EuRBPDB

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TCGA tumor abbreviations
  • ACCAdrenocortical carcinoma
  • BLCABladder Urothelial Carcinoma
  • BRCABreast invasive carcinoma
  • CESCCervical squamous cell carcinoma and endocervical adenocarcinoma
  • CHOLCholangio carcinoma
  • COADColon adenocarcinoma
  • DLBCLymphoid Neoplasm Diffuse Large B-cell Lymphoma
  • ESCAEsophageal carcinoma
  • GBMGlioblastoma multiforme
  • HNSCHead and Neck squamous cell carcinoma
  • KICHKidney Chromophobe
  • KIRCKidney renal clear cell carcinoma
  • KIRPKidney renal papillary cell carcinoma
  • LAMLAcute Myeloid Leukemia
  • LGGBrain Lower Grade Glioma
  • LIHCLiver hepatocellular carcinoma
  • LUADLung adenocarcinoma
  • LUSCLung squamous cell carcinoma
  • MESOMesothelioma
  • OVOvarian serous cystadenocarcinoma
  • PAADPancreatic adenocarcinoma
  • PCPGPheochromocytoma and Paraganglioma
  • PRADProstate adenocarcinoma
  • READRectum adenocarcinoma
  • SARCSarcoma
  • SKCMSkin Cutaneous Melanoma
  • STADStomach adenocarcinoma
  • TGCTThyroid carcinoma
  • THCAThyroid carcinoma
  • THYMThymoma
  • UCECUterine Corpus Endometrial Carcinoma
  • UCSUterine Carcinosarcoma
  • UVMUveal Melanoma

Note: Click here to get the extension of tumor abbreviations.


  • Cancer Related Information
  • Basic Information

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
27702662Upregulation of SNHG6 regulates ZEB1 expression by competitively binding miR-101-3p and interacting with UPF1 in hepatocellular carcinoma.Cancer Lett2016 Dec 28Chang Ldoi: 10.1016/j.canlet.2016.09.034
28942451The Human RNA Surveillance Factor UPF1 Modulates Gastric Cancer Progression by Targeting Long Non-Coding RNA MALAT1.Cell Physiol Biochem2017Li Ldoi: 10.1159/000479994
23881279Plakophilin-associated RNA-binding proteins in prostate cancer and their implications in tumor progression and metastasis.Virchows Arch2013 SepYang Cdoi: 10.1007/s00428-013-1452-y
18427545The NMD mRNA surveillance pathway downregulates aberrant E-cadherin transcripts in gastric cancer cells and in CDH1 mutation carriers.Oncogene2008 Jul 10Karam Rdoi: 10.1038/onc.2008.62

