EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
18373870The estrogen and c-Myc target gene HSPC111 is over-expressed in breast cancer and associated with poor patient outcome.Breast Cancer Res2008Butt AJdoi: 10.1186/bcr1985

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr5176385322Missense_MutationnovelE98K0.33
BLCAchr5176386861Missense_MutationnovelR89W0.3
BLCAchr5176385328Splice_SitenovelX96_splice0.46
BLCAchr5176384344Missense_MutationNAQ142E0.1
BLCAchr5176384365Missense_Mutationrs759109610R135C0.29
BLCAchr5176386830Intronnovel0.36
BRCAchr5176386624Intronnovel0.69
BRCAchr5176385285Missense_MutationnovelT110I0.39
BRCAchr51763841363'UTRnovel0.24
BRCAchr5176386842Missense_MutationnovelN95S0.08
CESCchr5176384233Frame_Shift_Insnovel*179Ifs*860.08
COADchr51763839863'UTRnovel0.38
COADchr5176384374Missense_MutationnovelA132T0.08
COADchr5176384365Missense_MutationnovelR135S0.08
ESCAchr5176386850Nonsense_MutationnovelY92*0.32
GBMchr51763841743'UTRnovel0.65
GBMchr5176385300Missense_MutationnovelE105G0.21
KIRCchr51763842073'UTRnovel0.52
LGGchr5176388518Missense_MutationnovelT8A0.13
LUADchr5176385221Splice_RegionNAK131K0.13
LUADchr5176386904Missense_MutationnovelK74N0.27Nop16
LUADchr51763842053'UTRnovel0.31
LUADchr51763841033'UTRnovel0.64
LUADchr5176386813Intronnovel0.14
LUSCchr5176388444SilentNAP32P0.64
OVchr51763841653'UTRnovel0.17
OVchr5176384236Nonsense_MutationNAE178*0.44
PRADchr5176388432Splice_SiteNAX36_splice0.19
READchr5176384277Missense_MutationnovelQ164L0.2
SKCMchr5176384270SilentNAF166F0.45
STADchr5176384293Frame_Shift_DelnovelY159Tfs*1040.16
STADchr5176385231Frame_Shift_InsnovelE128Gfs*40.29
UCECchr5176388447SilentNAA31A0.12
UCECchr51763842043'UTRnovel0.11
UCECchr5176384322Missense_Mutationrs778792802R149Q0.41
UCECchr5176385247Missense_MutationnovelV123L0.24
UCECchr5176384306SilentnovelV154V0.19
UCECchr51763840893'UTRnovel0.16
UCECchr5176384340Missense_MutationNAD143G0.4
UCECchr5176385318Missense_MutationnovelA99V0.08
UCECchr5176385246Missense_MutationnovelV123A0.34
UCECchr5176388476Missense_MutationnovelL22M0.48Nop16
UCECchr5176388275Missense_Mutationrs768780614A59V0.14Nop16
UCECchr5176384298Missense_Mutationrs535942388R157H0.32
UCECchr51763840783'UTRrs7764708590.41
UCECchr5176386904SilentNAK74K0.4
UCECchr5176386579Intronnovel0.36
UCECchr51763842093'UTRnovel0.2
UCECchr5176388302Missense_MutationnovelR50Q0.29Nop16
UCECchr51763839583'UTRnovel0.42

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
KIRCAMP0.59092.1944e-60
KIRPAMP0.11110.069756
KIRPDEL0.03820.11554
LGGDEL0.08581.86e-07
LUADAMP0.17250.24967
LUSCDEL0.59880.002071
MESODEL0.11490.20184
PRADAMP0.03050.16448
SKCMAMP0.11440.23703
THCADEL00.23456

