cycle. This protein also interacts with SNF2H protein to form the RSF chromatin-remodeling complex, where the SNF2H subunit functions as the nucleosome-dependent ATPase, and this protein as the histone chaperone. [provided by RefSeq, Sep 2011]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
10325428Recognition of exonic splicing enhancer sequences by the Drosophila splicing repressor RSF1.Nucleic Acids Res1999 Jun 1Labourier E-
10090730Antagonism between RSF1 and SR proteins for both splice-site recognition in vitro and Drosophila development.Genes Dev1999 Mar 15Labourier E-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000480887RSF1-2045318-ENSP000004345091189 (aa)-Q96T23
ENST00000467567RSF1-2032982--- (aa)--
ENST00000534794RSF1-212487--- (aa)--
ENST00000529470RSF1-207448--- (aa)--
ENST00000440064RSF1-202604-ENSP00000408844202 (aa)-H7C306
ENST00000531768RSF1-210626--- (aa)--
ENST00000530604RSF1-208520--- (aa)--
ENST00000308488RSF1-20111550XM_005274051ENSP000003115131441 (aa)XP_005274108Q96T23
ENST00000526324RSF1-2052409-ENSP00000432022803 (aa)-H0YCN2
ENST00000531026RSF1-209830-ENSP00000433603276 (aa)-H0YDG9
ENST00000528095RSF1-2062107-ENSP00000436408702 (aa)-H0YER1
ENST00000532556RSF1-211495-ENSP00000436728165 (aa)-H0YEX0
Gene Model
Click here to download ENSG00000048649's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000048649rs10455901177665761?Menarche (age at onset)30595370EFO_0004703
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000048649's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000048649RSF110097.826ENSMUSG00000035623Rsf19982.809Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000123histone acetyltransferase complex21873635.IBAComponent
GO:0000790nuclear chromatin21873635.IBAComponent
GO:0004402histone acetyltransferase activity21873635.IBAFunction
GO:0005515protein binding12972596.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus11788598.12972596.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0006334nucleosome assembly12972596.IDAProcess
GO:0006338chromatin remodeling9836642.IDAProcess
GO:0006352DNA-templated transcription, initiation9836642.IDAProcess
GO:0016573histone acetylation-IEAProcess
GO:0016584nucleosome positioning9836642.IDAProcess
GO:0016887ATPase activity12972596.IDAFunction
GO:0031213RSF complex9836642.IPIComponent
GO:0034080CENP-A containing nucleosome assembly-TASProcess
GO:0042393histone binding21873635.IBAFunction
GO:0042393histone binding12972596.IDAFunction
GO:0043392negative regulation of DNA binding12972596.IDAProcess
GO:0045892negative regulation of transcription, DNA-templated21873635.IBAProcess
GO:0045892negative regulation of transcription, DNA-templated11944984.IDAProcess
GO:0045893positive regulation of transcription, DNA-templated11788598.IDAProcess
GO:0045944positive regulation of transcription by RNA polymerase II21873635.IBAProcess
GO:0046872metal ion binding-IEAFunction
GO:0050434positive regulation of viral transcription11788598.IDAProcess
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