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr1918856060SilentnovelA571A0.2
ACCchr1918832219Missense_MutationnovelE4Q0.62
BLCAchr1918853038Missense_MutationnovelI342F0.35
BLCAchr1918850708Missense_MutationnovelS217N0.19
BLCAchr1918863487Missense_MutationnovelL895V0.22
BLCAchr1918855009Nonsense_MutationnovelQ477*0.17
BLCAchr1918853275Missense_MutationnovelE372K0.11
BLCAchr1918857008Silentrs113001728L663L0.33
BLCAchr1918853065Missense_MutationnovelD351N0.3
BLCAchr1918857406Silentrs149225517F696F0.15
BLCAchr1918854612Missense_MutationnovelE401Q0.04
BLCAchr19188321885'UTRnovel0.91
BLCAchr1918860859SilentnovelT789T0.19
BLCAchr1918854654Missense_MutationNAE415K0.25
BLCAchr1918853031SilentNAK339K0.37
BLCAchr1918865446Splice_SitenovelX1016_splice0.08
BLCAchr1918846003SilentnovelQ85Q0.23
BLCAchr1918857460SilentNAR714R0.57
BLCAchr1918832303Missense_MutationNAE32Q0.46
BLCAchr1918865596Missense_MutationnovelG1030R0.19
BLCAchr1918866082Frame_Shift_DelnovelD1103Efs*210.08
BLCAchr1918857475SilentnovelL719L0.21
BLCAchr1918865311Frame_Shift_DelnovelQ972Rfs*80.44
BRCAchr1918860078Intronnovel0.19
BRCAchr1918854899Missense_MutationNAT440M0.41
BRCAchr19188670003'UTRnovel0.31
BRCAchr1918854997Missense_MutationnovelR473C0.44
BRCAchr1918853087Missense_MutationnovelV358A0.26
BRCAchr1918856278Missense_MutationNAT612N0.31
BRCAchr1918850147SilentNAE178E0.39
CESCchr1918865326Missense_MutationNAQ976H0.12
CESCchr1918865600Missense_MutationNAR1031H0.44
CESCchr1918862113Missense_Mutationrs748506121N865S0.47
CESCchr1918855974Missense_MutationNAE543K0.41UPF1_Zn_bind
CESCchr1918857426Missense_MutationnovelG703D0.58
CESCchr1918863444Silentrs758737674G880G0.27
CESCchr19188668703'UTRnovel0.3
CESCchr1918856055Missense_MutationnovelL570V0.42
CESCchr1918854612Missense_MutationnovelE401Q0.18
CESCchr1918863465Silentrs757448554P887P0.27
CESCchr1918856196SilentNAL585L0.39
CESCchr1918853040Silentrs780792461I342I0.31
CESCchr1918857443Silentrs749375625L709L0.39
CHOLchr1918857443Missense_MutationnovelL709V0.41
COADchr1918832309Missense_MutationnovelE34K0.11
COADchr1918854607Missense_MutationNAG399D0.47
COADchr1918863450SilentNAI882I0.38
COADchr1918857502Silentrs759452259Y728Y0.33
COADchr1918832239SilentnovelS10S0.57
COADchr1918860878Missense_MutationnovelA796T0.53
COADchr1918860962Missense_MutationNAL824M0.48
COADchr1918857348Missense_MutationnovelL677P0.38
COADchr1918856943Missense_Mutationrs367803735R642C0.09
COADchr1918862125Missense_MutationNAR869H0.25
COADchr1918865755Missense_MutationNAL1083I0.39
COADchr1918847814Missense_MutationNAR148C0.16
COADchr1918856263Missense_MutationNAR607Q0.32
COADchr1918864177Missense_MutationNAR939H0.17
COADchr1918854622Missense_MutationNAI404T0.3
COADchr1918856280Missense_MutationNAA613T0.19
COADchr1918857473Missense_MutationnovelL719F0.41
COADchr1918846093SilentnovelT115T0.17
COADchr1918865598SilentnovelG1030G0.16
COADchr1918850821Missense_MutationNAR255C0.52
COADchr1918846006Silentrs149711534N86N0.3
DLBCchr1918854631Missense_MutationnovelR407Q0.28
ESCAchr1918856191Missense_MutationnovelP583H0.64
ESCAchr1918866107Missense_MutationnovelY1112N0.18
ESCAchr1918856003Silentrs140049775V552V0.3
ESCAchr1918856240Silentrs201992127S599S0.65
GBMchr1918856209Missense_MutationnovelQ589P0.43
GBMchr1918852219Missense_MutationnovelA299T0.06
GBMchr1918855140Frame_Shift_DelnovelT492Mfs*70.19
GBMchr1918865600Missense_MutationNAR1031H0.34
GBMchr1918855142Missense_MutationnovelV493M0.09
GBMchr1918852242Silentrs771987109F306F0.55
GBMchr1918853031SilentNAK339K0.17
GBMchr1918856220Missense_MutationnovelD593Y0.14
GBMchr1918856990SilentnovelC657C0.16
GBMchr1918853307Silentrs374139415A382A0.21
GBMchr1918846071Missense_MutationnovelD108A0.06
GBMchr1918863492Missense_MutationnovelW896C0.09
GBMchr1918857441Missense_MutationNAR708H0.27
HNSCchr1918854694Missense_MutationnovelS428L0.07
HNSCchr1918865550Splice_SitenovelX1018_splice0.25
HNSCchr1918847797Missense_MutationnovelK142R0.15
HNSCchr1918853287Missense_Mutationrs746623373R376W0.19
HNSCchr1918860143Intronnovel0.13
HNSCchr1918863576Missense_MutationnovelF924L0.13
HNSCchr1918856278Missense_MutationnovelT612I0.35
HNSCchr1918856019Missense_MutationnovelK558E0.21
HNSCchr1918852990Nonsense_MutationnovelQ326*0.23
HNSCchr1918846052Missense_MutationnovelE102K0.47
HNSCchr1918856997Missense_MutationnovelP660T0.37
HNSCchr1918856248Missense_MutationnovelD602G0.07
HNSCchr1918832308Missense_MutationnovelF33L0.28
HNSCchr1918857385Silentrs755122505A689A0.26
KIRCchr1918850104Missense_MutationNAK164R0.13
KIRCchr1918864179Missense_MutationNAF940L0.18
KIRPchr1918853258Missense_MutationnovelR366Q0.52
KIRPchr1918852999Missense_MutationnovelI329V0.33
KIRPchr1918850159Missense_MutationnovelE182D0.46
KIRPchr1918860287Intronnovel0.31
LAMLchr1918853006Missense_MutationnovelV331D0.5
LGGchr1918857433SilentnovelR705R0.32
LGGchr1918847786Frame_Shift_InsnovelT139Nfs*640.35
LGGchr1918860970SilentnovelT826T0.18
LGGchr1918855008Silentrs576490273A476A0.34
LGGchr1918855955Silentrs772905706I536I0.38
LGGchr1918857440Missense_MutationNAR708C0.44
LGGchr1918853041Missense_MutationNAA343T0.14
LIHCchr1918850722Missense_MutationnovelI222F0.08
LIHCchr1918854691Missense_MutationnovelK427R0.1
LIHCchr1918856199Nonsense_MutationNAQ586*0.06
LUADchr1918855144SilentNAV493V0.7
LUADchr1918857361SilentNAV681V0.24
LUADchr1918863598Missense_MutationnovelN932D0.38
LUADchr1918860402Missense_MutationnovelE766V0.31
LUADchr1918864224Missense_MutationNAG955C0.47
LUSCchr1918855182Missense_MutationnovelG506D0.38UPF1_Zn_bind
LUSCchr1918832248SilentnovelL13L0.08
LUSCchr1918860429Missense_MutationnovelY775C0.14
LUSCchr1918857377Missense_MutationnovelA687P0.19
LUSCchr1918850195Silentrs546083993L194L0.33
LUSCchr1918865765Missense_Mutationrs767300705P1086L0.34
LUSCchr19188321485'UTRnovel0.27
LUSCchr1918860924Missense_MutationNAR811H0.31
LUSCchr19188322045'UTRnovel0.42
LUSCchr1918850799Silentrs146140734S247S0.18
LUSCchr19188321515'UTRnovel0.38
LUSCchr1918854618Missense_MutationNAA403T0.42
LUSCchr1918854612Missense_MutationnovelE401K0.11
MESOchr1918854671Missense_MutationnovelF420L0.21
OVchr1918856232Missense_MutationnovelE597K0.09
OVchr1918856947Missense_MutationnovelS643F0.14