Survival Analysis
CancerP-value Q-value
KIRC0.0017

Kaplan-Meier Survival Analysis

ACC0.0093

Kaplan-Meier Survival Analysis

UCS0.006

Kaplan-Meier Survival Analysis

SKCM0.011

Kaplan-Meier Survival Analysis

ESCA0.002

Kaplan-Meier Survival Analysis

KIRP0.012

Kaplan-Meier Survival Analysis

KICH0.049

Kaplan-Meier Survival Analysis

LIHC0.0032

Kaplan-Meier Survival Analysis

LGG0.0098

Kaplan-Meier Survival Analysis

LUAD0.002

Kaplan-Meier Survival Analysis

UVM0.00075

Kaplan-Meier Survival Analysis

OV0.027

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000048162 (Gene tree)
Gene ID
51491
Gene Symbol
NOP16
Alias
HSPC111|HSPC185|LOC51491
Full Name
NOP16 nucleolar protein
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
5,039 bases
Position
chr5:176,383,937-176,388,975
Accession
26934
RBP type
canonical RBP
Summary
This gene encodes a protein that is localized to the nucleolus. Expression of this gene is induced by estrogens and Myc protein and is a marker of poor patient survival in breast cancer. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000480832Nop16PF09420.106.6e-2212
ENSP00000480832Nop16PF09420.106.6e-2222
ENSP00000427489Nop16PF09420.101.4e-1111
ENSP00000479445Nop16PF09420.103.5e-1111
ENSP00000483001Nop16PF09420.103.9e-1111
ENSP00000484969Nop16PF09420.104.3e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000510608NOP16-2061161--- (aa)--
ENST00000503849NOP16-203582--- (aa)--
ENST00000502663NOP16-202551-ENSP0000042383595 (aa)-D6RC60
ENST00000619979NOP16-210963-ENSP00000484969237 (aa)-A0A087X2G6
ENST00000614830NOP16-2071258-ENSP00000480832178 (aa)-Q9Y3C1
ENST00000618911NOP16-2091087-ENSP00000483001232 (aa)-Q9Y3C1
ENST00000509257NOP16-2051000XM_011534567ENSP00000427489150 (aa)XP_011532869D6RIC3
ENST00000504821NOP16-204544--- (aa)--
ENST00000502577NOP16-201513--- (aa)--
ENST00000621444NOP16-211954-ENSP00000479445231 (aa)-A0A0C4DGU5
ENST00000616685NOP16-208472-ENSP0000047828370 (aa)-A0A087WU10
Gene Model
Click here to download ENSG00000048162's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000048162's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000048162NOP168997.015ENSANAG00000022333NOP1610085.714Aotus_nancymaae
ENSG00000048162NOP168997.015ENSCJAG00000045890NOP169096.753Callithrix_jacchus
ENSG00000048162NOP1610097.191ENSCCAG00000020691NOP1610097.191Cebus_capucinus
ENSG00000048162NOP1610098.315ENSCATG00000035739NOP1610098.315Cercocebus_atys
ENSG00000048162NOP1610097.753ENSCANG00000033502NOP1610097.753Colobus_angolensis_palliatus
ENSG00000048162NOP169086.667ENSETEG00000010391-8777.841Echinops_telfairi
ENSG00000048162NOP168991.045ENSEEUG00000003671NOP169274.757Erinaceus_europaeus
ENSG00000048162NOP1610099.138ENSGGOG00000014331-10099.138Gorilla_gorilla
ENSG00000048162NOP1610096.629ENSMFAG00000042965NOP1610096.629Macaca_fascicularis
ENSG00000048162NOP169988.261ENSMMUG00000009317NOP1610088.261Macaca_mulatta
ENSG00000048162NOP1610097.753ENSMNEG00000045451NOP1610097.753Macaca_nemestrina
ENSG00000048162NOP1610098.315ENSMLEG00000039634NOP1610098.315Mandrillus_leucophaeus
ENSG00000048162NOP1610094.413ENSMICG00000004020NOP1610094.413Microcebus_murinus
ENSG00000048162NOP1610096.629ENSNLEG00000012490NOP1610096.629Nomascus_leucogenys
ENSG00000048162NOP1610092.000ENSPANG00000013926NOP1610092.000Papio_anubis
ENSG00000048162NOP1610095.506ENSPCOG00000022235NOP1610095.506Propithecus_coquereli
ENSG00000048162NOP1610098.315ENSRBIG00000038060NOP1610098.315Rhinopithecus_bieti
ENSG00000048162NOP1610098.315ENSRROG00000043701NOP1610098.315Rhinopithecus_roxellana
ENSG00000048162NOP1610096.067ENSSBOG00000022208NOP1610096.067Saimiri_boliviensis_boliviensis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005634nucleus-IDAComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0005730nucleolus-IDAComponent
GO:0042273ribosomal large subunit biogenesis21873635.IBAProcess
GO:0043231intracellular membrane-bounded organelle-IDAComponent
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