OVchr1918856043Missense_MutationnovelP566S0.14
OVchr1918866043Splice_SitenovelX1091_splice0.1
OVchr1918852218Silentrs779100457D298D0.29
OVchr1918863503Missense_MutationnovelL900P0.14
OVchr1918864242Missense_MutationnovelS961G0.06
OVchr1918856204SilentnovelK587K0.27
PAADchr1918860112Intronnovel0.25
PRADchr1918865612Missense_MutationNAR1035H0.14
PRADchr1918853288Missense_Mutationrs770535477R376Q0.29
PRADchr1918860904SilentnovelI804I0.33
PRADchr1918866145Silentrs561916655T1124T0.17
READchr1918856944Missense_MutationNAR642H0.23
READchr1918863444Silentrs758737674G880G0.3
READchr1918856961Missense_MutationNAE648K0.48
SARCchr1918857375Missense_Mutationrs765018756A686V0.06
SARCchr1918862137Missense_MutationnovelA873V0.09
SKCMchr1918860863SilentNAL791L0.21
SKCMchr1918860326Missense_MutationNAR741C0.66
SKCMchr1918866052SilentNAY1093Y0.33
SKCMchr1918854709Missense_MutationNAR433K0.25
SKCMchr1918860909Missense_MutationnovelP806L0.73
SKCMchr1918860350Nonsense_MutationNAQ749*0.4
SKCMchr1918855194Missense_MutationnovelT510M0.4UPF1_Zn_bind
SKCMchr1918860883SilentNAK797K0.45
SKCMchr1918865590Missense_Mutationrs749634234R1028C0.42
SKCMchr1918855945Missense_MutationNAP533L0.16UPF1_Zn_bind
SKCMchr1918850142Missense_MutationNAG177R0.38
SKCMchr1918850795Missense_MutationnovelP246L0.38
SKCMchr1918865343Missense_MutationNAA982V0.24
SKCMchr1918857379SilentNAA687A0.4
SKCMchr1918850794Missense_MutationNAP246S0.33
SKCMchr1918857420Missense_MutationNAV701G0.32
SKCMchr1918864252Splice_SiteNAX964_splice0.36
SKCMchr1918850138SilentNAP175P0.11
SKCMchr1918850157Nonsense_MutationNAE182*0.34
SKCMchr1918864222Missense_MutationnovelP954L0.28
SKCMchr1918832254SilentnovelF15F0.08
SKCMchr1918832272SilentNAA21A0.43
SKCMchr1918860426Missense_MutationNAS774F0.31
SKCMchr1918860095Intronnovel0.5
SKCMchr1918832219Missense_MutationNAE4K0.2
STADchr1918854686SilentNAV425V0.18
STADchr1918855228SilentNAA521A0.44
STADchr1918850848Nonsense_MutationnovelK264*0.3
STADchr1918846063Missense_MutationNAF105L0.08
STADchr1918856979Missense_MutationNAE654K0.09
STADchr1918856960Silentrs140516243D647D0.13
STADchr1918852249Missense_MutationNAL309V0.26
STADchr1918857007Missense_MutationNAL663P0.25
STADchr1918856005Frame_Shift_DelnovelL555Qfs*40.23
STADchr1918865580SilentnovelG1024G0.16
STADchr1918866136Silentrs776035891G1121G0.13
STADchr1918854638Silentrs144265702S409S0.16
STADchr1918853306Missense_MutationNAA382V0.28
STADchr1918846084SilentNAT112T0.25
STADchr1918860339Missense_MutationNAG745A0.24
STADchr1918850124Missense_MutationnovelH171Y0.07
STADchr1918856880Missense_MutationnovelA621T0.41
STADchr1918857431Missense_MutationNAR705W0.11
STADchr1918854899Missense_MutationNAT440M0.17
STADchr1918857431Missense_MutationNAR705W0.38
STADchr1918864250Frame_Shift_Delnovel0.42
STADchr1918855990Missense_MutationNAT548M0.19UPF1_Zn_bind
STADchr1918864177Missense_MutationNAR939H0.26
THYMchr1918857376Silentrs369728050A686A0.13
UCECchr1918856045SilentNAP566P0.43
UCECchr1918853040Silentrs780792461I342I0.39
UCECchr1918865311SilentnovelF971F0.33
UCECchr19188670723'UTRrs5530977050.4
UCECchr1918847818Missense_MutationNAG149E0.4
UCECchr1918865560Splice_SitenovelX1018_splice0.54
UCECchr1918866062Missense_Mutationrs754812367E1097K0.51
UCECchr1918852173Frame_Shift_DelnovelV285Wfs*360.44
UCECchr1918863576SilentnovelF924F0.21
UCECchr1918850831Missense_Mutationrs777433267T258M0.52
UCECchr1918860372Missense_MutationnovelP756L0.26
UCECchr1918850735Missense_MutationnovelS226N0.48
UCECchr19188665963'UTRnovel0.35
UCECchr1918860932Missense_MutationNAL814M0.18
UCECchr1918852273Missense_MutationNAD317N0.37
UCECchr1918853262SilentNAL367L0.56
UCECchr1918866083Missense_MutationNAV1104M0.51
UCECchr1918860231Intronnovel0.38
UCECchr1918860379Missense_MutationnovelF758L0.16
UCECchr19188670873'UTRnovel0.36
UCECchr1918853311Missense_MutationnovelL384M0.46
UCECchr1918850183Silentrs780928893N190N0.49
UCECchr1918856003Silentrs140049775V552V0.39
UCECchr1918866119Missense_MutationNAR1116W0.25
UCECchr1918865413Silentrs760619362P1005P0.58
UCECchr1918865682SilentnovelQ1058Q0.13
UCECchr1918857406Silentrs149225517F696F0.4
UCECchr1918860373Silentrs779744388P756P0.39
UCECchr1918864239Missense_MutationnovelR960W0.49
UCECchr1918865428SilentnovelG1010G0.14
UCECchr19188669503'UTRnovel0.44
UCECchr1918856004Missense_Mutationrs763426703V553M0.1
UCECchr1918855189SilentNAG508G0.34
UCECchr1918856280Missense_MutationNAA613T0.27
UCECchr1918860859Silentrs766225206T789T0.35
UCECchr1918862086In_Frame_DelnovelE857_D866del0.08
UCECchr1918847760Missense_Mutationrs753936939D130N0.15
UCECchr1918852242Silentrs771987109F306F0.2
UCECchr1918862036Frame_Shift_InsnovelQ841Sfs*260.38
UCECchr1918866137Missense_Mutationrs763281916G1122R0.44
UCECchr1918860322Splice_Regionrs146958133A739A0.4
UCECchr1918865698Missense_MutationnovelA1064T0.3
UCECchr1918856016Missense_MutationnovelA557T0.22
UCECchr1918862034Missense_MutationnovelA839T0.22
UCECchr1918850715SilentnovelL219L0.09
UCECchr1918852242Silentrs771987109F306F0.36
UCECchr1918854998Missense_MutationNAR473H0.37
UCECchr1918857406Silentrs149225517F696F0.42
UCECchr19188667123'UTRnovel0.55
UCECchr1918850821Missense_MutationNAR255C0.52
UCECchr1918847772Missense_MutationNAV134M0.28
UCECchr1918850174SilentnovelG187G0.26
UCECchr19188670953'UTRnovel0.27
UCECchr1918856263Missense_MutationNAR607Q0.67
UCECchr1918853268Frame_Shift_DelnovelD371Mfs*460.32
UCECchr1918860212Intronnovel0.43
UCECchr1918862139Missense_MutationnovelL874M0.37
UCECchr1918846111Silentrs748049113H121H0.24
UCECchr1918853082SilentnovelD356D0.07
UCECchr1918854921Silentrs137917420S447S0.39
UCECchr1918846064Missense_Mutationrs758924331E106K0.19
UCECchr1918863496Missense_Mutationrs374426265H898Y0.26
UCECchr1918853040Silentrs780792461I342I0.6
UCECchr19188669053'UTRnovel0.45
UCECchr1918865696Missense_MutationnovelG1063D0.28
UCECchr1918853041Missense_MutationNAA343T0.13
UCECchr1918863464Missense_MutationNAP887L0.3
UCECchr1918850178Missense_MutationnovelR189C0.34
UCECchr1918852266Silentrs376694927A314A0.52
UCECchr1918850790Missense_MutationnovelK244N0.37
UCECchr1918853040Silentrs780792461I342I0.35
UCECchr1918860326Missense_MutationNAR741C0.38

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
READDEL0.07880.23023
THCADEL0.0120.090402
THYMDEL0.02440.10691

Survival Analysis
CancerP-value Q-value
KIRC0.00013

Kaplan-Meier Survival Analysis

ACC0.00091

Kaplan-Meier Survival Analysis

BLCA0.042

Kaplan-Meier Survival Analysis

LAML0.00021

Kaplan-Meier Survival Analysis

LGG0.00011

Kaplan-Meier Survival Analysis

THCA0.033

Kaplan-Meier Survival Analysis

Drugs

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Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742

  • Description
  • RBDs
  • RBPome
  • PRI
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000005007 (Gene tree)
Gene ID
5976
Gene Symbol
UPF1
Alias
HUPF1|KIAA0221|NORF1|pNORF1|smg-2|RENT1
Full Name
UPF1 RNA helicase and ATPase
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
36,302 bases
Position
chr19:18,831,935-18,868,236
Accession
9962
RBP type
canonical RBP
Summary
This gene encodes a protein that is part of a post-splicing multiprotein complex involved in both mRNA nuclear export and mRNA surveillance. mRNA surveillance detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD). When translation ends upstream from the last exon-exon junction, this triggers NMD to degrade mRNAs containing premature stop codons. This protein is located only in the cytoplasm. When translation ends, it interacts with the protein that is a functional homolog of yeast Upf2p to trigger mRNA decapping. Use of multiple polyadenylation sites has been noted for this gene. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000262803UPF1_Zn_bindPF09416.102.6e-7411
ENSP00000470142UPF1_Zn_bindPF09416.102.6e-7411
ENSP00000262803ResIIIPF04851.159.2e-0511
ENSP00000470142ResIIIPF04851.159.3e-0511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Protein-RNA interaction(RNA-Binding Site)
Click here to download all RNA binding sites
Click here to download all RNA binding sites

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
27886048Interactions between the HIV-1 Unspliced mRNA and Host mRNA Decay Machineries.Viruses2016 Nov 23Toro-Ascuy D-
25184677A post-translational regulatory switch on UPF1 controls targeted mRNA degradation.Genes Dev2014 Sep 1Kurosaki Tdoi: 10.1101/gad.245506.114.
10999600Characterization of the biochemical properties of the human Upf1 gene product that is involved in nonsense-mediated mRNA decay.RNA2000 SepBhattacharya A-
21419344Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2.Mol Cell2011 Mar 18Chakrabarti Sdoi: 10.1016/j.molcel.2011.02.010.
23881279Plakophilin-associated RNA-binding proteins in prostate cancer and their implications in tumor progression and metastasis.Virchows Arch2013 SepYang Cdoi: 10.1007/s00428-013-1452-y
30655309UPFront and center in RNA decay: UPF1 in nonsense-mediated mRNA decay and beyond.RNA2019 AprKim YKdoi: 10.1261/rna.070136.118
23263869Staufen2 functions in Staufen1-mediated mRNA decay by binding to itself and its paralog and promoting UPF1 helicase but not ATPase activity.Proc Natl Acad Sci U S A2013 Jan 8Park Edoi: 10.1073/pnas.1213508110
28821679UPF1 Governs Synaptic Plasticity through Association with a STAU2 RNA Granule.J Neurosci2017 Sep 20Graber TEdoi: 10.1523/JNEUROSCI.0088-17.2017
29236296RNA Decay Factor UPF1 Promotes Protein Decay: A Hidden Talent.Bioessays2018 JanM Plank TDdoi: 10.1002/bies.201700170
9570320ATP is a cofactor of the Upf1 protein that modulates its translation termination and RNA binding activities.RNA1998 FebWeng Y-
12832468Rapid deadenylation triggered by a nonsense codon precedes decay of the RNA body in a mammalian cytoplasmic nonsense-mediated decay pathway.Mol Cell Biol2003 JulChen CY-
16186820CBP80 promotes interaction of Upf1 with Upf2 during nonsense-mediated mRNA decay in mammalian cells.Nat Struct Mol Biol2005 OctHosoda N-
22965130The Ighmbp2 helicase structure reveals the molecular basis for disease-causing mutations in DMSA1.Nucleic Acids Res2012 NovLim SCdoi: 10.1093/nar/gks792
25225333Plakophilins 1 and 3 bind to FXR1 and thereby influence the mRNA stability of desmosomal proteins.Mol Cell Biol2014 Dec 1Fischer-Keso Rdoi: 10.1128/MCB.00766-14
24762188Characterization of phosphorylation- and RNA-dependent UPF1 interactors by quantitative proteomics.J Proteome Res2014 Jun 6Flury Vdoi: 10.1021/pr5002143
25879614Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance.BMC Genomics2015 Mar 6Maekawa Sdoi: 10.1186/s12864-015-1358-y.
28541562DNA substrate recognition and processing by the full-length human UPF1 helicase.Nucleic Acids Res2017 Jul 7Dehghani-Tafti Sdoi: 10.1093/nar/gkx478.
22713324Biochemical characterization of the RNA helicase UPF1 involved in nonsense-mediated mRNA decay.Methods Enzymol2012Fiorini Fdoi: 10.1016/B978-0-12-396546-2.00012-7.
23832275Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs.Nat Struct Mol Biol2013 AugZund Ddoi: 10.1038/nsmb.2635
19704008Human UPF1 participates in small RNA-induced mRNA downregulation.Mol Cell Biol2009 NovJin Hdoi: 10.1128/MCB.00653-09
21957477Is there a classical nonsense-mediated decay pathway in trypanosomes?PLoS One2011Delhi Pdoi: 10.1371/journal.pone.0025112
21419337UPF1 learns to relax and unwind.Mol Cell2011 Mar 18Gleghorn MLdoi: 10.1016/j.molcel.2011.03.001.
21029861Upf1 senses 3'UTR length to potentiate mRNA decay.Cell2010 Oct 29Hogg JRdoi: 10.1016/j.cell.2010.10.005.
24056942mRNA-mRNA duplexes that autoelicit Staufen1-mediated mRNA decay.Nat Struct Mol Biol2013 OctGong Cdoi: 10.1038/nsmb.2664
23619768Functional characterization of Upf1 targets in Schizosaccharomyces pombe.RNA Biol2013 JunMatia-Gonzalez AMdoi: 10.4161/rna.24569
23524536Staufen1 dimerizes through a conserved motif and a degenerate dsRNA-binding domain to promote mRNA decay.Nat Struct Mol Biol2013 AprGleghorn MLdoi: 10.1038/nsmb.2528
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000598471UPF1-206582--- (aa)--
ENST00000600868UPF1-211580--- (aa)--
ENST00000598209UPF1-205551--- (aa)--
ENST00000601689UPF1-212561--- (aa)--
ENST00000596842UPF1-2043825--- (aa)--
ENST00000600012UPF1-208501--- (aa)--
ENST00000262803UPF1-2015348XM_017027106ENSP000002628031118 (aa)XP_016882595Q92900
ENST00000601981UPF1-213556--- (aa)--
ENST00000594504UPF1-203559--- (aa)--
ENST00000600689UPF1-2103084--- (aa)--
ENST00000594243UPF1-202683--- (aa)--
ENST00000599848UPF1-2075311XM_017027105ENSP000004701421129 (aa)XP_016882594Q92900
ENST00000600310UPF1-209750--- (aa)--
Gene Model
Click here to download ENSG00000005007's gene model file
Pathways
Pathway IDPathway NameSource
hsa03013RNA transportKEGG
hsa03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000005007's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000005007UPF110091.192ENSAPOG00000023773upf110091.281Acanthochromis_polyacanthus
ENSG00000005007UPF110092.507ENSAPOG00000010916-10092.507Acanthochromis_polyacanthus
ENSG00000005007UPF110098.323ENSAMEG00000011474UPF110098.323Ailuropoda_melanoleuca
ENSG00000005007UPF110091.022ENSACIG00000019949upf110091.370Amphilophus_citrinellus
ENSG00000005007UPF19295.024ENSACIG00000010985-10095.122Amphilophus_citrinellus
ENSG00000005007UPF110090.706ENSAOCG00000018519upf110091.278Amphiprion_ocellaris
ENSG00000005007UPF110092.596ENSAOCG00000006352-10092.596Amphiprion_ocellaris
ENSG00000005007UPF110092.596ENSAPEG00000006292-10092.596Amphiprion_percula
ENSG00000005007UPF110090.706ENSAPEG00000016344upf110091.278Amphiprion_percula
ENSG00000005007UPF110092.596ENSATEG00000016606-10092.596Anabas_testudineus
ENSG00000005007UPF110089.886ENSATEG00000017867upf110090.677Anabas_testudineus
ENSG00000005007UPF19398.192ENSAPLG00000009175UPF19998.192Anas_platyrhynchos
ENSG00000005007UPF19597.209ENSANAG00000024107UPF19797.209Aotus_nancymaae
ENSG00000005007UPF110092.328ENSACLG00000022630-10092.239Astatotilapia_calliptera
ENSG00000005007UPF110090.756ENSACLG00000007181upf110091.103Astatotilapia_calliptera
ENSG00000005007UPF110092.959ENSAMXG00000042187upf110093.405Astyanax_mexicanus
ENSG00000005007UPF110099.204ENSBTAG00000020922UPF110099.204Bos_taurus
ENSG00000005007UPF18950.639WBGene00004880smg-29948.029Caenorhabditis_elegans
ENSG00000005007UPF1100100.000ENSCJAG00000019627UPF1100100.000Callithrix_jacchus
ENSG00000005007UPF110099.646ENSCAFG00000014578UPF110099.646Canis_familiaris
ENSG00000005007UPF110099.643ENSCAFG00020012347UPF110099.643Canis_lupus_dingo
ENSG00000005007UPF110099.196ENSCHIG00000011018UPF110099.196Capra_hircus
ENSG00000005007UPF19697.967ENSTSYG00000008877UPF19997.967Carlito_syrichta
ENSG00000005007UPF19398.764ENSCAPG00000005758UPF19598.764Cavia_aperea
ENSG00000005007UPF110096.463ENSCPOG00000025463UPF110096.463Cavia_porcellus
ENSG00000005007UPF1100100.000ENSCCAG00000032175UPF1100100.000Cebus_capucinus
ENSG00000005007UPF19598.411ENSCATG00000040306UPF19898.411Cercocebus_atys
ENSG00000005007UPF19698.336ENSCLAG00000004037UPF110099.620Chinchilla_lanigera
ENSG00000005007UPF110099.911ENSCSAG00000005276UPF110099.911Chlorocebus_sabaeus
ENSG00000005007UPF110096.797ENSCPBG00000012513UPF110096.797Chrysemys_picta_bellii
ENSG00000005007UPF17878.007ENSCING00000021399-9978.236Ciona_intestinalis
ENSG00000005007UPF19971.972ENSCSAVG00000006533-9971.972Ciona_savignyi
ENSG00000005007UPF19599.252ENSCANG00000029819UPF19999.252Colobus_angolensis_palliatus
ENSG00000005007UPF110098.569ENSCGRG00001021067Upf110098.569Cricetulus_griseus_chok1gshd
ENSG00000005007UPF19598.129ENSCGRG00000013480Upf19998.129Cricetulus_griseus_crigri
ENSG00000005007UPF110092.500ENSCSEG00000016159-10092.411Cynoglossus_semilaevis
ENSG00000005007UPF110086.173ENSCSEG00000017239upf110086.262Cynoglossus_semilaevis
ENSG00000005007UPF110092.328ENSCVAG00000010561upf110092.239Cyprinodon_variegatus
ENSG00000005007UPF110092.781ENSDARG00000016302upf110093.226Danio_rerio
ENSG00000005007UPF19595.884ENSDORG00000009984Upf19695.884Dipodomys_ordii
ENSG00000005007UPF18570.941FBgn0030354Upf18467.433Drosophila_melanogaster
ENSG00000005007UPF15585.575ENSEBUG00000010069upf19685.413Eptatretus_burgeri
ENSG00000005007UPF110099.196ENSEASG00005006549UPF110099.196Equus_asinus_asinus
ENSG00000005007UPF110099.196ENSECAG00000010639UPF110099.196Equus_caballus
ENSG00000005007UPF110091.667ENSELUG00000012916-10091.585Esox_lucius
ENSG00000005007UPF110090.240ENSELUG00000020917upf110090.506Esox_lucius
ENSG00000005007UPF110099.558ENSFCAG00000009757UPF110099.558Felis_catus
ENSG00000005007UPF19696.756ENSFALG00000009312UPF19996.756Ficedula_albicollis
ENSG00000005007UPF19797.067ENSFDAG00000014816UPF110099.525Fukomys_damarensis
ENSG00000005007UPF110088.319ENSFHEG00000006428upf110088.319Fundulus_heteroclitus
ENSG00000005007UPF18595.477ENSFHEG00000016276-9695.477Fundulus_heteroclitus
ENSG00000005007UPF110091.254ENSGMOG00000007541upf110091.696Gadus_morhua
ENSG00000005007UPF110097.676ENSGALG00000003220UPF110097.676Gallus_gallus
ENSG00000005007UPF16295.389ENSGAFG00000015443-8893.026Gambusia_affinis
ENSG00000005007UPF110092.232ENSGAFG00000004831upf110092.143Gambusia_affinis
ENSG00000005007UPF110097.143ENSGAGG00000022217UPF110097.143Gopherus_agassizii
ENSG00000005007UPF193100.000ENSGGOG00000002608UPF199100.000Gorilla_gorilla
ENSG00000005007UPF187100.000ENSHBUG00000008939upf195100.000Haplochromis_burtoni
ENSG00000005007UPF19086.207ENSHBUG00000014694upf110086.207Haplochromis_burtoni
ENSG00000005007UPF110099.114ENSHGLG00000010900UPF110099.114Heterocephalus_glaber_female
ENSG00000005007UPF19695.753ENSHGLG00100005904UPF19995.753Heterocephalus_glaber_male
ENSG00000005007UPF110091.518ENSHCOG00000008918upf110093.810Hippocampus_comes
ENSG00000005007UPF110093.405ENSIPUG00000005108UPF110093.761Ictalurus_punctatus
ENSG00000005007UPF110099.642ENSSTOG00000009196UPF110099.642Ictidomys_tridecemlineatus
ENSG00000005007UPF110098.317ENSJJAG00000023151Upf110098.317Jaculus_jaculus
ENSG00000005007UPF110092.685ENSKMAG00000004962upf110092.596Kryptolebias_marmoratus
ENSG00000005007UPF110092.246ENSLBEG00000027848-10092.246Labrus_bergylta
ENSG00000005007UPF110089.339ENSLBEG00000014862upf110090.485Labrus_bergylta
ENSG00000005007UPF16297.274ENSLACG00000008482UPF110097.274Latimeria_chalumnae
ENSG00000005007UPF110095.000ENSLOCG00000002072upf110095.000Lepisosteus_oculatus
ENSG00000005007UPF110098.761ENSLAFG00000014963UPF110098.761Loxodonta_africana
ENSG00000005007UPF1100100.000ENSMFAG00000037748UPF1100100.000Macaca_fascicularis
ENSG00000005007UPF1100100.000ENSMMUG00000023286UPF1100100.000Macaca_mulatta
ENSG00000005007UPF1100100.000ENSMNEG00000000046UPF1100100.000Macaca_nemestrina
ENSG00000005007UPF193100.000ENSMLEG00000028404UPF1100100.000Mandrillus_leucophaeus
ENSG00000005007UPF110091.622ENSMAMG00000006231-10092.068Mastacembelus_armatus
ENSG00000005007UPF110089.622ENSMAMG00000006229upf110090.589Mastacembelus_armatus
ENSG00000005007UPF110089.719ENSMZEG00005003489upf110090.901Maylandia_zebra
ENSG00000005007UPF110092.328ENSMZEG00005016386-10092.239Maylandia_zebra
ENSG00000005007UPF19397.719ENSMGAG00000004745UPF110097.719Meleagris_gallopavo
ENSG00000005007UPF19597.403ENSMAUG00000011398Upf19797.403Mesocricetus_auratus
ENSG00000005007UPF110099.553ENSMICG00000001659UPF110099.553Microcebus_murinus
ENSG00000005007UPF110098.406ENSMOCG00000005699Upf110098.406Microtus_ochrogaster
ENSG00000005007UPF19392.514ENSMMOG00000007537-9992.610Mola_mola
ENSG00000005007UPF110090.527ENSMMOG00000007881upf110090.982Mola_mola
ENSG00000005007UPF110098.147ENSMODG00000003689UPF110098.147Monodelphis_domestica
ENSG00000005007UPF110090.706ENSMALG00000000144upf110090.974Monopterus_albus
ENSG00000005007UPF110091.297ENSMALG00000018100-10091.297Monopterus_albus
ENSG00000005007UPF110098.494MGP_CAROLIEiJ_G0031142Upf110098.494Mus_caroli
ENSG00000005007UPF110098.494ENSMUSG00000058301Upf110098.494Mus_musculus
ENSG00000005007UPF110098.494MGP_PahariEiJ_G0021607Upf110098.494Mus_pahari
ENSG00000005007UPF110098.494MGP_SPRETEiJ_G0032260Upf110098.494Mus_spretus
ENSG00000005007UPF110099.643ENSMPUG00000015516UPF110099.643Mustela_putorius_furo
ENSG00000005007UPF19999.193ENSMLUG00000012122UPF19999.193Myotis_lucifugus
ENSG00000005007UPF110098.671ENSNGAG00000024107Upf110098.671Nannospalax_galili
ENSG00000005007UPF110089.067ENSNBRG00000000670upf110089.413Neolamprologus_brichardi
ENSG00000005007UPF110089.329ENSNBRG00000022069-10093.878Neolamprologus_brichardi
ENSG00000005007UPF19394.202ENSNLEG00000006062UPF110094.202Nomascus_leucogenys
ENSG00000005007UPF18394.314ENSMEUG00000014146-8394.314Notamacropus_eugenii
ENSG00000005007UPF19391.547ENSOPRG00000014018UPF110091.547Ochotona_princeps
ENSG00000005007UPF110097.874ENSODEG00000012426UPF110097.874Octodon_degus
ENSG00000005007UPF110092.417ENSONIG00000012729-10092.328Oreochromis_niloticus
ENSG00000005007UPF110089.982ENSONIG00000010452upf110091.166Oreochromis_niloticus
ENSG00000005007UPF110097.350ENSOANG00000004568UPF110097.350Ornithorhynchus_anatinus
ENSG00000005007UPF110092.417ENSORLG00000008453upf110092.417Oryzias_latipes
ENSG00000005007UPF110092.246ENSORLG00020014758upf110092.246Oryzias_latipes_hni
ENSG00000005007UPF110092.246ENSORLG00015010165upf110092.246Oryzias_latipes_hsok
ENSG00000005007UPF110092.507ENSOMEG00000003665upf110092.417Oryzias_melastigma
ENSG00000005007UPF110099.911ENSOGAG00000012866UPF110099.911Otolemur_garnettii
ENSG00000005007UPF19697.240ENSOARG00000010739UPF110097.240Ovis_aries
ENSG00000005007UPF19599.065ENSPPAG00000043884UPF19799.065Pan_paniscus
ENSG00000005007UPF110099.558ENSPPRG00000023470UPF110099.558Panthera_pardus
ENSG00000005007UPF19397.596ENSPTIG00000010159UPF19997.596Panthera_tigris_altaica
ENSG00000005007UPF1100100.000ENSPTRG00000010721UPF1100100.000Pan_troglodytes
ENSG00000005007UPF1100100.000ENSPANG00000008847UPF1100100.000Papio_anubis
ENSG00000005007UPF19194.634ENSPKIG00000006069upf19992.155Paramormyrops_kingsleyae
ENSG00000005007UPF16897.908ENSPSIG00000009491UPF110097.908Pelodiscus_sinensis
ENSG00000005007UPF110089.235ENSPMGG00000017327upf110089.343Periophthalmus_magnuspinnatus
ENSG00000005007UPF110098.583ENSPEMG00000001085Upf110098.583Peromyscus_maniculatus_bairdii
ENSG00000005007UPF110086.999ENSPMAG00000001206upf110086.436Petromyzon_marinus
ENSG00000005007UPF110098.660ENSPCIG00000006156UPF110098.660Phascolarctos_cinereus
ENSG00000005007UPF110092.321ENSPLAG00000016232-10092.232Poecilia_latipinna
ENSG00000005007UPF110089.292ENSPLAG00000018155-10089.204Poecilia_latipinna
ENSG00000005007UPF110092.239ENSPMEG00000016319-10092.150Poecilia_mexicana
ENSG00000005007UPF110089.840ENSPMEG00000011443-10089.750Poecilia_mexicana
ENSG00000005007UPF110092.143ENSPREG00000011247-10092.054Poecilia_reticulata
ENSG00000005007UPF110089.735ENSPREG00000009940upf110089.735Poecilia_reticulata
ENSG00000005007UPF110095.040ENSPPYG00000009752UPF110095.040Pongo_abelii
ENSG00000005007UPF176100.000ENSPCAG00000012962UPF176100.000Procavia_capensis
ENSG00000005007UPF110099.469ENSPCOG00000023813UPF110099.469Propithecus_coquereli
ENSG00000005007UPF169100.000ENSPVAG00000003183UPF169100.000Pteropus_vampyrus
ENSG00000005007UPF110092.328ENSPNYG00000016731-10092.239Pundamilia_nyererei
ENSG00000005007UPF110089.719ENSPNYG00000003694upf110090.901Pundamilia_nyererei
ENSG00000005007UPF110092.959ENSPNAG00000025614upf110093.405Pygocentrus_nattereri
ENSG00000005007UPF110098.494ENSRNOG00000020134Upf110098.494Rattus_norvegicus
ENSG00000005007UPF19596.916ENSRBIG00000013894UPF19899.781Rhinopithecus_bieti
ENSG00000005007UPF19599.252ENSRROG00000040935UPF19999.252Rhinopithecus_roxellana
ENSG00000005007UPF17655.309YMR080CNAM78655.962Saccharomyces_cerevisiae
ENSG00000005007UPF19598.419ENSSBOG00000023632UPF19898.419Saimiri_boliviensis_boliviensis
ENSG00000005007UPF19398.860ENSSHAG00000010499UPF110098.860Sarcophilus_harrisii
ENSG00000005007UPF110094.826ENSSFOG00015021095upf19997.214Scleropages_formosus
ENSG00000005007UPF110092.424ENSSMAG00000021018-10092.424Scophthalmus_maximus
ENSG00000005007UPF110088.987ENSSMAG00000005055upf110089.789Scophthalmus_maximus
ENSG00000005007UPF110092.602ENSSDUG00000009629-10092.602Seriola_dumerili
ENSG00000005007UPF110089.886ENSSDUG00000013320upf110090.853Seriola_dumerili
ENSG00000005007UPF110090.683ENSSLDG00000020868upf110091.143Seriola_lalandi_dorsalis
ENSG00000005007UPF110092.602ENSSLDG00000006878-10092.602Seriola_lalandi_dorsalis
ENSG00000005007UPF110097.051ENSSPUG00000010538UPF110097.051Sphenodon_punctatus
ENSG00000005007UPF110092.768ENSSPAG00000011521-10092.679Stegastes_partitus
ENSG00000005007UPF110089.196ENSSPAG00000000003upf110089.136Stegastes_partitus
ENSG00000005007UPF110099.115ENSSSCG00000039301UPF110099.115Sus_scrofa
ENSG00000005007UPF18389.597ENSTGUG00000001057UPF110095.428Taeniopygia_guttata
ENSG00000005007UPF110091.429ENSTRUG00000005131-10091.429Takifugu_rubripes
ENSG00000005007UPF110090.438ENSTRUG00000000150upf110090.438Takifugu_rubripes
ENSG00000005007UPF110095.353ENSTTRG00000011544UPF110094.727Tursiops_truncatus
ENSG00000005007UPF110099.553ENSUAMG00000007093UPF110099.553Ursus_americanus
ENSG00000005007UPF19697.961ENSUMAG00000006652UPF19999.896Ursus_maritimus
ENSG00000005007UPF110099.643ENSVVUG00000007797UPF110099.643Vulpes_vulpes
ENSG00000005007UPF110082.379ENSXETG00000013602upf110082.379Xenopus_tropicalis
ENSG00000005007UPF19789.658ENSXCOG00000015275-9689.566Xiphophorus_couchianus
ENSG00000005007UPF19294.859ENSXCOG00000005764-10094.859Xiphophorus_couchianus
ENSG00000005007UPF110089.911ENSXMAG00000001703-10089.821Xiphophorus_maculatus
ENSG00000005007UPF110092.061ENSXMAG00000002540-10091.971Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay21873635.IBAProcess
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay17468741.IDAProcess
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay18369367.IMPProcess
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay10999600.NASProcess
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay8855285.TASProcess
GO:0000294nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay26255671.IMPProcess
GO:0000784nuclear chromosome, telomeric region21829167.IDAComponent
GO:0000785chromatin16488880.IDAComponent
GO:0000932P-body-IEAComponent
GO:0000956nuclear-transcribed mRNA catabolic process23828042.IMPProcess
GO:0003682chromatin binding16488880.IDAFunction
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding24726324.IDAFunction
GO:0003723RNA binding10999600.NASFunction
GO:0004004ATP-dependent RNA helicase activity21873635.IBAFunction
GO:0004004ATP-dependent RNA helicase activity12554878.21419344.IDAFunction
GO:0004386helicase activity9064659.NASFunction
GO:0005515protein binding9620853.11163187.11544179.12417715.12881429.14636577.15680326.16086026.16364915.16488880.16601204.17468741.17469741.17932509.18256688.18362360.18447585.19150429.19417104.19478851.19503078.19556969.19864460.20930030.21829167.23348841.23722113.23788676.24267889.24726324.24965446.25225333.26000482.26255671.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus18362360.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm9064659.NASComponent
GO:0005829cytosol-TASComponent
GO:0006260DNA replication16488880.IMPProcess
GO:0006281DNA repair16488880.IDAProcess
GO:0006406mRNA export from nucleus16488880.TASProcess
GO:0006449regulation of translational termination9620853.IMPProcess
GO:0006449regulation of translational termination10999600.NASProcess
GO:0008270zinc ion binding-IEAFunction
GO:0009048dosage compensation by inactivation of X chromosome-IEAProcess
GO:0016032viral process-IEAProcess
GO:0032201telomere maintenance via semi-conservative replication21829167.IDAProcess
GO:0032204regulation of telomere maintenance17916692.IMPProcess
GO:0035145exon-exon junction complex16601204.IDAComponent
GO:0042162telomeric DNA binding17916692.21829167.IDAFunction
GO:0044530supraspliceosomal complex18362360.IDAComponent
GO:0044770cell cycle phase transition16488880.IMPProcess
GO:0061014positive regulation of mRNA catabolic process24726324.IDAProcess
GO:0061014positive regulation of mRNA catabolic process25225333.26255671.IMPProcess
GO:00611583'-UTR-mediated mRNA destabilization24726324.IDAProcess
GO:00611583'-UTR-mediated mRNA destabilization26255671.IMPProcess
GO:0071044histone mRNA catabolic process16086026.IMPProcess
GO:0071222cellular response to lipopolysaccharide26255671.IDAProcess
GO:0071347cellular response to interleukin-126255671.IDAProcess
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